HEADER DNA BINDING PROTEIN 05-JUN-23 8P9D TITLE CRYSTAL STRUCTURE OF P63-P73 HETEROTETRAMER (TETRAMERISATION DOMAIN) TITLE 2 IN COMPLEX WITH DARPIN 1810 A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR PROTEIN 63; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: P63,CHRONIC ULCERATIVE STOMATITIS PROTEIN,CUSP,KERATINOCYTE COMPND 5 TRANSCRIPTION FACTOR KET,TRANSFORMATION-RELATED PROTEIN 63,TP63,TUMOR COMPND 6 PROTEIN P73-LIKE,P73L,P40,P51; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TUMOR PROTEIN P73; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: P53-LIKE TRANSCRIPTION FACTOR,P53-RELATED PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DARPIN 1810 A2; COMPND 15 CHAIN: E, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP63, KET, P63, P73H, P73L, TP73L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TP73, P73; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 17 ORGANISM_COMMON: LLAMA; SOURCE 18 ORGANISM_TAXID: 9844; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS P63, P73, TETRAMERIZATION DOMAIN, DARPIN, HETEROTETRAMER, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,A.STRUBEL,V.DOETSCH,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (SGC) REVDAT 2 15-NOV-23 8P9D 1 COMPND SOURCE JRNL REMARK REVDAT 1 08-NOV-23 8P9D 0 JRNL AUTH A.STRUBEL,P.MUNICK,O.HARTMANN,A.CHAIKUAD,B.DREIER, JRNL AUTH 2 J.V.SCHAEFER,J.GEBEL,C.OSTERBURG,M.TUPPI,B.SCHAFER,V.BUCK, JRNL AUTH 3 M.ROSENFELDT,S.KNAPP,A.PLUCKTHUN,M.E.DIEFENBACHER,V.DOTSCH JRNL TITL DARPINS DETECT THE FORMATION OF HETERO-TETRAMERS OF P63 AND JRNL TITL 2 P73 IN EPITHELIAL TISSUES AND IN SQUAMOUS CELL CARCINOMA. JRNL REF CELL DEATH DIS V. 14 674 2023 JRNL PMID 37828008 JRNL DOI 10.1038/S41419-023-06213-0 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 906 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.26000 REMARK 3 B22 (A**2) : 5.12000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.631 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.320 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3510 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3299 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4751 ; 1.116 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7678 ; 1.119 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.804 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;37.120 ;25.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 640 ;17.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.793 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3914 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 629 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1738 ; 2.520 ; 4.881 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1737 ; 2.519 ; 4.880 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2162 ; 3.957 ; 7.310 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2163 ; 3.957 ; 7.311 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1772 ; 2.890 ; 5.223 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1772 ; 2.885 ; 5.223 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2589 ; 4.637 ; 7.695 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3783 ; 6.430 ;57.064 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3784 ; 6.430 ;57.074 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A C 1261 0.14 0.05 REMARK 3 2 B D 1260 0.13 0.05 REMARK 3 3 E F 3779 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 359 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1966 12.4851 -0.