HEADER TRANSFERASE 08-JUN-23 8PAS TITLE CRYSTAL STRUCTURE OF MAP4K1 WITH A SMOL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 5 KINASE 1,MEK KINASE KINASE 1,MEKKK 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP4K1, HPK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, INHIBITOR, DRUG DISCOVERY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FRIBERG REVDAT 1 26-JUN-24 8PAS 0 JRNL AUTH J.MOWAT,R.CARRETERO,G.LEDER,N.AIGUABELLA FONT,R.NEUHAUS, JRNL AUTH 2 S.BERNDT,J.GUENTHER,A.FRIBERG,M.SCHAEFER,H.BRIEM,M.RASCHKE, JRNL AUTH 3 H.MIYATAKE ONDOZABAL,B.BUCHMANN,U.BOEMER,I.HARTUNG, JRNL AUTH 4 R.OFFRINGA JRNL TITL IDENTIFICATION AND OPTIMIZATION OF AZAINDOLE BASED MAP4K1 JRNL TITL 2 INHIBITORS AND THE DISCOVERY OF BAY-405 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 18239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 811 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -4.57000 REMARK 3 B33 (A**2) : 2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.494 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.407 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.399 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4461 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4370 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6027 ; 1.887 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10077 ; 1.382 ; 1.609 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 535 ; 8.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;36.029 ;22.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 800 ;19.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4895 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 973 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2161 ; 2.898 ; 4.638 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2160 ; 2.898 ; 4.637 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2689 ; 4.687 ; 6.946 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2690 ; 4.687 ; 6.948 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2300 ; 2.853 ; 4.969 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2301 ; 2.852 ; 4.969 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3339 ; 4.682 ; 7.314 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4879 ; 6.885 ;53.074 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4878 ; 6.884 ;53.083 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 7907 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9062 5.1982 -26.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.7495 T22: 0.3344 REMARK 3 T33: 0.8109 T12: 0.0682 REMARK 3 T13: -0.3121 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.9180 L22: 5.0806 REMARK 3 L33: 2.1599 L12: 0.6385 REMARK 3 L13: 0.5367 L23: 0.3182 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.0332 S13: 0.7936 REMARK 3 S21: 0.0475 S22: -0.0774 S23: 0.8752 REMARK 3 S31: -0.3986 S32: -0.1212 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1952 12.8108 -20.