HEADER CELL CYCLE 23-MAY-23 8P4Z
TITLE CRYSTAL STRUCTURE OF THE HUMAN CDK7 KINASE DOMAIN IN COMPLEX WITH
TITLE 2 LDC4297
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 7;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: 39 KDA PROTEIN KINASE,P39 MO15,CDK-ACTIVATING KINASE 1,CELL
COMPND 5 DIVISION PROTEIN KINASE 7,SERINE/THREONINE-PROTEIN KINASE 1,TFIIH
COMPND 6 BASAL TRANSCRIPTION FACTOR COMPLEX KINASE SUBUNIT;
COMPND 7 EC: 2.7.11.22,2.7.11.23;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: CDK7, CAK, CAK1, CDKN7, MO15, STK1;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPISF9
KEYWDS TRANSFERASE, CYCLIN-DEPENDENT KINASE, CELL DIVISION, CELL CYCLE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.LAURSEN,R.CAING-CARLSSON,R.HOUSSARI,A.JAVADI,Y.R.KIMBUNG,V.MURINA,
AUTHOR 2 J.M.OROZCO-RODRIGUEZ,A.SVENSSON,M.WELIN,D.LOGAN,B.SVENSSON,B.WALSE
REVDAT 2 07-FEB-24 8P4Z 1 REMARK
REVDAT 1 14-JUN-23 8P4Z 0
JRNL AUTH M.LAURSEN,R.CAING-CARLSSON,R.HOUSSARI,A.JAVADI,Y.R.KIMBUNG,
JRNL AUTH 2 V.MURINA,J.M.OROZCO-RODRIGUEZ,A.SVENSSON,M.WELIN,D.LOGAN,
JRNL AUTH 3 B.SVENSSON,B.WALSE
JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN CDK7 KINASE DOMAIN IN COMPLEX
JRNL TITL 2 WITH LDC4297
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.8 (22-FEB-2023)
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 30063
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.226
REMARK 3 R VALUE (WORKING SET) : 0.225
REMARK 3 FREE R VALUE : 0.251
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920
REMARK 3 FREE R VALUE TEST SET COUNT : 1479
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 51
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.77
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 602
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3792
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 569
REMARK 3 BIN R VALUE (WORKING SET) : 0.3740
REMARK 3 BIN FREE R VALUE : 0.4726
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.48
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4393
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 138
REMARK 3 SOLVENT ATOMS : 27
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 75.20
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.8
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.381
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.265
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.385
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.269
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4659 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 6297 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1625 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 777 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4659 ; 10.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 581 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3197 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.007
REMARK 3 BOND ANGLES (DEGREES) : 0.83
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.23
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.78
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -19.1002 -0.2800 34.4299
REMARK 3 T TENSOR
REMARK 3 T11: 0.0086 T22: -0.0434
REMARK 3 T33: -0.0347 T12: -0.0486
REMARK 3 T13: -0.1831 T23: 0.1325
REMARK 3 L TENSOR
REMARK 3 L11: 1.7963 L22: 2.9834
REMARK 3 L33: 9.2319 L12: 0.4904
REMARK 3 L13: 0.3197 L23: -0.0916
REMARK 3 S TENSOR
REMARK 3 S11: 0.1342 S12: 0.0718 S13: -0.1415
REMARK 3 S21: -0.0423 S22: -0.3354 S23: -0.6219
REMARK 3 S31: -0.4656 S32: 0.7057 S33: 0.2012
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -2.8082 11.3373 67.8368
REMARK 3 T TENSOR
REMARK 3 T11: -0.0785 T22: -0.1341
REMARK 3 T33: -0.1417 T12: 0.0008
REMARK 3 T13: -0.0462 T23: 0.0438
REMARK 3 L TENSOR
REMARK 3 L11: 4.0230 L22: 1.4749
REMARK 3 L33: 2.1033 L12: 0.2473
REMARK 3 L13: -1.0656 L23: -0.4347
REMARK 3 S TENSOR
REMARK 3 S11: 0.3202 S12: 0.0402 S13: 0.0733
REMARK 3 S21: -0.2485 S22: -0.1755 S23: -0.0357
REMARK 3 S31: -0.0742 S32: -0.0007 S33: -0.1447
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8P4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-23.