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.2257 REMARK 3 T33: 0.1160 T12: 0.0699 REMARK 3 T13: 0.1062 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 6.5145 L22: 4.6907 REMARK 3 L33: 8.7174 L12: 0.9967 REMARK 3 L13: 4.6366 L23: -0.5336 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: -0.5176 S13: -0.3617 REMARK 3 S21: 0.2468 S22: -0.1651 S23: 0.0662 REMARK 3 S31: -0.0898 S32: -0.1977 S33: 0.0867 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 350 B 397 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1179 6.3207 -0.1099 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.3754 REMARK 3 T33: 0.3338 T12: -0.0072 REMARK 3 T13: -0.1380 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 3.4447 L22: 1.5678 REMARK 3 L33: 11.8115 L12: 0.0394 REMARK 3 L13: -4.1952 L23: -1.5082 REMARK 3 S TENSOR REMARK 3 S11: 0.2687 S12: -0.5343 S13: -0.4641 REMARK 3 S21: 0.2710 S22: -0.1471 S23: -0.1660 REMARK 3 S31: 0.2391 S32: 0.4326 S33: -0.1216 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 359 C 404 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5530 9.2088 14.7828 REMARK 3 T TENSOR REMARK 3 T11: 0.2555 T22: 0.2960 REMARK 3 T33: 0.1713 T12: 0.0584 REMARK 3 T13: 0.0091 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 4.4825 L22: 6.0207 REMARK 3 L33: 8.5432 L12: 2.2672 REMARK 3 L13: -0.6731 L23: -3.0614 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.1087 S13: -0.4108 REMARK 3 S21: -0.7353 S22: -0.1454 S23: -0.1177 REMARK 3 S31: 0.2471 S32: 0.0887 S33: 0.1151 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 352 D 397 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2315 7.5361 14.6257 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.3082 REMARK 3 T33: 0.2109 T12: 0.0427 REMARK 3 T13: -0.0531 T23: 0.1305 REMARK 3 L TENSOR REMARK 3 L11: 3.0339 L22: 3.4352 REMARK 3 L33: 9.6194 L12: 1.5304 REMARK 3 L13: 0.6652 L23: 3.6068 REMARK 3 S TENSOR REMARK 3 S11: -0.1788 S12: 0.2186 S13: -0.3126 REMARK 3 S21: -0.4562 S22: 0.1024 S23: 0.2473 REMARK 3 S31: 0.3228 S32: -0.2876 S33: 0.0764 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 126 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7429 16.5348 -23.4808 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.2822 REMARK 3 T33: 0.0239 T12: -0.0218 REMARK 3 T13: 0.0215 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 5.7192 L22: 7.6796 REMARK 3 L33: 2.5637 L12: -3.4982 REMARK 3 L13: -0.1338 L23: 0.5964 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: 0.5991 S13: -0.0732 REMARK 3 S21: -0.2265 S22: 0.0804 S23: -0.1066 REMARK 3 S31: -0.2719 S32: 0.1201 S33: -0.1641 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 126 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3348 12.7902 38.9618 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.3286 REMARK 3 T33: 0.0596 T12: -0.0203 REMARK 3 T13: 0.0030 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 9.3020 L22: 4.8891 REMARK 3 L33: 3.7404 L12: -1.6713 REMARK 3 L13: -0.8452 L23: -0.5730 