HEADER REPLICATION 06-JUN-23 8P9O TITLE PCNA FROM CHAETOMIUM THERMOPHILUM IN COMPLEX WITH POLD3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PCNA; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FIRST 4 RESIDUES REMAIN AFTER AFFINITY TAG COMPND 7 CLEAVAGE. FLEXIBLE LOOPS AND SIDECHAINS HAVE BEEN OMITTED OR COMPND 8 TRUNCATED.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SYNTHETIC PEPTIDE CORRESPONDING TO AMINO ACIDS 437 TO 451 COMPND 11 OF POLD3 FROM CHAETOMIUM THERMOPHILUM; COMPND 12 CHAIN: P; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: N-TERMINAL RESIDUES OMITTED DUE TO FLEXIBILITY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA DSM 1495; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 STRAIN: DSM 1495; SOURCE 5 GENE: CTHT_0061010; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-2 (PLYSS); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEHISTEV-CTPCNA; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA DSM 1495; SOURCE 14 ORGANISM_TAXID: 759272 KEYWDS DNA CLAMP, DNA REPLICATION, HOMOTRIMER, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.S.ALPHEY,C.B.WOLFORD,S.A.MACNEILL REVDAT 2 24-JAN-24 8P9O 1 JRNL REVDAT 1 13-DEC-23 8P9O 0 JRNL AUTH M.S.ALPHEY,C.B.WOLFORD,S.A.MACNEILL JRNL TITL CANONICAL BINDING OF CHAETOMIUM THERMOPHILUM DNA POLYMERASE JRNL TITL 2 DELTA / ZETA SUBUNIT POLD3 AND FLAP ENDONUCLEASE FEN1 TO JRNL TITL 3 PCNA. JRNL REF FRONT MOL BIOSCI V. 10 20648 2023 JRNL REFN ESSN 2296-889X JRNL PMID 38223238 JRNL DOI 10.3389/FMOLB.2023.1320648 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 24703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 1.12000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.05000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5771 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5550 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7821 ; 0.962 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12777 ; 0.340 ; 1.563 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 751 ; 7.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 19 ; 3.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1007 ;15.267 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 964 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6587 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1173 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3031 ; 0.803 ; 2.004 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3031 ; 0.803 ; 2.004 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3770 ; 1.360 ; 3.595 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3771 ; 1.361 ; 3.596 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2740 ; 0.932 ; 2.099 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2741 ; 0.931 ; 2.100 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4051 ; 1.579 ; 3.838 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5845 ; 3.003 ;21.560 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5834 ; 2.983 ;21.450 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0414 11.1208 -10.