REMARK 100 THE DEPOSITION ID IS D_1292130667.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-JUN-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : MAX IV
REMARK 200 BEAMLINE : BIOMAX
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625
REMARK 200 MONOCHROMATOR : SI (111), HDCM
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 10-JAN-2022
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 (10-JUN-2022)
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30114
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750
REMARK 200 RESOLUTION RANGE LOW (A) : 19.950
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 40.00
REMARK 200 R MERGE (I) : 0.16700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 41.00
REMARK 200 R MERGE FOR SHELL (I) : 4.90900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.8.3 (20-AUG-2021)
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 69.60
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM
REMARK 280 CITRATE, 12% W/V PEG 3350, 0.2 M NDSB-201, PH 7.0, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 Z,X,Y
REMARK 290 6555 Z+1/2,-X+1/2,-Y
REMARK 290 7555 -Z+1/2,-X,Y+1/2
REMARK 290 8555 -Z,X+1/2,-Y+1/2
REMARK 290 9555 Y,Z,X
REMARK 290 10555 -Y,Z+1/2,-X+1/2
REMARK 290 11555 Y+1/2,-Z+1/2,-X
REMARK 290 12555 -Y+1/2,-Z,X+1/2
REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4
REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4
REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4
REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4
REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4
REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4
REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4
REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4
REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4
REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4
REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4
REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 94.08500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.08500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 94.08500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.08500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 94.08500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 94.08500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 94.08500
REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 94.08500
REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 94.08500
REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 94.08500
REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 94.08500
REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 94.08500
REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 94.08500
REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 94.08500
REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 94.08500
REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 94.08500
REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 94.08500
REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 94.08500
REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 141.12750
REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 47.04250
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 47.04250
REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 141.12750
REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 141.12750
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 141.12750
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 47.04250
REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 47.04250
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 141.12750
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 47.04250
REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 141.12750
REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 47.04250
REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 141.12750
REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 47.04250
REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 47.04250
REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 47.04250
REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 141.12750
REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 47.04250
REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 141.12750
REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 141.12750
REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 141.12750
REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 47.04250
REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 47.04250
REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 141.12750
REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 141.12750
REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 47.04250
REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 47.04250
REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 47.04250
REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 47.04250
REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 141.12750
REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 47.04250
REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 141.12750
REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 47.04250
REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 141.12750
REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 141.12750
REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 141.12750
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 8
REMARK 465 PRO A 9
REMARK 465 LYS A 10
REMARK 465 LYS A 44
REMARK 465 LEU A 45
REMARK 465 GLY A 46
REMARK 465 HIS A 47
REMARK 465 ARG A 48
REMARK 465 SER A 49
REMARK 465 GLU A 50
REMARK 465 ALA A 51
REMARK 465 LYS A 52
REMARK 465 ASP A 53
REMARK 465 GLY A 54
REMARK 465 ILE A 55
REMARK 465 GLY A 82
REMARK 465 HIS A 83
REMARK 465 LYS A 84
REMARK 465 SER A 161
REMARK 465 PHE A 162
REMARK 465 GLY A 163
REMARK 465 SER A 164
REMARK 465 PRO A 165
REMARK 465 ASN A 166
REMARK 465 ARG A 167
REMARK 465 ALA A 168
REMARK 465 TYR A 169
REMARK 465 THR A 170
REMARK 465 HIS A 171
REMARK 465 GLN A 172
REMARK 465 VAL A 173
REMARK 465 ASN A 311
REMARK 465 GLY B 8
REMARK 465 HIS B 47
REMARK 465 ARG B 48
REMARK 465 SER B 49
REMARK 465 GLU B 50
REMARK 465 ALA B 51
REMARK 465 LYS B 52
REMARK 465 ASP B 53
REMARK 465 GLY B 54
REMARK 465 ILE B 55
REMARK 465 HIS B 83
REMARK 465 LYS B 84
REMARK 465 SER B 85
REMARK 465 PHE B 162
REMARK 465 GLY B 163
REMARK 465 SER B 164
REMARK 465 PRO B 165
REMARK 465 ASN B 166
REMARK 465 ARG B 167
REMARK 465 ALA B 168
REMARK 465 TYR B 169
REMARK 465 THR B 170
REMARK 465 HIS B 171
REMARK 465 GLN B 172
REMARK 465 VAL B 173
REMARK 465 ASN B 311
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 87 95.30 -64.23
