data_8P6B # _entry.id 8P6B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8P6B pdb_00008p6b 10.2210/pdb8p6b/pdb WWPDB D_1292130759 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8P6B _pdbx_database_status.recvd_initial_deposition_date 2023-05-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email c.j.cardin@reading.ac.uk _pdbx_contact_author.name_first Christine _pdbx_contact_author.name_last Cardin _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2556-9995 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McQuaid, K.T.' 1 0000-0002-3222-5584 'Cardin, C.J.' 2 0000-0002-2556-9995 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Ruthenium complex bound to an antiparallel G-quadruplex' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McQuaid, K.T.' 1 0000-0002-3222-5584 primary 'Cardin, C.J.' 2 0000-0002-2556-9995 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') ; 6661.276 1 ? ? ? 'unimolecular DNA G-quadruplex' 2 non-polymer syn 'Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione' 873.880 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DT)(DT)(DT)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG) (DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGTTTGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione' 0K8 3 'POTASSIUM ION' K # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DT n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DT n 1 18 DA n 1 19 DG n 1 20 DG n 1 21 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 21 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0K8 non-polymer . 'Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione' 'Ruthenium polypridyl complex' 'C50 H28 N8 O2 Ru 2' 873.880 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DA 18 18 18 DA DA A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0K8 1 101 101 0K8 LAQ A . C 3 K 1 102 1 K K A . D 3 K 1 103 2 K K A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 2 1 Y 1 A DG 1 ? "C5'" ? A DG 1 "C5'" # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.2_4158: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8P6B _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.131 _cell.length_a_esd ? _cell.length_b 29.131 _cell.length_b_esd ? _cell.length_c 143.294 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8P6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8P6B _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.05 M Potassium Chloride, 0.04 M Sodium Chloride, 0.02 M Sodium cacodylate trihydrate pH 5.5, 17.5% v/v MPD, 0.001 M Hexamine Cobalt(III) chloride, and 0.01 M Magnesium Chloride Hexahydrate ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-05-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.5585 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.5585 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8P6B _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 47.76 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6187 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 37.