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.0289 T22: 0.0126 REMARK 3 T33: 0.0581 T12: 0.0003 REMARK 3 T13: 0.0168 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.9742 L22: 0.7542 REMARK 3 L33: 3.7846 L12: -0.1926 REMARK 3 L13: -0.0927 L23: 0.9753 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.1508 S13: 0.1374 REMARK 3 S21: -0.1217 S22: -0.0211 S23: 0.0240 REMARK 3 S31: -0.1700 S32: -0.0057 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8241 -8.9526 -23.6291 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.0549 REMARK 3 T33: 0.0385 T12: -0.0062 REMARK 3 T13: 0.0080 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 3.3642 L22: 1.5653 REMARK 3 L33: 2.2013 L12: -0.6996 REMARK 3 L13: -0.7563 L23: 0.2960 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.2790 S13: -0.1543 REMARK 3 S21: -0.1563 S22: -0.0728 S23: 0.0378 REMARK 3 S31: 0.1377 S32: -0.0917 S33: 0.0479 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8709 -17.8558 -10.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.1453 REMARK 3 T33: 0.0183 T12: 0.0505 REMARK 3 T13: 0.0319 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 8.5566 L22: 5.1357 REMARK 3 L33: 6.9074 L12: 0.4865 REMARK 3 L13: 0.5208 L23: 2.8774 REMARK 3 S TENSOR REMARK 3 S11: 0.3534 S12: -0.5853 S13: 0.1536 REMARK 3 S21: 0.2533 S22: -0.3724 S23: -0.0206 REMARK 3 S31: 0.2839 S32: -0.3296 S33: 0.0190 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4536 -15.0557 -0.7453 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0448 REMARK 3 T33: 0.0941 T12: 0.0113 REMARK 3 T13: 0.0224 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.1607 L22: 1.0979 REMARK 3 L33: 2.7410 L12: 0.3883 REMARK 3 L13: 1.0286 L23: 0.4412 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: 0.1424 S13: -0.0772 REMARK 3 S21: -0.0232 S22: -0.0857 S23: -0.0091 REMARK 3 S31: 0.3775 S32: 0.0624 S33: -0.0603 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 122 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5820 11.0448 24.4047 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.1039 REMARK 3 T33: 0.0583 T12: -0.0662 REMARK 3 T13: 0.0443 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 2.6931 L22: 3.4312 REMARK 3 L33: 1.8674 L12: -2.2930 REMARK 3 L13: 0.0378 L23: -1.2822 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: 0.0482 S13: -0.0833 REMARK 3 S21: 0.0358 S22: -0.0484 S23: -0.0342 REMARK 3 S31: 0.0545 S32: 0.0492 S33: 0.1268 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 123 C 255 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7043 19.4177 14.