HEADER IMMUNE SYSTEM 02-JUN-23 8P8T TITLE EX VIVO YM2 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE-LIKE PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHITINASE-3-LIKE PROTEIN 4,SECRETED PROTEIN YM2; COMPND 5 OTHER_DETAILS: SINGLE EX VIVO YM2 CRYSTALS WERE HARVESTED FROM THE COMPND 6 BAL FLUID OF C57BL/6J-TG(CAG-GAL10)BLA MICE. THE SEQUENCE CORRESPONDS COMPND 7 TO UNIPROT ID Q91Z98. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6J-TG(CAG-GAL10)BLA; SOURCE 6 ORGAN: LUNG KEYWDS YM2, CHIL4, IN VIVO CRYSTALLIZATION, CHITINASE-LIKE PROTEIN, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.H.G.VERSCHUEREN,K.VERSTRAETE,I.HEYNDRICKX,U.SMOLE,H.AEGERTER, AUTHOR 2 S.N.SAVVIDES,B.N.LAMBRECHT REVDAT 2 24-JAN-24 8P8T 1 JRNL REVDAT 1 17-JAN-24 8P8T 0 JRNL AUTH I.HEYNDRICKX,K.DESWARTE,K.VERSTRAETE,K.H.G.VERSCHUEREN, JRNL AUTH 2 U.SMOLE,H.AEGERTER,A.DANSERCOER,H.HAMMAD,S.N.SAVVIDES, JRNL AUTH 3 B.N.LAMBRECHT JRNL TITL YM1 PROTEIN CRYSTALS PROMOTE TYPE 2 IMMUNITY. JRNL REF ELIFE V. 12 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38194250 JRNL DOI 10.7554/ELIFE.90676 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.HEYNDRICKX,K.DESWARTE,K.VERSTRAETE,K.VERSCHUEREN,U.SMOLE, REMARK 1 AUTH 2 H.AEGERTER,A.DANSERCOER,H.HAMMAD,S.SAVVIDES,B.LAMBRECHT REMARK 1 TITL YM1 PROTEIN CRYSTALS PROMOTE TYPE 2 IMMUNITY REMARK 1 REF ELIFE 2023 REMARK 1 REFN ESSN 2050-084X REMARK 1 DOI 10.7554/ELIFE.90676.2 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 39026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.80 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 781 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2328 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 746 REMARK 3 BIN R VALUE (WORKING SET) : 0.2323 REMARK 3 BIN FREE R VALUE : 0.2439 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.52560 REMARK 3 B22 (A**2) : -1.27620 REMARK 3 B33 (A**2) : 3.80180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.32170 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.110 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.102 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.107 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.102 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3101 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4221 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1044 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 524 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3101 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 389 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3826 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|24 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.3186 2.5577 8.0254 REMARK 3 T TENSOR REMARK 3 T11: -0.0155 T22: 0.0168 REMARK 3 T33: -0.0033 T12: -0.0145 REMARK 3 T13: -0.0066 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.3257 L22: 0.3427 REMARK 3 L33: 1.6086 L12: -0.8266 REMARK 3 L13: -0.2406 L23: -0.2137 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.0120 S13: -0.0911 REMARK 3 S21: -0.0387 S22: -0.0402 S23: 0.0351 REMARK 3 S31: -0.1041 S32: -0.1056 S33: -0.0397 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|25 - A|127 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.7032 18.6049 9.2344 REMARK 3 T TENSOR REMARK 3 T11: -0.0634 T22: -0.0319 REMARK 3 T33: -0.0527 T12: 0.0011 REMARK 3 T13: -0.0065 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.4740 L22: 0.5969 REMARK 3 L33: 0.2188 L12: 0.0080 REMARK 3 L13: -0.0264 L23: 0.0428 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.0333 S13: 0.0284 REMARK 3 S21: -0.0500 S22: 0.0335 S23: 0.0682 REMARK 3 S31: -0.0458 S32: -0.0439 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|128 - A|166 } REMARK 3 ORIGIN FOR THE GROUP (A): 36.9180 26.3897 18.6676 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0018 REMARK 3 T33: -0.0054 T12: 0.0034 REMARK 3 T13: -0.0027 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 3.2248 L22: 0.5175 REMARK 3 L33: 1.0643 L12: -0.4704 REMARK 3 L13: -0.5477 L23: 0.0375 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0061 S13: 0.0982 REMARK 3 S21: 0.0925 S22: -0.0136 S23: 0.0866 REMARK 3 S31: -0.1412 S32: -0.0643 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|167 - A|195 } REMARK 3 ORIGIN FOR THE GROUP (A): 47.9783 16.0236 19.8750 REMARK 3 T TENSOR REMARK 3 T11: -0.0257 T22: -0.0015 REMARK 3 T33: -0.0191 T12: 0.0045 REMARK 3 T13: -0.0014 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: 1.2035 REMARK 3 L33: 0.7976 L12: -0.2907 REMARK 3 L13: -0.1068 L23: 0.5122 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0087 S13: -0.0214 REMARK 3 S21: -0.0289 S22: 0.0020 S23: -0.0441 REMARK 3 S31: -0.0403 S32: 0.0535 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|196 - A|213 } REMARK 3 ORIGIN FOR THE GROUP (A): 57.9651 -1.3964 17.7604 REMARK 3 T TENSOR REMARK 3 T11: -0.0147 T22: 0.0394 REMARK 3 T33: 0.0523 T12: -0.0062 REMARK 3 T13: -0.0062 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.8762 L22: 2.3948 REMARK 3 L33: 2.8610 L12: -0.2515 REMARK 3 L13: -1.6836 L23: -0.5587 REMARK 3 S TENSOR REMARK 3 S11: -0.0320 S12: -0.0614 S13: -0.1208 REMARK 3 S21: -0.0009 S22: -0.0434 S23: -0.1984 REMARK 3 S31: -0.0280 S32: 0.2510 S33: 0.0754 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|214 - A|290 } REMARK 3 ORIGIN FOR THE GROUP (A): 50.2938 -0.6746 14.0785 REMARK 3 T TENSOR REMARK 3 T11: -0.0702 T22: -0.0136 REMARK 3 T33: -0.0280 T12: -0.0005 REMARK 3 T13: -0.0000 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.1577 L22: 0.0878 REMARK 3 L33: 0.2155 L12: 0.0332 REMARK 3 L13: 0.0271 L23: -0.2307 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0437 S13: -0.0043 REMARK 3 S21: 0.0144 S22: -0.0003 S23: -0.0040 REMARK 3 S31: 0.0613 S32: 0.0189 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|291 - A|373 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.5387 -4.8827 19.4364 REMARK 3 T TENSOR REMARK 3 