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.9614 S13: 0.1424 REMARK 3 S21: 0.3017 S22: -0.0953 S23: 0.0599 REMARK 3 S31: -0.1871 S32: -0.0010 S33: -0.0741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8P9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1M BIS-TRIS PROPANE PH REMARK 280 7.0, 0.2M SALICYLIC, SODIUM SALT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.36450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.61350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.59300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.61350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.36450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.59300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 ASP A 358 REMARK 465 GLN A 405 REMARK 465 HIS A 406 REMARK 465 LEU A 407 REMARK 465 LEU A 408 REMARK 465 GLN A 409 REMARK 465 LYS A 410 REMARK 465 GLN A 411 REMARK 465 THR A 412 REMARK 465 SER A 413 REMARK 465 ILE A 414 REMARK 465 GLN A 415 REMARK 465 SER A 416 REMARK 465 GLY B 349 REMARK 465 ARG B 398 REMARK 465 GLY C 356 REMARK 465 SER C 357 REMARK 465 ASP C 358 REMARK 465 GLN C 405 REMARK 465 HIS C 406 REMARK 465 LEU C 407 REMARK 465 LEU C 408 REMARK 465 GLN C 409 REMARK 465 LYS C 410 REMARK 465 GLN C 411 REMARK 465 THR C 412 REMARK 465 SER C 413 REMARK 465 ILE C 414 REMARK 465 GLN C 415 REMARK 465 SER C 416 REMARK 465 GLY D 349 REMARK 465 SER D 350 REMARK 465 ASP D 351 REMARK 465 ARG D 398 REMARK 465 GLY E 1 REMARK 465 GLY F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS E 116 OD1 ASN F 115 2554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 353 -165.32 -79.94 REMARK 500 HIS E 49 79.27 -106.53 REMARK 500 ALA F 28 143.05 -37.44 REMARK 500 HIS F 49 77.29 -106.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 8P9D A 358 416 UNP Q9H3D4 P63_HUMAN 397 455 DBREF 8P9D B 351 398 UNP O15350 P73_HUMAN 351 398 DBREF 8P9D C 358 416 UNP Q9H3D4 P63_HUMAN 397 455 DBREF 8P9D D 351 398 UNP O15350 P73_HUMAN 351 398 DBREF 8P9D E 1 126 PDB 8P9D 8P9D 1 126 DBREF 8P9D F 1 126 PDB 8P9D 8P9D 1 126 SEQADV 8P9D GLY A 356 UNP Q9H3D4 EXPRESSION TAG SEQADV 8P9D SER A 357 UNP Q9H3D4 EXPRESSION TAG SEQADV 8P9D GLU A 377 UNP Q9H3D4 LYS 416 CONFLICT SEQADV 8P9D GLY B 349 UNP O15350 EXPRESSION TAG SEQADV 8P9D SER B 350 UNP O15350 EXPRESSION TAG SEQADV 8P9D LYS B 363 UNP O15350 GLU 363 CONFLICT SEQADV 8P9D GLY C 356 UNP Q9H3D4 EXPRESSION TAG SEQADV 8P9D SER C 357 UNP Q9H3D4 EXPRESSION TAG SEQADV 8P9D GLU C 377 UNP Q9H3D4 LYS 416 CONFLICT SEQADV 8P9D GLY D 349 UNP O15350 EXPRESSION TAG SEQADV 8P9D SER D 350 UNP O15350 EXPRESSION TAG SEQADV 8P9D LYS D 363 UNP O15350 GLU 363 CONFLICT SEQRES 1 A 61 GLY SER ASP ASP GLU LEU LEU TYR LEU PRO VAL ARG GLY SEQRES 2 A 61 ARG GLU THR TYR GLU MET LEU LEU GLU ILE LYS GLU SER SEQRES 3 A 61 LEU GLU LEU MET GLN TYR LEU PRO GLN HIS THR ILE GLU SEQRES 4 A 61 THR TYR ARG GLN GLN GLN GLN GLN GLN HIS GLN HIS LEU SEQRES 5 A 61 LEU GLN LYS GLN THR SER ILE GLN SER SEQRES 1 B 50 GLY SER ASP GLU ASP THR TYR TYR LEU GLN VAL ARG GLY SEQRES 2 B 50 ARG LYS ASN PHE GLU ILE LEU MET LYS LEU LYS GLU SER SEQRES 3 B 50 LEU GLU LEU MET GLU LEU VAL PRO GLN PRO LEU VAL ASP SEQRES 4 B 50 SER TYR ARG GLN GLN GLN GLN LEU LEU GLN ARG SEQRES 1 C 61 GLY SER ASP ASP GLU LEU LEU TYR LEU PRO VAL ARG GLY SEQRES 2 C 61 