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0363 REMARK 3 T33: 0.0862 T12: -0.0219 REMARK 3 T13: 0.0230 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.8810 L22: 1.8145 REMARK 3 L33: 2.9970 L12: 0.4667 REMARK 3 L13: 1.0582 L23: -0.9544 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.1648 S13: 0.3749 REMARK 3 S21: -0.0460 S22: 0.0212 S23: 0.0468 REMARK 3 S31: -0.2105 S32: -0.0042 S33: 0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8P9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE/CITRATE, PH4.2, 40% REMARK 280 V/V PEG300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 LYS A 164 REMARK 465 ASP A 165 REMARK 465 GLY A 256 REMARK 465 ASP A 257 REMARK 465 ASP A 258 REMARK 465 GLU A 259 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 SER B 106 REMARK 465 GLU B 107 REMARK 465 LEU B 126 REMARK 465 GLY B 127 REMARK 465 ILE B 128 REMARK 465 PRO B 129 REMARK 465 GLU B 130 REMARK 465 THR B 131 REMARK 465 GLY B 256 REMARK 465 ASP B 257 REMARK 465 ASP B 258 REMARK 465 GLU B 259 REMARK 465 GLY C -2 REMARK 465 ALA C -1 REMARK 465 MET C 0 REMARK 465 ALA C 95 REMARK 465 SER C 106 REMARK 465 GLU C 107 REMARK 465 GLU C 124 REMARK 465 HIS C 125 REMARK 465 ASP C 165 REMARK 465 GLY C 256 REMARK 465 ASP C 257 REMARK 465 ASP C 258 REMARK 465 GLU C 259 REMARK 465 GLY P 437 REMARK 465 LYS P 438 REMARK 465 GLY P 439 REMARK 465 GLY P 440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLN B 38 CG CD OE1 NE2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 94 CG OD1 OD2 REMARK 470 ASP B 109 CG OD1 OD2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 ASN C 42 CG OD1 ND2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 80 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 84 CG OD1 ND2 REMARK 470 GLU C 85 CG CD OE1 OE2 REMARK 470 THR C 108 OG1 CG2 REMARK 470 ASP C 109 CG OD1 OD2 REMARK 470 ASP C 120 CG OD1 OD2 REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 470 GLU C 132 CG CD OE1 OE2 REMARK 470 ASN C 163 CG OD1 ND2 REMARK 470 LYS C 164 CG CD CE NZ REMARK 470 GLU C 189 CG CD OE1 OE2 REMARK 470 GLU C 198 CG CD OE1 OE2 REMARK 470 LYS C 217 CG CD CE NZ REMARK 470 GLU C 232 CG CD OE1 OE2 REMARK 470 ILE C 255 CG1 CG2 CD1 REMARK 470 LYS P 451 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 109 72.49 -103.55 REMARK 500 HIS C 44 34.97 70.59 REMARK 500 SER C 58 93.51 -160.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 8P9O A 2 259 UNP G0SF70 PCNA_CHATD 2 259 DBREF 8P9O B 2 259 UNP G0SF70 PCNA_CHATD 2 259 DBREF 8P9O C 2 259 UNP G0SF70 PCNA_CHATD 2 259 DBREF 8P9O P 437 451 PDB 8P9O 8P9O 437 451 SEQADV 8P9O GLY A -2 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O ALA A -1 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O MET A 0 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O ALA A 1 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O GLY B -2 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O ALA B -1 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O MET B 0 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O ALA B 1 