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.4935 T22: 0.2197 REMARK 3 T33: 0.1790 T12: -0.1528 REMARK 3 T13: -0.2799 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 2.9159 L22: 10.5138 REMARK 3 L33: 3.5235 L12: 2.6799 REMARK 3 L13: 2.5542 L23: 5.5352 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.2608 S13: 0.0393 REMARK 3 S21: 0.0185 S22: 0.0785 S23: -0.1569 REMARK 3 S31: 0.1295 S32: 0.1212 S33: -0.1039 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 155 REMARK 3 RESIDUE RANGE : A 192 A 999 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9146 -14.1901 -26.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.4474 T22: 0.0055 REMARK 3 T33: 0.2072 T12: -0.0060 REMARK 3 T13: -0.2545 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.3493 L22: 4.8727 REMARK 3 L33: 2.4097 L12: 0.2931 REMARK 3 L13: 0.7773 L23: 0.3061 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.0309 S13: -0.0367 REMARK 3 S21: -0.2979 S22: -0.0173 S23: -0.3523 REMARK 3 S31: -0.0371 S32: 0.0559 S33: 0.0627 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6199 7.7136 9.3993 REMARK 3 T TENSOR REMARK 3 T11: 1.0097 T22: 0.3121 REMARK 3 T33: 0.5558 T12: 0.0159 REMARK 3 T13: -0.1925 T23: 0.0907 REMARK 3 L TENSOR REMARK 3 L11: 2.4466 L22: 5.8186 REMARK 3 L33: 2.6182 L12: 1.4094 REMARK 3 L13: 0.3873 L23: 0.5660 REMARK 3 S TENSOR REMARK 3 S11: -0.1627 S12: -0.3378 S13: -0.5699 REMARK 3 S21: 1.0079 S22: -0.1037 S23: 0.0520 REMARK 3 S31: 0.8333 S32: 0.0644 S33: 0.2664 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 191 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6189 0.6276 -13.7059 REMARK 3 T TENSOR REMARK 3 T11: 0.7277 T22: 0.2982 REMARK 3 T33: 0.6573 T12: -0.0149 REMARK 3 T13: -0.3870 T23: -0.2101 REMARK 3 L TENSOR REMARK 3 L11: 4.0504 L22: 7.4449 REMARK 3 L33: 1.8788 L12: 5.2738 REMARK 3 L13: 2.7466 L23: 3.5186 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.3762 S13: -0.1330 REMARK 3 S21: -0.2868 S22: -0.1027 S23: -0.4535 REMARK 3 S31: -0.0635 S32: -0.3047 S33: 0.0630 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 155 REMARK 3 RESIDUE RANGE : B 192 B 999 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9505 27.1655 -9.7091 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.0028 REMARK 3 T33: 0.2695 T12: 0.0067 REMARK 3 T13: -0.2483 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.4570 L22: 4.9724 REMARK 3 L33: 2.9126 L12: 0.0339 REMARK 3 L13: 0.8307 L23: 0.1344 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: 0.0757 S13: -0.0003 REMARK 3 S21: -0.3492 S22: -0.0153 S23: -0.3417 REMARK 3 S31: -0.0349 S32: 0.0040 S33: -0.0462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 21.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43900 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NOT DISCLOSED, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.02800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 7 REMARK 465 THR A 27 REMARK 465 TYR A 28 REMARK 465 LYS A 37 REMARK 465 VAL A 38 REMARK 465 ALA A 160 REMARK 465 GLN A 161 REMARK 465 ILE A 162 REMARK 465 GLY A 163 REMARK 465 ALA A 164 REMARK 465 THR A 165 REMARK 465 LEU A 166 REMARK 465 ALA A 167 REMARK 465 ARG A 168 REMARK 465 ARG A 169 REMARK 465 LEU A 170 REMARK 465 SER A 171 REMARK 465 PHE A 172 REMARK 465 ILE A 173 REMARK 465 GLY A 174 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 TYR B 