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.064 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 333 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.337 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8P6B _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 25.23 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4498 _refine.ls_number_reflns_R_free 240 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.42 _refine.ls_percent_reflns_R_free 5.34 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2604 _refine.ls_R_factor_R_free 0.2727 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2594 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.89 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.25 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 441 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 504 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 25.23 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 572 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.758 ? 898 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 35.887 ? 203 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.036 ? 82 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 24 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.50 3.15 . . 133 2088 95.00 . . . . 0.3555 . . . . . . . . . . . 0.3426 'X-RAY DIFFRACTION' 3.15 25.23 . . 107 2170 96.00 . . . . 0.2429 . . . . . . . . . . . 0.2594 # _struct.entry_id 8P6B _struct.title 'Ruthenium complex bound to an antiparallel G-quadruplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8P6B _struct_keywords.text 'G-quadruplex, antiparallel, ruthenium polypyridyl, syn-guanosine, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8P6B _struct_ref.pdbx_db_accession 8P6B _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8P6B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8P6B _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 270 ? 1 MORE 0 ? 1 'SSA (A^2)' 4140 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? A DG 1 A K 103 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 102 1_555 ? ? ? ? ? ? ? 2.981 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 103 1_555 ? ? ? ? ? ? ? 3.224 ? ? metalc4 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 102 1_555 ? ? ? ? ? ? ? 3.190 ? ? metalc5 metalc ? ? A DG 7 O6 ? ? ? 1_555 C K . K ? ? A DG 7 A K 102 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 C K . K ? ? A DG 8 A K 102 1_555 ? ? ? ? ? ? ? 3.029 ? ? metalc7 metalc ? ? A DG 8 O6 ? ? ? 1_555 D K . K ? ? A DG 8 A K 103 1_555 ? ? ? ? ? ? ? 3.120 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 D K . K ? ? A DG 9 A K 103 1_555 ? ? ? ? ? ? ? 2.721 ? ? metalc9 metalc ? ? A DG 13 O6 ? ? ? 1_555 D K . K ? ? A DG 13 A K 103 1_555 ? ? ? ? ? ? ? 2.555 ? ? metalc10 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 14 A K 102 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc11 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K . K ? ? A DG 14 A K 103 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc12 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 102 1_555 ? ? ? ? ? ? ? 2.985 ? ? metalc13 metalc ? ? A DG 19 O6 ? ? ? 1_555 C K . K ? ? A DG 19 A K 102 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc14 metalc ? ? A DG 20 O6 ? ? ? 1_555 C K . K ? ? A DG 20 A K 102 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc15 metalc ? ? A DG 20 O6 ? ? ? 1_555 D K . K ? ? A DG 20 A K 103 1_555 ? ? ? ? ? ? ? 2.805 ? ? metalc16 metalc ? ? A DG 21 O6 ? ? ? 1_555 D K . K ? ? A DG 21 A K 103 1_555 ? ? ? ? ? ? ? 2.835 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 9 N2 ? ? A DG 1 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 1 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 1 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 1 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DT 6 O2 ? ? ? 