HEADER IMMUNE SYSTEM 02-JUN-23 8P8Q TITLE RECOMBINANT YM1 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-N-ACETYLHEXOSAMINIDASE YM1,CHITINASE-3-LIKE PROTEIN 3, COMPND 5 ECF-L,EOSINOPHIL CHEMOTACTIC CYTOKINE,SECRETED PROTEIN YM1; COMPND 6 EC: 3.2.1.52; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: RECOMBINANT YM1 (UNIPROT ID O35744, RESIDUES 22 - 398) COMPND 9 WAS SECRETED FROM HEK293 FREESTYLE CELLS AND PURIFIED VIA ION COMPND 10 EXCHANGE CHROMATOGRAPHY AND SEC. THE MOUSE IGH SIGNAL PEPTIDE COMPND 11 (MGWSCIIFFLVATATGVHS) WAS USED AS A SECRETION SIGNAL. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CHIL3, CHI3L3, YM1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 FREESTYLE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PCAGGS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCAGGSS_YM1 KEYWDS YM1, CHIL3, CHITINASE-LIKE PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.H.G.VERSCHUEREN,K.VERSTRAETE,I.HEYNDRICKX,H.AEGERTER,U.SMOLE, AUTHOR 2 S.N.SAVVIDES,B.N.LAMBRECHT REVDAT 2 24-JAN-24 8P8Q 1 JRNL REVDAT 1 17-JAN-24 8P8Q 0 JRNL AUTH I.HEYNDRICKX,K.DESWARTE,K.VERSTRAETE,K.H.G.VERSCHUEREN, JRNL AUTH 2 U.SMOLE,H.AEGERTER,A.DANSERCOER,H.HAMMAD,S.N.SAVVIDES, JRNL AUTH 3 B.N.LAMBRECHT JRNL TITL YM1 PROTEIN CRYSTALS PROMOTE TYPE 2 IMMUNITY. JRNL REF ELIFE V. 12 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38194250 JRNL DOI 10.7554/ELIFE.90676 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.HEYNDRICKX,K.DESWARTE,K.VERSTRAETE,K.VERSCHUEREN,U.SMOLE, REMARK 1 AUTH 2 H.AEGERTER,A.DANSERCOER,H.HAMMAD,S.SAVVIDES,B.LAMBRECHT REMARK 1 TITL YM1 PROTEIN CRYSTALS PROMOTE TYPE 2 IMMUNITY REMARK 1 REF ELIFE 2023 REMARK 1 REFN ESSN 2050-084X REMARK 1 DOI 10.7554/ELIFE.90676.2 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (6-FEB-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 643 REMARK 3 BIN R VALUE (WORKING SET) : 0.2233 REMARK 3 BIN FREE R VALUE : 0.2131 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.89 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.20580 REMARK 3 B22 (A**2) : 1.66800 REMARK 3 B33 (A**2) : 3.53780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.58440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.124 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.110 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.122 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.110 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3090 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4212 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1031 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 522 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3079 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 387 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2952 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|24 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.9114 2.9848 8.3568 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.0221 REMARK 3 T33: 0.0540 T12: -0.0029 REMARK 3 T13: -0.0400 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.8496 L22: 1.3336 REMARK 3 L33: 4.4839 L12: -0.5736 REMARK 3 L13: -0.0140 L23: 2.3487 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: 0.0239 S13: -0.0832 REMARK 3 S21: -0.0407 