28 REMARK 465 GLY B 163 REMARK 465 ALA B 164 REMARK 465 THR B 165 REMARK 465 LEU B 166 REMARK 465 ALA B 167 REMARK 465 ARG B 168 REMARK 465 ARG B 169 REMARK 465 LEU B 170 REMARK 465 SER B 171 REMARK 465 PHE B 172 REMARK 465 ILE B 173 REMARK 465 GLY B 174 REMARK 465 GLY B 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 75 109.38 -51.37 REMARK 500 LEU A 84 65.60 35.19 REMARK 500 GLU A 92 131.21 -36.00 REMARK 500 GLN A 104 -8.93 -56.49 REMARK 500 ARG A 136 -7.45 84.52 REMARK 500 ASP A 137 44.55 -154.60 REMARK 500 ILE A 158 94.34 -38.83 REMARK 500 TYR A 192 123.51 -23.57 REMARK 500 LEU A 211 2.90 91.61 REMARK 500 HIS A 219 132.33 -17.40 REMARK 500 LEU A 255 47.99 -84.00 REMARK 500 ASN B 10 67.62 -109.98 REMARK 500 VAL B 75 109.50 -58.18 REMARK 500 LEU B 84 68.59 32.49 REMARK 500 GLU B 92 131.91 -37.97 REMARK 500 GLN B 104 -7.36 -57.71 REMARK 500 ARG B 136 -9.49 83.72 REMARK 500 ASP B 137 51.23 -153.98 REMARK 500 ILE B 158 -51.04 -139.80 REMARK 500 TYR B 192 123.75 -25.17 REMARK 500 LEU B 211 4.16 89.29 REMARK 500 GLN B 212 142.54 -172.78 REMARK 500 HIS B 219 131.75 -25.54 REMARK 500 SER B 230 -87.83 -20.93 REMARK 500 LEU B 255 47.59 -83.86 REMARK 500 ASN B 293 77.70 -111.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 175 PRO B 176 133.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PAS A 7 295 UNP Q92918 M4K1_HUMAN 7 295 DBREF 8PAS B 7 295 UNP Q92918 M4K1_HUMAN 7 295 SEQRES 1 A 289 ASP ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU SEQRES 2 A 289 LEU GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE SEQRES 3 A 289 LYS ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU SEQRES 4 A 289 LYS MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR SEQRES 5 A 289 LEU GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS SEQRES 6 A 289 ALA ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU SEQRES 7 A 289 GLN LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SEQRES 8 A 289 SER LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER SEQRES 9 A 289 GLU LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN SEQRES 10 A 289 GLY LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG SEQRES 11 A 289 ASP ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY SEQRES 12 A 289 GLU VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE SEQRES 13 A 289 GLY ALA THR LEU ALA ARG ARG LEU SER PHE ILE GLY THR SEQRES 14 A 289 PRO TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU SEQRES 15 A 289 LYS GLY GLY TYR ASN GLU LEU CYS ASP ILE TRP SER LEU SEQRES 16 A 289 GLY ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO SEQRES 17 A 289 LEU PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET SEQRES 18 A 289 THR LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS SEQRES 19 A 289 GLY LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL SEQRES 20 A 289 THR LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR SEQRES 21 A 289 LYS MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU SEQRES 22 A 289 ASN ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS SEQRES 23 A 289 ASN PRO GLY SEQRES 1 B 289 ASP ILE PHE ASN ARG ASP PRO ARG ASP HIS TYR ASP LEU SEQRES 2 B 289 LEU GLN ARG