1_555 A DT 17 N3 ? ? A DT 6 A DT 17 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 7 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 7 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 9 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 12 N7 ? ? A DT 10 A DA 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 12 N6 ? ? A DT 10 A DA 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A DG 13 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 13 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 13 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 15 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 15 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 61.6 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 129.8 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 94.4 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 78.1 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 114.0 ? 6 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 73.0 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 118.9 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 164.8 ? 9 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 95.5 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 80.0 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 162.5 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 101.0 ? 13 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 48.1 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 113.0 ? 15 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 77.4 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 108.4 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 63.5 ? 18 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 95.7 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 168.4 ? 20 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 104.0 ? 21 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 58.4 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 75.4 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 102.0 ? 24 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 154.7 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 116.2 ? 26 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 65.0 ? 27 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 109.1 ? 28 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 75.0 ? 29 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 69.4 ? 30 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 124.7 ? 31 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 77.4 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 101.5 ? 33 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 133.9 ? 34 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 71.8 ? 35 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 109.3 ? 36 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 176.2 ? 37 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 106.0 ? 38 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 49.6 ? 39 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 154.2 ? 40 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 107.9 ? 41 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 77.4 ? 42 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 98.0 ? 43 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 71.6 ? 44 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 88.8 ? 45 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 64.7 ? 46 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 115.3 ? 47 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 161.0 ? 48 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 112.0 ? 49 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 68.1 ? 