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O GLY C -2 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O ALA C -1 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O MET C 0 UNP G0SF70 EXPRESSION TAG SEQADV 8P9O ALA C 1 UNP G0SF70 EXPRESSION TAG SEQRES 1 A 262 GLY ALA MET ALA LEU GLU ALA ARG LEU GLU GLN ALA SER SEQRES 2 A 262 ILE LEU LYS LYS VAL VAL ASP ALA ILE LYS ASP LEU VAL SEQRES 3 A 262 GLN ASP CYS ASN PHE ASP CYS ASN ASP SER GLY ILE ALA SEQRES 4 A 262 LEU GLN ALA MET ASP ASN SER HIS VAL ALA LEU VAL SER SEQRES 5 A 262 MET MET LEU LYS ALA GLU GLY PHE SER PRO TYR ARG CYS SEQRES 6 A 262 ASP ARG ASN ILE ALA LEU GLY VAL ASN LEU THR SER LEU SEQRES 7 A 262 THR LYS VAL LEU ARG ALA ALA GLN ASN GLU ASP ILE LEU SEQRES 8 A 262 THR LEU LYS ALA GLU ASP ALA PRO ASP VAL LEU ASN LEU SEQRES 9 A 262 VAL PHE GLU SER SER GLU THR ASP ARG ILE SER GLU TYR SEQRES 10 A 262 ASP LEU LYS LEU MET ASP ILE ASP GLN GLU HIS LEU GLY SEQRES 11 A 262 ILE PRO GLU THR GLU TYR ALA ALA THR ILE THR MET PRO SEQRES 12 A 262 SER ASN GLU PHE LYS ARG ILE THR THR ASP LEU MET ALA SEQRES 13 A 262 MET SER GLU SER VAL THR ILE GLU ALA ASN LYS ASP GLY SEQRES 14 A 262 VAL LYS PHE SER CYS GLN GLY ASP ILE GLY ASN GLY SER SEQRES 15 A 262 VAL THR LEU ARG GLN HIS THR ASN VAL GLU LYS PRO ASN SEQRES 16 A 262 GLU SER ILE GLU ILE GLU LEU SER GLU PRO VAL SER LEU SEQRES 17 A 262 THR PHE SER LEU LYS TYR LEU VAL ASN PHE CYS LYS ALA SEQRES 18 A 262 SER ALA LEU SER ASN THR VAL LYS ILE CYS LEU SER ASN SEQRES 19 A 262 GLU VAL PRO LEU LEU VAL GLU TYR SER LEU GLY GLY SER SEQRES 20 A 262 SER TYR LEU ARG PHE TYR LEU ALA PRO LYS ILE GLY ASP SEQRES 21 A 262 ASP GLU SEQRES 1 B 262 GLY ALA MET ALA LEU GLU ALA ARG LEU GLU GLN ALA SER SEQRES 2 B 262 ILE LEU LYS LYS VAL VAL ASP ALA ILE LYS ASP LEU VAL SEQRES 3 B 262 GLN ASP CYS ASN PHE ASP CYS ASN ASP SER GLY ILE ALA SEQRES 4 B 262 LEU GLN ALA MET ASP ASN SER HIS VAL ALA LEU VAL SER SEQRES 5 B 262 MET MET LEU LYS ALA GLU GLY PHE SER PRO TYR ARG CYS SEQRES 6 B 262 ASP ARG ASN ILE ALA LEU GLY VAL ASN LEU THR SER LEU SEQRES 7 B 262 THR LYS VAL LEU ARG ALA ALA GLN ASN GLU ASP ILE LEU SEQRES 8 B 262 THR LEU LYS ALA GLU ASP ALA PRO ASP VAL LEU ASN LEU SEQRES 9 B 262 VAL PHE GLU SER SER GLU THR ASP ARG ILE SER GLU TYR SEQRES 10 B 262 ASP LEU LYS LEU MET ASP ILE ASP GLN GLU HIS LEU GLY SEQRES 11 B 262 ILE PRO GLU THR GLU TYR ALA ALA THR ILE THR MET PRO SEQRES 12 B 262 SER ASN GLU PHE LYS ARG ILE THR THR ASP LEU MET ALA SEQRES 13 B 262 MET SER GLU SER VAL THR ILE GLU ALA ASN LYS ASP GLY SEQRES 14 B 262 VAL LYS PHE SER CYS GLN GLY ASP ILE GLY ASN GLY SER SEQRES 15 B 262 VAL THR LEU ARG GLN HIS THR ASN VAL GLU LYS PRO ASN SEQRES 16 B 262 GLU SER ILE GLU ILE GLU LEU SER GLU PRO VAL SER LEU SEQRES 17 B 262 THR PHE SER LEU LYS TYR LEU VAL ASN PHE CYS LYS ALA SEQRES 18 B 262 SER ALA LEU SER ASN THR VAL LYS ILE CYS LEU SER ASN SEQRES 19 B 262 GLU VAL PRO LEU LEU VAL GLU