S22: -0.0288 S23: 0.1099 REMARK 3 S31: -0.0326 S32: -0.1579 S33: -0.0799 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|25 - A|127 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.3334 18.4016 9.3300 REMARK 3 T TENSOR REMARK 3 T11: -0.0380 T22: -0.0465 REMARK 3 T33: -0.0346 T12: 0.0055 REMARK 3 T13: -0.0229 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.5781 L22: 0.8487 REMARK 3 L33: 0.4309 L12: 0.0343 REMARK 3 L13: 0.1221 L23: -0.0756 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.0095 S13: 0.0353 REMARK 3 S21: -0.1304 S22: 0.0371 S23: 0.0695 REMARK 3 S31: -0.0362 S32: -0.0412 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|128 - A|166 } REMARK 3 ORIGIN FOR THE GROUP (A): 35.8569 26.4820 18.6893 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: -0.0050 REMARK 3 T33: -0.0220 T12: -0.0020 REMARK 3 T13: -0.0211 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 4.8686 L22: 0.7935 REMARK 3 L33: 1.4412 L12: -1.1159 REMARK 3 L13: -0.5465 L23: 0.2242 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.0499 S13: 0.2793 REMARK 3 S21: 0.0486 S22: 0.0459 S23: 0.0633 REMARK 3 S31: -0.1434 S32: -0.1030 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|167 - A|195 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.7405 15.8286 19.9486 REMARK 3 T TENSOR REMARK 3 T11: -0.0398 T22: -0.0378 REMARK 3 T33: -0.0427 T12: 0.0181 REMARK 3 T13: -0.0172 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.7086 L22: 2.1238 REMARK 3 L33: 1.1225 L12: -0.9471 REMARK 3 L13: -0.5779 L23: 1.1053 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0120 S13: -0.0191 REMARK 3 S21: -0.0726 S22: -0.0094 S23: -0.0272 REMARK 3 S31: -0.0399 S32: 0.0516 S33: 0.0381 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|196 - A|213 } REMARK 3 ORIGIN FOR THE GROUP (A): 56.4762 -1.4875 17.7185 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0156 REMARK 3 T33: 0.0679 T12: 0.0089 REMARK 3 T13: 0.0013 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.6589 L22: 2.1011 REMARK 3 L33: 3.0921 L12: 0.2869 REMARK 3 L13: -1.1661 L23: 0.2834 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: 0.1046 S13: -0.1232 REMARK 3 S21: -0.0503 S22: -0.0000 S23: -0.2772 REMARK 3 S31: 0.0588 S32: 0.1002 S33: 0.0378 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|214 - A|290 } REMARK 3 ORIGIN FOR THE GROUP (A): 48.9560 -0.2193 14.2793 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: -0.0193 REMARK 3 T33: -0.0015 T12: 0.0017 REMARK 3 T13: -0.0150 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.2636 L22: 0.6092 REMARK 3 L33: 0.4409 L12: -0.2580 REMARK 3 L13: -0.1742 L23: 0.1565 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.0096 S13: 0.0028 REMARK 3 S21: 0.0143 S22: -0.0001 S23: -0.0274 REMARK 3 S31: 0.0501 S32: 0.0164 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|291 - A|373 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.5651 -5.1056 19.1511 REMARK 3 T TENSOR REMARK 3 T11: -0.0224 T22: -0.0315 REMARK 3 T33: 0.0001 T12: -0.0188 REMARK 3 T13: -0.0068 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.8381 L22: 0.6892 REMARK 3 L33: 0.6042 L12: -0.5022 REMARK 3 L13: -0.1214 L23: 0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.0143 S13: -0.0917 REMARK 3 S21: 0.0252 S22: 0.0138 S23: 0.0475 REMARK 3 S31: 0.0741 S32: -0.0245 S33: -0.0092 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 BUILT=20180808 REMARK 200 DATA SCALING SOFTWARE : AIMLESS VERSION 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 59.