T11: -0.0178 T22: 0.0002 REMARK 3 T33: 0.0024 T12: -0.0103 REMARK 3 T13: 0.0069 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7987 L22: 0.6330 REMARK 3 L33: 0.6477 L12: -0.3808 REMARK 3 L13: -0.0682 L23: -0.0665 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.0232 S13: -0.0717 REMARK 3 S21: 0.0314 S22: 0.0587 S23: 0.0462 REMARK 3 S31: 0.0480 S32: -0.0216 S33: -0.0279 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000089224 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 BUILT=20180808 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.470 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SINGLE EX VIVO YM2 CRYSTALS WERE REMARK 280 HARVESTED FROM THE BAL FLUID OF TRANSGENIC C57BL/6J-TG(CAG-GAL10) REMARK 280 BLA MICE AND CRYOPROTECTED BY A BRIEF SOAK IN PBS + 35% (V/V) REMARK 280 GLYCEROL., IN CELL, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.10250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 LYS A -18 REMARK 465 LEU A -17 REMARK 465 ILE A -16 REMARK 465 LEU A -15 REMARK 465 VAL A -14 REMARK 465 THR A -13 REMARK 465 GLY A -12 REMARK 465 LEU A -11 REMARK 465 ALA A -10 REMARK 465 ILE A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 ASN A -6 REMARK 465 VAL A -5 REMARK 465 GLN A -4 REMARK 465 LEU A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 ALA A 375 REMARK 465 SER A 376 REMARK 465 TYR A 377 REMARK 465 ARG A 378 REMARK 465 GLY A 379 REMARK 465 GLU A 380 REMARK 465 LEU A 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 671 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 16 -108.76 32.63 REMARK 500 ALA A 245 36.75 -98.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 8P8T A -20 381 UNP Q91Z98 CHIL4_MOUSE 1 402 SEQRES 1 A 402 MET ALA LYS LEU ILE LEU VAL THR GLY LEU ALA ILE LEU SEQRES 2 A 402 LEU ASN VAL GLN LEU GLY SER SER TYR GLN LEU MET CYS SEQRES 3 A 402 TYR TYR THR SER TRP ALA LYS ASP ARG PRO THR GLU GLY SEQRES 4 A 402 SER PHE LYS PRO GLY ASN ILE ASP PRO CYS LEU CYS THR SEQRES 5 A 402 HIS LEU ILE TYR ALA PHE ALA GLY MET LYS ASN ASN GLU SEQRES 6 A 402 ILE THR TYR LEU SER GLU GLN ASP LEU ARG ASP TYR GLU SEQRES 7 A 402 ALA LEU ASN GLY LEU LYS ASP ARG ASN THR GLU LEU LYS SEQRES 8 A 402 THR LEU LEU ALA ILE GLY GLY TRP LYS PHE GLY PRO ALA SEQRES 9 A 402 PRO PHE SER SER MET VAL SER THR PRO GLN ASN ARG GLN SEQRES 10 A 402 THR PHE ILE LYS SER VAL ILE ARG PHE LEU ARG GLN TYR SEQRES 11 A 402 ASN PHE ASP GLY LEU ASN LEU ASP TRP GLN TYR PRO GLY SEQRES 12 A 402 SER ARG GLY SER PRO PRO LYS ASP LYS HIS LEU PHE SER SEQRES 13 A 402 VAL LEU VAL GLN GLU MET ARG LYS ALA PHE GLU GLU GLU SEQRES 14 A 402 SER THR LEU ASN HIS ILE PRO ARG LEU LEU LEU THR SER SEQRES 15 A 402 THR GLY ALA GLY PHE ILE ASP VAL ILE LYS SER GLY TYR SEQRES 16 A 402 LYS ILE PRO GLU LEU SER GLN SER LEU ASP TYR ILE GLN SEQRES 17 A 402 VAL MET THR TYR ASP LEU HIS ASP PRO LYS ASN GLY TYR SEQRES 18 A 402 THR GLY GLU ASN SER PRO LEU TYR LYS SER PRO TYR ASP SEQRES 19 A 402 ILE GLY LYS SER ALA ASP LEU ASN VAL ASP SER ILE