50 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 68.5 ? 51 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 115.4 ? 52 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 165.4 ? 53 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 101.0 ? 54 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 61.0 ? 55 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 91.4 ? 56 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 67.7 ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 13.6122 1.9459 -31.2444 1.3215 ? 0.1593 ? 0.0200 ? 1.7104 ? -0.0302 ? 1.1219 ? 2.2598 ? 2.6036 ? -2.7780 ? 3.4526 ? -4.5294 ? 6.4403 ? 1.4927 ? -2.3943 ? 1.4889 ? 2.1546 ? 0.1115 ? -1.1540 ? -2.1457 ? 1.6520 ? 0.2190 ? 2 'X-RAY DIFFRACTION' ? refined 4.1086 2.4225 -37.4283 1.2522 ? 0.1053 ? 0.1153 ? 0.9160 ? 0.0262 ? 0.8842 ? 0.0896 ? -0.1885 ? -0.6818 ? 0.0472 ? -0.1897 ? 1.9245 ? 0.3562 ? 0.0050 ? 0.6903 ? 1.7259 ? 0.4028 ? 1.3415 ? -1.7782 ? -1.1236 ? 0.0104 ? 3 'X-RAY DIFFRACTION' ? refined 9.0408 -7.7086 -33.5977 0.9234 ? 0.2354 ? -0.0911 ? 0.8229 ? 0.1564 ? 0.7242 ? 3.2204 ? -0.3968 ? 2.5905 ? 4.2528 ? -0.0015 ? 3.9075 ? -0.1197 ? 1.0305 ? 0.7567 ? 0.1652 ? 0.1111 ? -1.8262 ? 0.3806 ? 1.3778 ? 0.5543 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 5 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 6 through 15 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 16 through 21 ) ; # _pdbx_entry_details.entry_id 8P6B _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0K8 C10 C Y N 1 0K8 C11 C Y N 2 0K8 C12 C Y N 3 0K8 C13 C Y N 4 0K8 C14 C Y N 5 0K8 C15 C Y N 6 0K8 C17 C Y N 7 0K8 C16 C Y N 8 0K8 N7 N Y N 9 0K8 N6 N Y N 10 0K8 N1 N Y N 11 0K8 N3 N Y N 12 0K8 C18 C Y N 13 0K8 C19 C Y N 14 0K8 C20 C Y N 15 0K8 C21 C Y N 16 0K8 C22 C Y N 17 0K8 C23 C Y N 18 0K8 C24 C Y N 19 0K8 C25 C Y N 20 0K8 C26 C Y N 21 0K8 C27 C Y N 22 0K8 C28 C Y N 23 0K8 C29 C Y N 24 0K8 C30 C Y N 25 0K8 C31 C Y N 26 0K8 C32 C Y N 27 0K8 C33 C Y N 28 0K8 C34 C Y N 29 0K8 C35 C Y N 30 0K8 C36 C Y N 31 0K8 C37 C Y N 32 0K8 C38 C Y N 33 0K8 C39 C Y N 34 0K8 C40 C Y N 35 0K8 C41 C Y N 36 0K8 C42 C Y N 37 0K8 C43 C Y N 38 0K8 C44 C Y N 39 0K8 C45 C Y N 40 0K8 C46 C Y N 41 0K8 C47 C Y N 42 0K8 C48 C Y N 43 0K8 C49 C Y N 44 0K8 C50 C Y N 45 0K8 C51 C Y N 46 0K8 C52 C N N 47 0K8 C53 C Y N 48 0K8 C54 C Y N 49 0K8 C55 C Y N 50 0K8 C56 C Y N 51 0K8 C57 C Y N 52 0K8 C58 C Y N 53 0K8 C9 C N N 54 0K8 N2 N Y N 55 0K8 N4 N Y N 56 0K8 N5 N Y N 57 0K8 N8 N Y N 58 0K8 O59 O N N 59 0K8 O60 O N N 60 0K8 RU1 RU N N 61 0K8 H62 H N N 62 0K8 H63 H N N 63 0K8 H64 H N N 64 0K8 H65 H N N 65 0K8 H66 H N N 66 0K8 H67 H N N 67 0K8 H68 H N N 68 0K8 H69 H N N 69 0K8 H70 H N N 70 0K8 H71 H N N 71 0K8 H72 H N N 72 0K8 H73 H N N 73 0K8 H74 H N N 74 0K8 H75 H N N 75 0K8 H76 H N N 76 0K8 H77 H N N 77 0K8 H78 H N N 78 0K8 H79 H N N 79 0K8 H80 H N N 80 0K8 H81 H N N 81 0K8 H82 H N N 82 0K8 H83 H N N 83 0K8 H84 H N N 84 0K8 H85 H N N 85 0K8 H86 H N N 86 0K8 H87 H N N 87 0K8 H88 H N N 88 0K8 H89 H N N 89 DA OP3 O N N 90 DA P P N N 91 DA OP1 O N N 92 DA OP2 O N N 93 DA "O5'" O N N 94 DA "C5'" C N N 95 DA "C4'" C N R 96 DA "O4'" O N N 97 DA "C3'" C N S 98 DA "O3'" O N N 99 DA "C2'" C N N 100 DA "C1'" C N R 101 DA N9 N Y N 102 DA C8 C Y N 103 DA N7 N Y N 104 DA C5 C Y N 105 DA C6 C Y N 106 DA N6 N N N 107 DA N1 N Y N 108 DA C2 C Y N 109 DA N3 N Y N 110 DA C4 C Y N 111 DA HOP3 H N N 112 DA HOP2 H N N 113 DA "H5'" H N N 114 DA "H5''" H N N 115 DA "H4'" H N N 116 DA "H3'" H N N 117 DA "HO3'" H N N 118 DA "H2'" H N N 119 DA "H2''" H N N 120 DA "H1'" H N N 121 DA H8 H N N 122 DA H61 H N N 123 DA H62 H N N 124 DA H2 H N N 125 DG OP3 O N N 126 DG P P N N 127 DG OP1 O N N 128 DG OP2 O N N 129 DG "O5'" O N N 130 DG "C5'" C N N 131 DG "C4'" C N R 132 DG "O4'" O N N 133 DG "C3'" C N S 134 DG "O3'" O N N 135 DG "C2'" C N N 136 DG "C1'" C N R 137 DG N9 N Y N 138 DG C8 C Y N 139 DG N7 N Y N 140 DG C5 C Y N 141 DG C6 C N N 142 DG O6 O N N 143 DG N1 N N N 144 DG C2 C N N 145 DG N2 N N N 146 DG N3 N N N 147 DG C4 C Y N 148 DG HOP3 H N N 149 DG HOP2 H N N 150 DG "H5'" H N N 151 DG "H5''" H N N 152 DG "H4'" H N N 153 DG "H3'" H N N 154 DG "HO3'" H N N 155 DG "H2'" H N N 156 DG "H2''" H N N 157 DG "H1'" H N N 158 DG H8 H N N 159 DG H1 H N N 160 DG H21 H N N 161 DG H22 H N N 162 DT OP3 O N N 163 DT P P N N 164 DT OP1 O N N 165 DT OP2 O N N 166 DT "O5'" O N N 167 DT "C5'" C N N 168 DT "C4'" C N R 169 DT "O4'" O N N 170 DT "C3'" C N S 171 DT "O3'" O N N 172 DT "C2'" C N N 173 DT "C1'" C N R 174 DT N1 N N N 175 DT C2 C N N 176 DT O2 O N N 177 DT N3 N N N 178 DT C4 C N N 179 DT O4 O N N 180 DT C5 C N N 181 DT C7 C N N 182 DT C6 C N N 183 DT HOP3 H N N 184 DT HOP2 H N N 185 DT "H5'" H N N 186 DT "H5''" H N N 187 DT "H4'" H N N 188 DT "H3'" H N N 189 DT "HO3'" H N N 190 DT "H2'" H N N 191 DT "H2''" H N N 192 DT "H1'" H N N 193 DT H3 H N N 194 DT H71 H N N 195 DT H72 H N N 196 DT H73 H N N 197 DT H6 H N N 198 K K K N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0K8 C33 C34 doub Y N 1 0K8 C33 C32 sing Y N 2 0K8 C30 C32 sing Y N 3 0K8 C30 C29 doub Y N 4 0K8 C34 C35 sing Y N 5 0K8 C32 C31 doub Y N 6 0K8 C29 C28 sing Y N 7 0K8 C35 C36 sing Y N 8 0K8 C35 C39 doub Y N 9 0K8 C31 C39 sing Y N 10 0K8 C31 N5 sing Y N 11 0K8 C36 C37 doub Y N 12 0K8 C28 N5 doub Y N 13 0K8 C39 N6 sing Y N 14 0K8 N5 RU1 sing N N 15 0K8 C26 C25 sing Y N 16 0K8 C26 C27 doub Y N 17 0K8 C25 N4 doub Y N 18 0K8 C37 C38 sing Y N 19 0K8 N6 C38 doub Y N 20 0K8 N6 RU1 sing N N 21 0K8 C27 C24 sing Y N 22 0K8 N4 RU1 sing N N 23 0K8 N4 C23 sing Y N 24 0K8 RU1 N8 sing N N 25 0K8 RU1 N7 sing N N 26 0K8 RU1 N3 sing N N 27 0K8 C51 N8 doub Y N 28 0K8 C51 C50 sing Y N 29 0K8 N8 C48 sing Y N 30 0K8 C24 C23 doub Y N 31 0K8 C24 C17 sing Y N 32 0K8 C23 C22 sing Y N 33 0K8 C50 C49 doub Y N 34 0K8 N7 C40 doub Y N 35 0K8 N7 C44 sing Y N 36 0K8 C40 C41 sing Y N 37 0K8 C48 C44 sing Y N 38 0K8 C48 C47 doub Y N 39 0K8 C44 C43 doub Y N 40 0K8 C49 C47 sing Y N 41 0K8 C47 C46 sing Y N 42 0K8 C41 C42 doub Y N 43 0K8 N2 C17 sing Y N 44 0K8 N2 C15 doub Y N 45 0K8 N3 C22 sing Y N 46 0K8 N3 C21 doub Y N 47 0K8 C17 C16 doub Y N 48 0K8 C22 C18 doub Y N 49 0K8 C43 C42 sing Y N 50 0K8 C43 C45 sing Y N 51 0K8 C46 C45 doub Y N 52 0K8 C21 C20 sing Y N 53 0K8 C12 C15 sing Y N 54 0K8 C12 C11 doub Y N 55 0K8 C15 C14 sing Y N 56 0K8 C18 C16 sing Y N 57 0K8 C18 C19 sing Y N 58 0K8 C16 N1 sing Y N 59 0K8 C11 C10 sing Y N 60 0K8 C20 C19 doub Y N 61 0K8 C14 N1 doub Y N 62 0K8 C14 C13 sing Y N 63 0K8 C10 C13 doub Y N 64 0K8 C10 C9 sing N N 65 0K8 C13 C52 sing N N 66 0K8 O60 C9 doub N N 67 0K8 C9 C54 sing N N 68 0K8 C52 O59 doub N N 69 0K8 C52 C53 sing N N 70 0K8 C54 C53 doub Y N 71 0K8 C54 C58 sing Y N 72 0K8 C53 C55 sing Y N 73 0K8 C58 C57 doub Y N 74 0K8 C55 C56 doub Y N 75 0K8 C57 C56 sing Y N 76 0K8 C11 H62 sing N N 77 0K8 C12 H63 sing N N 78 0K8 C19 H64 sing N N 79 0K8 C20 H65 sing N N 80 0K8 C21 H66 sing N N 81 0K8 C25 H67 sing N N 82 0K8 C26 H68 sing N N 83 0K8 C27 H69 sing N N 84 0K8 C28 H70 sing N N 85 0K8 C29 H71 sing N N 86 0K8 C30 H72 sing N N 87 0K8 C33 H73 sing N N 88 0K8 C34 H74 