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.060 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CONDITION A7 OF THE HAMPTON RESEARCH REMARK 280 CRYSTAL SCREEN HT (0.1 M SODIUM CACODYLATE PH 6.5, 1.4 M SODIUM REMARK 280 ACETATE) CRYO-PROTECTION: MOTHER LIQUOR SUPPLEMENTED WITH 30% (V/ REMARK 280 V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.00450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 TRP A -16 REMARK 465 SER A -15 REMARK 465 CYS A -14 REMARK 465 ILE A -13 REMARK 465 ILE A -12 REMARK 465 PHE A -11 REMARK 465 PHE A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 ALA A -7 REMARK 465 THR A -6 REMARK 465 ALA A -5 REMARK 465 THR A -4 REMARK 465 GLY A -3 REMARK 465 VAL A -2 REMARK 465 HIS A -1 REMARK 465 SER A 0 REMARK 465 LYS A 374 REMARK 465 GLY A 375 REMARK 465 PRO A 376 REMARK 465 TYR A 377 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 707 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 50 OG SER A 349 2655 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 205 70.62 -151.36 REMARK 500 ALA A 245 41.68 -99.10 REMARK 500 ARG A 354 176.19 70.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 8P8Q A 0 377 UNP O35744 CHIL3_MOUSE 21 398 SEQADV 8P8Q MET A -18 UNP O35744 INITIATING METHIONINE SEQADV 8P8Q GLY A -17 UNP O35744 EXPRESSION TAG SEQADV 8P8Q TRP A -16 UNP O35744 EXPRESSION TAG SEQADV 8P8Q SER A -15 UNP O35744 EXPRESSION TAG SEQADV 8P8Q CYS A -14 UNP O35744 EXPRESSION TAG SEQADV 8P8Q ILE A -13 UNP O35744 EXPRESSION TAG SEQADV 8P8Q ILE A -12 UNP O35744 EXPRESSION TAG SEQADV 8P8Q PHE A -11 UNP O35744 EXPRESSION TAG SEQADV 8P8Q PHE A -10 UNP O35744 EXPRESSION TAG SEQADV 8P8Q LEU A -9 UNP O35744 EXPRESSION TAG SEQADV 8P8Q VAL A -8 UNP O35744 EXPRESSION TAG SEQADV 8P8Q ALA A -7 UNP O35744 EXPRESSION TAG SEQADV 8P8Q THR A -6 UNP O35744 EXPRESSION TAG SEQADV 8P8Q ALA A -5 UNP O35744 EXPRESSION TAG SEQADV 8P8Q THR A -4 UNP O35744 EXPRESSION TAG SEQADV 8P8Q GLY A -3 UNP O35744 EXPRESSION TAG SEQADV 8P8Q VAL A -2 UNP O35744 EXPRESSION TAG SEQADV 8P8Q HIS A -1 UNP O35744 EXPRESSION TAG SEQRES 1 A 396 MET GLY TRP SER CYS ILE ILE PHE PHE LEU VAL ALA THR SEQRES 2 A 396 ALA THR GLY VAL HIS SER TYR GLN LEU MET CYS TYR TYR SEQRES 3 A 396 THR SER TRP ALA LYS ASP ARG PRO ILE GLU GLY SER PHE SEQRES 4 A 396 LYS PRO GLY ASN ILE ASP PRO CYS LEU CYS THR HIS LEU SEQRES 5 A 396 ILE TYR ALA PHE ALA GLY MET GLN ASN ASN GLU ILE THR SEQRES 6 A 396 TYR THR HIS GLU GLN ASP LEU ARG ASP TYR GLU ALA LEU SEQRES 7 A 396 ASN GLY LEU LYS ASP LYS ASN THR GLU LEU LYS THR LEU SEQRES 8 A 396 LEU ALA ILE GLY GLY TRP LYS PHE GLY PRO ALA PRO PHE SEQRES 9 A 396 SER ALA MET VAL SER THR PRO GLN ASN ARG GLN ILE PHE SEQRES 10 A 396 ILE GLN SER VAL ILE ARG PHE LEU ARG GLN TYR ASN PHE SEQRES 11 A 396 ASP GLY LEU ASN LEU ASP TRP GLN TYR PRO GLY SER ARG SEQRES 12 A 396 GLY SER PRO PRO LYS ASP LYS HIS LEU PHE SER VAL LEU SEQRES 13 A 396 VAL LYS GLU MET ARG LYS ALA PHE GLU GLU GLU SER VAL SEQRES 14 A 396 GLU LYS ASP ILE PRO ARG LEU LEU LEU THR SER THR GLY SEQRES 15 A 396 ALA GLY ILE ILE ASP VAL