ILE SEQRES 20 A 402 THR TYR TRP LYS ASP HIS GLY ALA ALA SER GLU LYS LEU SEQRES 21 A 402 ILE VAL GLY PHE PRO ALA TYR GLY HIS THR PHE ILE LEU SEQRES 22 A 402 SER ASP PRO SER LYS ASN GLY ILE GLY ASP PRO THR VAL SEQRES 23 A 402 SER ALA GLY PRO PRO GLY LYS TYR THR ASN GLU GLN GLY SEQRES 24 A 402 LEU LEU ALA TYR PHE GLU ILE CYS THR PHE LEU ASN GLU SEQRES 25 A 402 GLY ALA THR GLU ILE PHE ASP ALA THR GLN GLU VAL PRO SEQRES 26 A 402 TYR ALA TYR LEU GLY ASN GLU TRP VAL GLY TYR ASP ASN SEQRES 27 A 402 VAL ARG SER PHE LYS LEU LYS ALA GLN TRP LEU LYS ASP SEQRES 28 A 402 ASN ASN LEU GLY GLY ALA VAL VAL TRP PRO LEU ASP MET SEQRES 29 A 402 ASP ASP PHE SER GLY SER PHE CYS HIS GLN GLY ARG PHE SEQRES 30 A 402 PRO LEU THR THR THR LEU LYS ARG ASP LEU ASN VAL HIS SEQRES 31 A 402 SER ALA SER CYS LYS ALA SER TYR ARG GLY GLU LEU HET GOL A 400 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *246(H2 O) HELIX 1 AA1 TRP A 10 ARG A 14 5 5 HELIX 2 AA2 PRO A 15 SER A 19 5 5 HELIX 3 AA3 LYS A 21 ILE A 25 5 5 HELIX 4 AA4 GLU A 50 GLY A 61 1 12 HELIX 5 AA5 LEU A 62 ARG A 65 5 4 HELIX 6 AA6 PRO A 82 SER A 90 1 9 HELIX 7 AA7 THR A 91 TYR A 109 1 19 HELIX 8 AA8 LYS A 129 HIS A 153 1 25 HELIX 9 AA9 PHE A 166 TYR A 174 1 9 HELIX 10 AB1 LYS A 175 LEU A 183 1 9 HELIX 11 AB2 ASP A 195 GLY A 199 5 5 HELIX 12 AB3 ILE A 214 LEU A 220 5 7 HELIX 13 AB4 ASN A 221 HIS A 232 1 12 HELIX 14 AB5 ALA A 235 GLU A 237 5 3 HELIX 15 AB6 TYR A 282 GLU A 291 1 10 HELIX 16 AB7 ASN A 317 ASN A 331 1 15 HELIX 17 AB8 PRO A 340 ASP A 344 5 5 HELIX 18 AB9 PHE A 356 LEU A 366 1 11 SHEET 1 AA110 GLU A 44 THR A 46 0 SHEET 2 AA110 HIS A 32 LYS A 41 -1 N GLY A 39 O THR A 46 SHEET 3 AA110 LYS A 70 GLY A 76 1 O ALA A 74 N TYR A 35 SHEET 4 AA110 GLY A 113 ASP A 117 1 O ASN A 115 N LEU A 73 SHEET 5 AA110 LEU A 158 GLY A 163 1 O THR A 160 N LEU A 116 SHEET 6 AA110 TYR A 185 VAL A 188 1 O GLN A 187 N GLY A 163 SHEET 7 AA110 LEU A 239 PRO A 244 1 O ILE A 240 N ILE A 186 SHEET 8 AA110 GLY A 335 TRP A 339 1 O VAL A 337 N PHE A 243 SHEET 9 AA110 GLN A 2 THR A 8 1 N MET A 4 O ALA A 336 SHEET 10 AA110 HIS A 32 LYS A 41 1 O ILE A 34 N TYR A 7 SHEET 1 AA2 3 THR A 264 ALA A 267 0 SHEET 2 AA2 3 TYR A 246 LEU A 252 -1 N ILE A 251 O VAL A 265 SHEET 3 AA2 3 LEU A 279 ALA A 281 -1 O LEU A 280 N GLY A 247 SHEET 1 AA3 5 THR A 264 ALA A 267 0 SHEET 2 AA3 5 TYR A 246 LEU A 252 -1 N ILE A 251 O VAL A 265 SHEET 3 AA3 5 GLU A 311 GLY A 314 -1 O TRP A 312 N PHE A 250 SHEET 4 AA3 5 VAL A 303 LEU A 308 -1 N ALA A 306 O VAL A 313 SHEET 5 AA3 5 THR A 294 ASP A 298 -1 N ILE A 296 O TYR A 305 SSBOND 1 CYS A 5 CYS A 30 1555 1555 2.03 SSBOND 2 CYS A 28 CYS A 373 1555 1555 2.04 SSBOND 3 CYS A 286 CYS A 351 1555 1555 2.05 CISPEP 1 ALA A 36 PHE A 37 0 0.76 CISPEP 2 GLN A 119 TYR A 120 0 1.74 CISPEP 3 TRP A 339 PRO A 340 0 -15.73 CRYST1 51.261 60.205 60.173 90.00 94.24 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019508 0.000000 0.001446 0.00000 SCALE2 0.000000 0.016610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016664 0.00000