REMARK 500 ARG A 136 -9.13 72.35
REMARK 500 ASP A 137 41.45 -145.47
REMARK 500 ASP A 155 59.87 75.31
REMARK 500 LEU A 158 128.71 30.90
REMARK 500 PHE A 261 72.05 -103.36
REMARK 500 LYS B 10 -5.37 -56.93
REMARK 500 ARG B 136 -8.10 71.31
REMARK 500 ARG B 136 -7.10 70.35
REMARK 500 ASP B 137 41.69 -145.98
REMARK 500 ASP B 155 52.29 74.49
REMARK 500 LEU B 158 50.56 26.49
REMARK 500 PHE B 261 71.47 -103.66
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8P4Z A 10 311 UNP P50613 CDK7_HUMAN 10 311
DBREF 8P4Z B 10 311 UNP P50613 CDK7_HUMAN 10 311
SEQADV 8P4Z GLY A 8 UNP P50613 EXPRESSION TAG
SEQADV 8P4Z PRO A 9 UNP P50613 EXPRESSION TAG
SEQADV 8P4Z GLY B 8 UNP P50613 EXPRESSION TAG
SEQADV 8P4Z PRO B 9 UNP P50613 EXPRESSION TAG
SEQRES 1 A 304 GLY PRO LYS ARG TYR GLU LYS LEU ASP PHE LEU GLY GLU
SEQRES 2 A 304 GLY GLN PHE ALA THR VAL TYR LYS ALA ARG ASP LYS ASN
SEQRES 3 A 304 THR ASN GLN ILE VAL ALA ILE LYS LYS ILE LYS LEU GLY
SEQRES 4 A 304 HIS ARG SER GLU ALA LYS ASP GLY ILE ASN ARG THR ALA
SEQRES 5 A 304 LEU ARG GLU ILE LYS LEU LEU GLN GLU LEU SER HIS PRO
SEQRES 6 A 304 ASN ILE ILE GLY LEU LEU ASP ALA PHE GLY HIS LYS SER
SEQRES 7 A 304 ASN ILE SER LEU VAL PHE ASP PHE MET GLU THR ASP LEU
SEQRES 8 A 304 GLU VAL ILE ILE LYS ASP ASN SER LEU VAL LEU THR PRO
SEQRES 9 A 304 SER HIS ILE LYS ALA TYR MET LEU MET THR LEU GLN GLY
SEQRES 10 A 304 LEU GLU TYR LEU HIS GLN HIS TRP ILE LEU HIS ARG ASP
SEQRES 11 A 304 LEU LYS PRO ASN ASN LEU LEU LEU ASP GLU ASN GLY VAL
SEQRES 12 A 304 LEU LYS LEU ALA ASP PHE GLY LEU ALA LYS SER PHE GLY
SEQRES 13 A 304 SER PRO ASN ARG ALA TYR THR HIS GLN VAL VAL THR ARG
SEQRES 14 A 304 TRP TYR ARG ALA PRO GLU LEU LEU PHE GLY ALA ARG MET
SEQRES 15 A 304 TYR GLY VAL GLY VAL ASP MET TRP ALA VAL GLY CYS ILE
SEQRES 16 A 304 LEU ALA GLU LEU LEU LEU ARG VAL PRO PHE LEU PRO GLY
SEQRES 17 A 304 ASP SER ASP LEU ASP GLN LEU THR ARG ILE PHE GLU THR
SEQRES 18 A 304 LEU GLY THR PRO THR GLU GLU GLN TRP PRO ASP MET CYS
SEQRES 19 A 304 SER LEU PRO ASP TYR VAL THR PHE LYS SER PHE PRO GLY
SEQRES 20 A 304 ILE PRO LEU HIS HIS ILE PHE SER ALA ALA GLY ASP ASP
SEQRES 21 A 304 LEU LEU ASP LEU ILE GLN GLY LEU PHE LEU PHE ASN PRO
SEQRES 22 A 304 CYS ALA ARG ILE THR ALA THR GLN ALA LEU LYS MET LYS
SEQRES 23 A 304 TYR PHE SER ASN ARG PRO GLY PRO THR PRO GLY CYS GLN
SEQRES 24 A 304 LEU PRO ARG PRO ASN
SEQRES 1 B 304 GLY PRO LYS ARG TYR GLU LYS LEU ASP PHE LEU GLY GLU
SEQRES 2 B 304 GLY GLN PHE ALA THR VAL TYR LYS ALA ARG ASP LYS ASN
SEQRES 3 B 304 THR ASN GLN ILE VAL ALA ILE LYS LYS ILE LYS LEU GLY
SEQRES 4 B 304 HIS ARG SER GLU ALA LYS ASP GLY ILE ASN ARG THR ALA
SEQRES 5 B 304 LEU ARG GLU ILE LYS LEU LEU GLN GLU LEU SER HIS PRO
SEQRES 6 B 304 ASN ILE ILE GLY LEU LEU ASP ALA PHE GLY HIS LYS SER
SEQRES 7 B 304 ASN ILE SER LEU VAL PHE ASP PHE MET GLU THR ASP LEU
SEQRES 8 B 304 GLU VAL ILE ILE LYS ASP ASN SER LEU VAL LEU THR PRO
SEQRES 9 B 304 SER HIS ILE LYS ALA TYR MET LEU MET THR LEU GLN GLY
SEQRES 10 B 304 LEU GLU TYR LEU HIS GLN HIS TRP ILE LEU HIS ARG ASP
SEQRES 11 B 304 LEU LYS PRO ASN ASN LEU LEU LEU ASP GLU ASN GLY VAL
SEQRES 12 B 304 LEU LYS LEU ALA ASP PHE GLY LEU ALA LYS SER PHE GLY
SEQRES 13 B 304 SER PRO ASN ARG ALA TYR THR HIS GLN VAL VAL THR ARG
SEQRES 14 B 304 TRP TYR ARG ALA PRO GLU LEU LEU PHE GLY ALA ARG MET
SEQRES 15 B 304 TYR GLY VAL GLY VAL ASP MET TRP ALA VAL GLY CYS ILE