TYR SER LEU GLY GLY SER SEQRES 20 B 262 SER TYR LEU ARG PHE TYR LEU ALA PRO LYS ILE GLY ASP SEQRES 21 B 262 ASP GLU SEQRES 1 C 262 GLY ALA MET ALA LEU GLU ALA ARG LEU GLU GLN ALA SER SEQRES 2 C 262 ILE LEU LYS LYS VAL VAL ASP ALA ILE LYS ASP LEU VAL SEQRES 3 C 262 GLN ASP CYS ASN PHE ASP CYS ASN ASP SER GLY ILE ALA SEQRES 4 C 262 LEU GLN ALA MET ASP ASN SER HIS VAL ALA LEU VAL SER SEQRES 5 C 262 MET MET LEU LYS ALA GLU GLY PHE SER PRO TYR ARG CYS SEQRES 6 C 262 ASP ARG ASN ILE ALA LEU GLY VAL ASN LEU THR SER LEU SEQRES 7 C 262 THR LYS VAL LEU ARG ALA ALA GLN ASN GLU ASP ILE LEU SEQRES 8 C 262 THR LEU LYS ALA GLU ASP ALA PRO ASP VAL LEU ASN LEU SEQRES 9 C 262 VAL PHE GLU SER SER GLU THR ASP ARG ILE SER GLU TYR SEQRES 10 C 262 ASP LEU LYS LEU MET ASP ILE ASP GLN GLU HIS LEU GLY SEQRES 11 C 262 ILE PRO GLU THR GLU TYR ALA ALA THR ILE THR MET PRO SEQRES 12 C 262 SER ASN GLU PHE LYS ARG ILE THR THR ASP LEU MET ALA SEQRES 13 C 262 MET SER GLU SER VAL THR ILE GLU ALA ASN LYS ASP GLY SEQRES 14 C 262 VAL LYS PHE SER CYS GLN GLY ASP ILE GLY ASN GLY SER SEQRES 15 C 262 VAL THR LEU ARG GLN HIS THR ASN VAL GLU LYS PRO ASN SEQRES 16 C 262 GLU SER ILE GLU ILE GLU LEU SER GLU PRO VAL SER LEU SEQRES 17 C 262 THR PHE SER LEU LYS TYR LEU VAL ASN PHE CYS LYS ALA SEQRES 18 C 262 SER ALA LEU SER ASN THR VAL LYS ILE CYS LEU SER ASN SEQRES 19 C 262 GLU VAL PRO LEU LEU VAL GLU TYR SER LEU GLY GLY SER SEQRES 20 C 262 SER TYR LEU ARG PHE TYR LEU ALA PRO LYS ILE GLY ASP SEQRES 21 C 262 ASP GLU SEQRES 1 P 15 GLY LYS GLY GLY GLN GLY SER ILE MET SER TRP PHE ALA SEQRES 2 P 15 LYS LYS FORMUL 5 HOH *152(H2 O) HELIX 1 AA1 ALA A 9 ALA A 18 1 10 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 ARG A 80 1 9 HELIX 4 AA4 SER A 141 ALA A 153 1 13 HELIX 5 AA5 LYS A 190 SER A 194 5 5 HELIX 6 AA6 LEU A 209 CYS A 216 1 8 HELIX 7 AA7 LYS A 217 LEU A 221 5 5 HELIX 8 AA8 ALA B 9 ALA B 18 1 10 HELIX 9 AA9 GLU B 55 PHE B 57 5 3 HELIX 10 AB1 LEU B 72 ARG B 80 1 9 HELIX 11 AB2 SER B 141 ALA B 153 1 13 HELIX 12 AB3 LYS B 190 SER B 194 5 5 HELIX 13 AB4 LEU B 209 CYS B 216 1 8 HELIX 14 AB5 LYS B 217 SER B 222 5 6 HELIX 15 AB6 ALA C 9 ALA C 18 1 10 HELIX 16 AB7 GLU C 55 PHE C 57 5 3 HELIX 17 AB8 LEU C 72 ARG C 80 1 9 HELIX 18 AB9 SER C 141 ALA C 153 1 13 HELIX 19 AC1 LYS C 190 SER C 194 5 5 HELIX 20 AC2 LEU C 209 CYS C 216 1 8 HELIX 21 AC3 LYS C 217 SER C 222 5 6 HELIX 22 AC4 SER P 443 TRP P 447 5 5 SHEET 1 AA1 9 TYR A 60 CYS A 62 0 SHEET 2 AA1 9 LEU A 2 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 AA1 9 ILE A 87 ALA A 92 -1 O LEU A 88 N LEU A 6 SHEET 4 AA1 9 VAL A 98 GLU A 104 -1 O ASN A 100 N LYS A 91 SHEET 5 AA1 9 ARG A 110 LYS A 117 -1 O SER A 112 N PHE A 103 SHEET 6 AA1 9 GLY C 176 LEU C 182 -1 O THR C 181 N ILE A 111 SHEET 7 AA1 9 VAL C 167 GLY C 173 -1 N VAL C 167 O LEU C 182 SHEET 8 AA1 9 SER C 157 ALA C 162 -1 N THR C 159 O SER C 170 SHEET 9 AA1 9 VAL C 203 SER C 208 -1 O LEU