ILE LYS SER GLY TYR LYS ILE SEQRES 16 A 396 PRO GLU LEU SER GLN SER LEU ASP TYR ILE GLN VAL MET SEQRES 17 A 396 THR TYR ASP LEU HIS ASP PRO LYS ASP GLY TYR THR GLY SEQRES 18 A 396 GLU ASN SER PRO LEU TYR LYS SER PRO TYR ASP ILE GLY SEQRES 19 A 396 LYS SER ALA ASP LEU ASN VAL ASP SER ILE ILE SER TYR SEQRES 20 A 396 TRP LYS ASP HIS GLY ALA ALA SER GLU LYS LEU ILE VAL SEQRES 21 A 396 GLY PHE PRO ALA TYR GLY HIS THR PHE ILE LEU SER ASP SEQRES 22 A 396 PRO SER LYS THR GLY ILE GLY ALA PRO THR ILE SER THR SEQRES 23 A 396 GLY PRO PRO GLY LYS TYR THR ASP GLU SER GLY LEU LEU SEQRES 24 A 396 ALA TYR TYR GLU VAL CYS THR PHE LEU ASN GLU GLY ALA SEQRES 25 A 396 THR GLU VAL TRP ASP ALA PRO GLN GLU VAL PRO TYR ALA SEQRES 26 A 396 TYR GLN GLY ASN GLU TRP VAL GLY TYR ASP ASN VAL ARG SEQRES 27 A 396 SER PHE LYS LEU LYS ALA GLN TRP LEU LYS ASP ASN ASN SEQRES 28 A 396 LEU GLY GLY ALA VAL VAL TRP PRO LEU ASP MET ASP ASP SEQRES 29 A 396 PHE SER GLY SER PHE CYS HIS GLN ARG HIS PHE PRO LEU SEQRES 30 A 396 THR SER THR LEU LYS GLY ASP LEU ASN ILE HIS SER ALA SEQRES 31 A 396 SER CYS LYS GLY PRO TYR HET ACT A 400 7 HET GOL A 401 14 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *220(H2 O) HELIX 1 AA1 TRP A 10 ARG A 14 5 5 HELIX 2 AA2 PRO A 15 SER A 19 5 5 HELIX 3 AA3 LYS A 21 ILE A 25 5 5 HELIX 4 AA4 HIS A 49 LEU A 62 1 14 HELIX 5 AA5 LYS A 63 LYS A 65 5 3 HELIX 6 AA6 PRO A 82 SER A 90 1 9 HELIX 7 AA7 THR A 91 TYR A 109 1 19 HELIX 8 AA8 PRO A 128 ASP A 153 1 26 HELIX 9 AA9 ILE A 166 TYR A 174 1 9 HELIX 10 AB1 LYS A 175 LEU A 183 1 9 HELIX 11 AB2 ASP A 195 GLY A 199 5 5 HELIX 12 AB3 ILE A 214 LEU A 220 5 7 HELIX 13 AB4 ASN A 221 HIS A 232 1 12 HELIX 14 AB5 ALA A 235 GLU A 237 5 3 HELIX 15 AB6 TYR A 282 GLU A 291 1 10 HELIX 16 AB7 ASN A 317 ASN A 331 1 15 HELIX 17 AB8 PRO A 340 ASP A 344 5 5 HELIX 18 AB9 PHE A 356 LEU A 366 1 11 SHEET 1 AA110 GLU A 44 THR A 46 0 SHEET 2 AA110 HIS A 32 GLN A 41 -1 N GLY A 39 O THR A 46 SHEET 3 AA110 LYS A 70 GLY A 76 1 O ALA A 74 N ALA A 38 SHEET 4 AA110 GLY A 113 ASP A 117 1 O ASN A 115 N LEU A 73 SHEET 5 AA110 LEU A 158 GLY A 163 1 O THR A 160 N LEU A 116 SHEET 6 AA110 TYR A 185 VAL A 188 1 O GLN A 187 N GLY A 163 SHEET 7 AA110 LEU A 239 PRO A 244 1 O ILE A 240 N ILE A 186 SHEET 8 AA110 GLY A 335 TRP A 339 1 O VAL A 337 N PHE A 243 SHEET 9 AA110 GLN A 2 THR A 8 1 N MET A 4 O ALA A 336 SHEET 10 AA110 HIS A 32 GLN A 41 1 O ILE A 34 N TYR A 7 SHEET 1 AA2 3 THR A 264 THR A 267 0 SHEET 2 AA2 3 TYR A 246 LEU A 252 -1 N ILE A 251 O ILE A 265 SHEET 3 AA2 3 LEU A 279 ALA A 281 -1 O LEU A 280 N GLY A 247 SHEET 1 AA3 5 THR A 264 THR A 267 0 SHEET 2 AA3 5 TYR A 246 LEU A 252 -1 N ILE A 251 O ILE A 265 SHEET 3 AA3 5 GLU A 311 GLY A 314 -1 O GLY A 314 N HIS A 248 SHEET 4 AA3 5 VAL A 303 GLN A 308 -1 N ALA A 306 O VAL A 313 SHEET 5 AA3 5 THR A 294 ASP A 298 -1 N VAL A 296 O TYR A 305 SSBOND 1 CYS A 5 CYS A 30 1555 1555 2.02 SSBOND 2 CYS A 28 CYS A 373 1555 1555 2.07 SSBOND 3 CYS A 286 CYS A 351 1555 1555 2.04 CISPEP 1 ALA A 36 PHE A 37 0 -1.24 CISPEP 2 GLN A 119 TYR A 120 0 3.59 CISPEP 3 TRP A 339 PRO A 340 0 -15.41 CRYST1 50.331 60.009 60.115 90.00 94.66 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019868 0.000000 0.001620 0.00000 SCALE2 0.000000 0.016664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016690 0.00000