SEQRES 16 B 304 LEU ALA GLU LEU LEU LEU ARG VAL PRO PHE LEU PRO GLY
SEQRES 17 B 304 ASP SER ASP LEU ASP GLN LEU THR ARG ILE PHE GLU THR
SEQRES 18 B 304 LEU GLY THR PRO THR GLU GLU GLN TRP PRO ASP MET CYS
SEQRES 19 B 304 SER LEU PRO ASP TYR VAL THR PHE LYS SER PHE PRO GLY
SEQRES 20 B 304 ILE PRO LEU HIS HIS ILE PHE SER ALA ALA GLY ASP ASP
SEQRES 21 B 304 LEU LEU ASP LEU ILE GLN GLY LEU PHE LEU PHE ASN PRO
SEQRES 22 B 304 CYS ALA ARG ILE THR ALA THR GLN ALA LEU LYS MET LYS
SEQRES 23 B 304 TYR PHE SER ASN ARG PRO GLY PRO THR PRO GLY CYS GLN
SEQRES 24 B 304 LEU PRO ARG PRO ASN
HET WZ8 A 401 32
HET GOL A 402 6
HET GOL A 403 6
HET PGE A 404 10
HET WZ8 B 401 32
HET GOL B 402 6
HET GOL B 403 6
HET GOL B 404 6
HET GOL B 405 6
HET GOL B 406 6
HET 1PE B 407 16
HET GOL B 408 6
HETNAM WZ8 2-[(3R)-PIPERIDIN-3-YL]OXY-8-PROPAN-2-YL-N-[(2-PYRAZOL-
HETNAM 2 WZ8 1-YLPHENYL)METHYL]PYRAZOLO[1,5-A][1,3,5]TRIAZIN-4-
HETNAM 3 WZ8 AMINE
HETNAM GOL GLYCEROL
HETNAM PGE TRIETHYLENE GLYCOL
HETNAM 1PE PENTAETHYLENE GLYCOL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN 1PE PEG400
FORMUL 3 WZ8 2(C23 H28 N8 O)
FORMUL 4 GOL 8(C3 H8 O3)
FORMUL 6 PGE C6 H14 O4
FORMUL 13 1PE C10 H22 O6
FORMUL 15 HOH *27(H2 O)
HELIX 1 AA1 ARG A 57 LEU A 69 1 13
HELIX 2 AA2 LEU A 98 ASP A 104 1 7
HELIX 3 AA3 THR A 110 HIS A 131 1 22
HELIX 4 AA4 LYS A 139 ASN A 141 5 3
HELIX 5 AA5 VAL A 174 ARG A 179 5 6
HELIX 6 AA6 ALA A 180 PHE A 185 1 6
HELIX 7 AA7 VAL A 192 ARG A 209 1 18
HELIX 8 AA8 SER A 217 GLY A 230 1 14
HELIX 9 AA9 ASP A 239 LEU A 243 5 5
HELIX 10 AB1 PRO A 256 PHE A 261 1 6
HELIX 11 AB2 GLY A 265 PHE A 276 1 12
HELIX 12 AB3 THR A 285 LYS A 291 1 7
HELIX 13 AB4 MET A 292 ASN A 297 1 6
HELIX 14 AB5 PRO A 303 LEU A 307 5 5
HELIX 15 AB6 ARG B 57 LEU B 69 1 13
HELIX 16 AB7 LEU B 98 ASP B 104 1 7
HELIX 17 AB8 THR B 110 HIS B 131 1 22
HELIX 18 AB9 LYS B 139 ASN B 141 5 3
HELIX 19 AC1 VAL B 174 ARG B 179 5 6
HELIX 20 AC2 ALA B 180 PHE B 185 1 6
HELIX 21 AC3 VAL B 192 ARG B 209 1 18
HELIX 22 AC4 SER B 217 GLY B 230 1 14
HELIX 23 AC5 ASP B 239 LEU B 243 5 5
HELIX 24 AC6 PRO B 256 PHE B 261 1 6
HELIX 25 AC7 GLY B 265 PHE B 276 1 12
HELIX 26 AC8 THR B 285 LYS B 291 1 7
HELIX 27 AC9 MET B 292 ASN B 297 1 6
HELIX 28 AD1 PRO B 303 LEU B 307 5 5
SHEET 1 AA1 5 GLU A 13 GLU A 20 0
SHEET 2 AA1 5 THR A 25 ARG A 30 -1 O LYS A 28 N LEU A 15
SHEET 3 AA1 5 ILE A 37 LYS A 42 -1 O ILE A 40 N TYR A 27
SHEET 4 AA1 5 SER A 88 ASP A 92 -1 O LEU A 89 N LYS A 41
SHEET 5 AA1 5 LEU A 77 ALA A 80 -1 N ASP A 79 O VAL A 90
SHEET 1 AA2 3 THR A 96 ASP A 97 0
SHEET 2 AA2 3 LEU A 143 LEU A 145 -1 O LEU A 145 N THR A 96
SHEET 3 AA2 3 LEU A 151 LEU A 153 -1 O LYS A 152 N LEU A 144
SHEET 1 AA3 5 TYR B 12 GLY B 19 0
SHEET 2 AA3 5 ALA B 24 ASP B 31 -1 O VAL B 26 N GLY B 19
SHEET 3 AA3 5 GLN B 36 ILE B 43 -1 O GLN B 36 N ASP B 31
SHEET 4 AA3 5 ILE B 87 ASP B 92 -1 O ILE B 87 N ILE B 43
SHEET 5 AA3 5 LEU B 77 PHE B 81 -1 N LEU B 78 O VAL B 90
SHEET 1 AA4 3 THR B 96 ASP B 97 0
SHEET 2 AA4 3 LEU B 143 LEU B 145 -1 O LEU B 145 N THR B 96
SHEET 3 AA4 3 LEU B 151 LEU B 153 -1 O LYS B 152 N LEU B 144
CISPEP 1 ARG A 298 PRO A 299 0 -0.11
CISPEP 2 ARG B 298 PRO B 299 0 2.36
CRYST1 188.170 188.170 188.170 90.00 90.00 90.00 P 41 3 2 48
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005314 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005314 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005314 0.00000