ARG GLU THR TYR GLU MET LEU LEU GLU ILE LYS GLU SER SEQRES 3 C 61 LEU GLU LEU MET GLN TYR LEU PRO GLN HIS THR ILE GLU SEQRES 4 C 61 THR TYR ARG GLN GLN GLN GLN GLN GLN HIS GLN HIS LEU SEQRES 5 C 61 LEU GLN LYS GLN THR SER ILE GLN SER SEQRES 1 D 50 GLY SER ASP GLU ASP THR TYR TYR LEU GLN VAL ARG GLY SEQRES 2 D 50 ARG LYS ASN PHE GLU ILE LEU MET LYS LEU LYS GLU SER SEQRES 3 D 50 LEU GLU LEU MET GLU LEU VAL PRO GLN PRO LEU VAL ASP SEQRES 4 D 50 SER TYR ARG GLN GLN GLN GLN LEU LEU GLN ARG SEQRES 1 E 126 GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA ALA ILE SEQRES 2 E 126 ASN GLY GLN LEU ASP GLU VAL ARG ILE LEU MET ALA ASN SEQRES 3 E 126 GLY ALA ASP VAL ASN ALA ALA ASP ALA LEU GLY VAL THR SEQRES 4 E 126 PRO LEU HIS LEU ALA ALA VAL TRP GLY HIS LEU GLU ILE SEQRES 5 E 126 VAL GLU VAL LEU LEU LYS ALA GLY ALA ASP VAL ASN ALA SEQRES 6 E 126 GLN ASP GLN HIS GLY ASN THR PRO LEU HIS LEU ALA ALA SEQRES 7 E 126 TRP ALA GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS SEQRES 8 E 126 HIS GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE GLY LYS SEQRES 9 E 126 THR PRO PHE ASP LEU ALA ILE ASP ASN GLY ASN LYS ASP SEQRES 10 E 126 ILE ALA GLU VAL LEU GLN LYS ALA ALA SEQRES 1 F 126 GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA ALA ILE SEQRES 2 F 126 ASN GLY GLN LEU ASP GLU VAL ARG ILE LEU MET ALA ASN SEQRES 3 F 126 GLY ALA ASP VAL ASN ALA ALA ASP ALA LEU GLY VAL THR SEQRES 4 F 126 PRO LEU HIS LEU ALA ALA VAL TRP GLY HIS LEU GLU ILE SEQRES 5 F 126 VAL GLU VAL LEU LEU LYS ALA GLY ALA ASP VAL ASN ALA SEQRES 6 F 126 GLN ASP GLN HIS GLY ASN THR PRO LEU HIS LEU ALA ALA SEQRES 7 F 126 TRP ALA GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS SEQRES 8 F 126 HIS GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE GLY LYS SEQRES 9 F 126 THR PRO PHE ASP LEU ALA ILE ASP ASN GLY ASN LYS ASP SEQRES 10 F 126 ILE ALA GLU VAL LEU GLN LYS ALA ALA FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 GLY A 368 LEU A 384 1 17 HELIX 2 AA2 MET A 385 LEU A 388 5 4 HELIX 3 AA3 PRO A 389 GLN A 402 1 14 HELIX 4 AA4 GLY B 361 MET B 378 1 18 HELIX 5 AA5 GLU B 379 VAL B 381 5 3 HELIX 6 AA6 PRO B 382 GLN B 394 1 13 HELIX 7 AA7 LEU B 395 GLN B 397 5 3 HELIX 8 AA8 GLY C 368 LEU C 384 1 17 HELIX 9 AA9 MET C 385 LEU C 388 5 4 HELIX 10 AB1 PRO C 389 GLN C 402 1 14 HELIX 11 AB2 GLY D 361 MET D 378 1 18 HELIX 12 AB3 GLU D 379 VAL D 381 5 3 HELIX 13 AB4 PRO D 382 LEU D 396 1 15 HELIX 14 AB5 ASP E 3 ASN E 14 1 12 HELIX 15 AB6 GLN E 16 ASN E 26 1 11 HELIX 16 AB7 THR E 39 GLY E 48 1 10 HELIX 17 AB8 HIS E 49 ALA E 59 1 11 HELIX 18 AB9 THR E 72 GLY E 81 1 10 HELIX 19 AC1 HIS E 82 HIS E 92 1 11 HELIX 20 AC2 THR E 105 ASN E 113 1 9 HELIX 21 AC3 ASN E 115 ALA E 125 1 11 HELIX 22 AC4 ASP F 3 ASN F 14 1 12 HELIX 23 AC5 GLN F 16 ASN F 26 1 11 HELIX 24 AC6 THR F 39 GLY F 48 1 10 HELIX 25 AC7 HIS F 49 ALA F 59 1 11 HELIX 26 AC8 THR F 72 GLY F 81 1 10 HELIX 27 AC9 HIS F 82 HIS F 92 1 11 HELIX 28 AD1 THR F 105 ASN F 113 1 9 HELIX 29 AD2 ASN F 115 ALA F 125 1 11 SHEET 1 AA1 2 LEU A 361 ARG A 367 0 SHEET 2 AA1 2 LEU C 361 ARG C 367 -1 O VAL C 366 N LEU A 362 SHEET 1 AA2 2 THR B 354 ARG B 360 0 SHEET 2 AA2 2 THR D 354 ARG D 360 -1 O LEU D 357 N LEU B 357 CRYST1 40.729 113.186 135.227 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007395 0.00000