sing N N 89 0K8 C36 H75 sing N N 90 0K8 C37 H76 sing N N 91 0K8 C38 H77 sing N N 92 0K8 C40 H78 sing N N 93 0K8 C41 H79 sing N N 94 0K8 C42 H80 sing N N 95 0K8 C45 H81 sing N N 96 0K8 C46 H82 sing N N 97 0K8 C49 H83 sing N N 98 0K8 C50 H84 sing N N 99 0K8 C51 H85 sing N N 100 0K8 C55 H86 sing N N 101 0K8 C56 H87 sing N N 102 0K8 C57 H88 sing N N 103 0K8 C58 H89 sing N N 104 DA OP3 P sing N N 105 DA OP3 HOP3 sing N N 106 DA P OP1 doub N N 107 DA P OP2 sing N N 108 DA P "O5'" sing N N 109 DA OP2 HOP2 sing N N 110 DA "O5'" "C5'" sing N N 111 DA "C5'" "C4'" sing N N 112 DA "C5'" "H5'" sing N N 113 DA "C5'" "H5''" sing N N 114 DA "C4'" "O4'" sing N N 115 DA "C4'" "C3'" sing N N 116 DA "C4'" "H4'" sing N N 117 DA "O4'" "C1'" sing N N 118 DA "C3'" "O3'" sing N N 119 DA "C3'" "C2'" sing N N 120 DA "C3'" "H3'" sing N N 121 DA "O3'" "HO3'" sing N N 122 DA "C2'" "C1'" sing N N 123 DA "C2'" "H2'" sing N N 124 DA "C2'" "H2''" sing N N 125 DA "C1'" N9 sing N N 126 DA "C1'" "H1'" sing N N 127 DA N9 C8 sing Y N 128 DA N9 C4 sing Y N 129 DA C8 N7 doub Y N 130 DA C8 H8 sing N N 131 DA N7 C5 sing Y N 132 DA C5 C6 sing Y N 133 DA C5 C4 doub Y N 134 DA C6 N6 sing N N 135 DA C6 N1 doub Y N 136 DA N6 H61 sing N N 137 DA N6 H62 sing N N 138 DA N1 C2 sing Y N 139 DA C2 N3 doub Y N 140 DA C2 H2 sing N N 141 DA N3 C4 sing Y N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8P6B 'double helix' 8P6B 'hairpin loop' 8P6B 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 6 1_555 A DT 17 1_555 1.462 -3.896 -0.443 50.201 -7.377 134.741 1 A_DT6:DT17_A A 6 ? A 17 ? ? ? 1 A DG 7 1_555 A DG 15 1_555 -1.851 3.537 -0.592 19.193 -1.403 92.479 2 A_DG7:DG15_A A 7 ? A 15 ? 6 3 1 A DT 10 1_555 A DA 12 1_555 -1.409 3.398 0.279 -13.072 -22.104 -76.037 3 A_DT10:DA12_A A 10 ? A 12 ? 23 3 1 A DG 1 1_555 A DG 21 1_555 1.701 3.446 0.519 -9.138 2.478 -89.781 4 A_DG1:DG21_A A 1 ? A 21 ? 6 3 1 A DG 9 1_555 A DG 13 1_555 -1.904 -2.887 -0.307 16.058 -1.512 96.238 5 A_DG9:DG13_A A 9 ? A 13 ? 6 3 1 A DG 20 1_555 A DG 14 1_555 -0.803 -3.746 0.530 -6.786 -4.930 92.861 6 A_DG20:DG14_A A 20 ? A 14 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 6 1_555 A DT 17 1_555 A DG 7 1_555 A DG 15 1_555 1.369 -0.158 3.946 1.428 10.544 42.854 -1.409 -1.661 3.846 14.171 -1.920 44.094 1 AA_DT6DG7:DG15DT17_AA A 6 ? A 17 ? A 7 ? A 15 ? 1 A DT 10 1_555 A DA 12 1_555 A DG 1 1_555 A DG 21 1_555 6.100 -3.286 -0.744 -97.723 -131.518 -34.416 1.654 3.080 0.733 70.311 -52.244 -164.577 2 AA_DT10DG1:DG21DA12_AA A 10 ? A 12 ? A 1 ? A 21 ? 1 A DG 1 1_555 A DG 21 1_555 A DG 9 1_555 A DG 13 1_555 1.647 3.187 0.147 18.401 -11.988 -175.883 -1.594 0.825 0.149 5.998 9.206 -175.959 3 AA_DG1DG9:DG13DG21_AA A 1 ? A 21 ? A 9 ? A 13 ? 1 A DG 9 1_555 A DG 13 1_555 A DG 20 1_555 A DG 14 1_555 3.688 1.042 2.719 53.316 153.592 -86.465 -1.137 2.068 0.284 -79.365 27.550 -167.333 4 AA_DG9DG20:DG14DG13_AA A 9 ? A 13 ? A 20 ? A 14 ? # _pdbx_audit_support.funding_organization 'Biotechnology and Biological Sciences Research Council (BBSRC)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number BB/T008342/1 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 0K8 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 0K8 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8P6B _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.034327 _atom_sites.fract_transf_matrix[1][2] 0.019819 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039638 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006979 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H K N O P RU # loop_