C 205 N ILE C 160 SHEET 1 AA2 9 ILE A 66 ASN A 71 0 SHEET 2 AA2 9 ASP A 25 ASN A 31 -1 N CYS A 30 O ILE A 66 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ALA A 36 N ASP A 29 SHEET 4 AA2 9 ALA A 46 LYS A 53 -1 O VAL A 48 N ALA A 39 SHEET 5 AA2 9 TYR A 246 LEU A 251 -1 O ARG A 248 N SER A 49 SHEET 6 AA2 9 LEU A 235 SER A 240 -1 N LEU A 235 O LEU A 251 SHEET 7 AA2 9 THR A 224 LEU A 229 -1 N CYS A 228 O LEU A 236 SHEET 8 AA2 9 ALA A 135 PRO A 140 -1 N ILE A 137 O ILE A 227 SHEET 9 AA2 9 GLU A 196 LEU A 199 -1 O GLU A 196 N THR A 138 SHEET 1 AA3 9 VAL A 203 SER A 208 0 SHEET 2 AA3 9 SER A 157 ALA A 162 -1 N ILE A 160 O LEU A 205 SHEET 3 AA3 9 VAL A 167 GLY A 173 -1 O SER A 170 N THR A 159 SHEET 4 AA3 9 GLY A 176 LEU A 182 -1 O LEU A 182 N VAL A 167 SHEET 5 AA3 9 ARG B 110 LYS B 117 -1 O ILE B 111 N THR A 181 SHEET 6 AA3 9 VAL B 98 GLU B 104 -1 N PHE B 103 O SER B 112 SHEET 7 AA3 9 ILE B 87 ALA B 92 -1 N ILE B 87 O GLU B 104 SHEET 8 AA3 9 LEU B 2 LEU B 6 -1 N LEU B 6 O LEU B 88 SHEET 9 AA3 9 TYR B 60 CYS B 62 -1 O ARG B 61 N GLU B 3 SHEET 1 AA4 9 ILE B 66 ASN B 71 0 SHEET 2 AA4 9 ASP B 25 ASN B 31 -1 N CYS B 30 O ILE B 66 SHEET 3 AA4 9 GLY B 34 MET B 40 -1 O ALA B 36 N ASP B 29 SHEET 4 AA4 9 ALA B 46 LYS B 53 -1 O VAL B 48 N ALA B 39 SHEET 5 AA4 9 TYR B 246 LEU B 251 -1 O ARG B 248 N SER B 49 SHEET 6 AA4 9 LEU B 235 SER B 240 -1 N LEU B 235 O LEU B 251 SHEET 7 AA4 9 THR B 224 LEU B 229 -1 N CYS B 228 O LEU B 236 SHEET 8 AA4 9 ALA B 135 PRO B 140 -1 N ILE B 137 O ILE B 227 SHEET 9 AA4 9 GLU B 196 LEU B 199 -1 O GLU B 196 N THR B 138 SHEET 1 AA5 9 VAL B 203 SER B 208 0 SHEET 2 AA5 9 SER B 157 ALA B 162 -1 N ILE B 160 O LEU B 205 SHEET 3 AA5 9 GLY B 166 GLY B 173 -1 O SER B 170 N THR B 159 SHEET 4 AA5 9 GLY B 176 ARG B 183 -1 O LEU B 182 N VAL B 167 SHEET 5 AA5 9 ILE C 111 LYS C 117 -1 O ILE C 111 N THR B 181 SHEET 6 AA5 9 VAL C 98 GLU C 104 -1 N LEU C 99 O LEU C 116 SHEET 7 AA5 9 ILE C 87 ALA C 92 -1 N LYS C 91 O ASN C 100 SHEET 8 AA5 9 LEU C 2 LEU C 6 -1 N LEU C 6 O LEU C 88 SHEET 9 AA5 9 TYR C 60 CYS C 62 -1 O ARG C 61 N GLU C 3 SHEET 1 AA6 9 ILE C 66 ASN C 71 0 SHEET 2 AA6 9 ASP C 25 ASN C 31 -1 N CYS C 30 O ILE C 66 SHEET 3 AA6 9 GLY C 34 MET C 40 -1 O ALA C 36 N ASP C 29 SHEET 4 AA6 9 ALA C 46 LYS C 53 -1 O VAL C 48 N ALA C 39 SHEET 5 AA6 9 TYR C 246 LEU C 251 -1 O ARG C 248 N SER C 49 SHEET 6 AA6 9 LEU C 235 SER C 240 -1 N VAL C 237 O PHE C 249 SHEET 7 AA6 9 THR C 224 LEU C 229 -1 N CYS C 228 O LEU C 236 SHEET 8 AA6 9 ALA C 135 PRO C 140 -1 N ILE C 137 O ILE C 227 SHEET 9 AA6 9 GLU C 196 LEU C 199 -1 O GLU C 196 N THR C 138 CISPEP 1 SER A 58 PRO A 59 0 -1.71 CISPEP 2 SER B 58 PRO B 59 0 -0.50 CISPEP 3 SER C 58 PRO C 59 0 0.65 CRYST1 55.840 56.391 62.860 90.93 90.55 99.48 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017908 0.002990 0.000226 0.00000 SCALE2 0.000000 0.017979 0.000325 0.00000 SCALE3 0.000000 0.000000 0.015912 0.00000