LEU GLY GLY GLY THR TYR GLY GLU VAL PHE SEQRES 3 B 289 LYS ALA ARG ASP LYS VAL SER GLY ASP LEU VAL ALA LEU SEQRES 4 B 289 LYS MET VAL LYS MET GLU PRO ASP ASP ASP VAL SER THR SEQRES 5 B 289 LEU GLN LYS GLU ILE LEU ILE LEU LYS THR CYS ARG HIS SEQRES 6 B 289 ALA ASN ILE VAL ALA TYR HIS GLY SER TYR LEU TRP LEU SEQRES 7 B 289 GLN LYS LEU TRP ILE CYS MET GLU PHE CYS GLY ALA GLY SEQRES 8 B 289 SER LEU GLN ASP ILE TYR GLN VAL THR GLY SER LEU SER SEQRES 9 B 289 GLU LEU GLN ILE SER TYR VAL CYS ARG GLU VAL LEU GLN SEQRES 10 B 289 GLY LEU ALA TYR LEU HIS SER GLN LYS LYS ILE HIS ARG SEQRES 11 B 289 ASP ILE LYS GLY ALA ASN ILE LEU ILE ASN ASP ALA GLY SEQRES 12 B 289 GLU VAL ARG LEU ALA ASP PHE GLY ILE SER ALA GLN ILE SEQRES 13 B 289 GLY ALA THR LEU ALA ARG ARG LEU SER PHE ILE GLY THR SEQRES 14 B 289 PRO TYR TRP MET ALA PRO GLU VAL ALA ALA VAL ALA LEU SEQRES 15 B 289 LYS GLY GLY TYR ASN GLU LEU CYS ASP ILE TRP SER LEU SEQRES 16 B 289 GLY ILE THR ALA ILE GLU LEU ALA GLU LEU GLN PRO PRO SEQRES 17 B 289 LEU PHE ASP VAL HIS PRO LEU ARG VAL LEU PHE LEU MET SEQRES 18 B 289 THR LYS SER GLY TYR GLN PRO PRO ARG LEU LYS GLU LYS SEQRES 19 B 289 GLY LYS TRP SER ALA ALA PHE HIS ASN PHE ILE LYS VAL SEQRES 20 B 289 THR LEU THR LYS SER PRO LYS LYS ARG PRO SER ALA THR SEQRES 21 B 289 LYS MET LEU SER HIS GLN LEU VAL SER GLN PRO GLY LEU SEQRES 22 B 289 ASN ARG GLY LEU ILE LEU ASP LEU LEU ASP LYS LEU LYS SEQRES 23 B 289 ASN PRO GLY HET XOH A1001 41 HET XOH B1001 41 HETNAM XOH 4-[2,6-BIS(FLUORANYL)-4-(3-MORPHOLIN-4- HETNAM 2 XOH YLPROPYLCARBAMOYLAMINO)PHENOXY]-~{N}-[(4-METHYL-1,2,5- HETNAM 3 XOH OXADIAZOL-3-YL)METHYL]-1~{H}-PYRROLO[2,3-B]PYRIDINE-3- HETNAM 4 XOH CARBOXAMIDE FORMUL 3 XOH 2(C26 H28 F2 N8 O5) HELIX 1 AA1 ASP A 55 THR A 68 1 14 HELIX 2 AA2 SER A 98 GLY A 107 1 10 HELIX 3 AA3 SER A 110 GLN A 131 1 22 HELIX 4 AA4 LYS A 139 ALA A 141 5 3 HELIX 5 AA5 ALA A 180 GLY A 190 1 11 HELIX 6 AA6 LEU A 195 LEU A 211 1 17 HELIX 7 AA7 HIS A 219 LYS A 229 1 11 HELIX 8 AA8 SER A 244 LEU A 255 1 12 HELIX 9 AA9 SER A 264 LEU A 269 1 6 HELIX 10 AB1 HIS A 271 GLN A 276 1 6 HELIX 11 AB2 ARG A 281 ASN A 293 1 13 HELIX 12 AB3 ASP B 55 THR B 58 5 4 HELIX 13 AB4 LEU B 59 THR B 68 1 10 HELIX 14 AB5 SER B 98 GLY B 107 1 10 HELIX 15 AB6 SER B 110 GLN B 131 1 22 HELIX 16 AB7 LYS B 139 ALA B 141 5 3 HELIX 17 AB8 ALA B 180 GLY B 190 1 11 HELIX 18 AB9 LEU B 195 LEU B 211 1 17 HELIX 19 AC1 HIS B 219 LYS B 229 1 11 HELIX 20 AC2 SER B 244 LEU B 255 1 12 HELIX 21 AC3 SER B 264 LEU B 269 1 6 HELIX 22 AC4 HIS B 271 GLN B 276 1 6 HELIX 23 AC5 ARG B 281 ASN B 293 1 13 SHEET 1 AA1 6 PHE A 9 ASN A 10 0 SHEET 2 AA1 6 TYR A 77 LEU A 82 1 O SER A 80 N PHE A 9 SHEET 3 AA1 6 LYS A 86 GLU A 92 -1 O TRP A 88 N TYR A 81 SHEET 4 AA1 6 LEU A 42 LYS A 49 -1 N ALA A 44 O MET A 91 SHEET 5 AA1 6 VAL A 31 ARG A 35 -1 N ALA A 34 O VAL A 43 SHEET 6 AA1 6 ASP A 18 GLY A 24 -1 N GLN A 21 O LYS A 33 SHEET 1 AA2 2 ILE A 143 ILE A 145 0 SHEET 2 AA2 2 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA3 5 TYR B 17 GLY B 24 0 SHEET 2 AA3 5 GLU B 30 ASP B 36 -1 O LYS B 33 N GLN B 21 SHEET 3 AA3 5 ASP B 41 LYS B 49 -1 O MET B 47 N GLU B 30 SHEET 4 AA3 5 LYS B 86 GLU B 92 -1 O MET B 91 N ALA B 44 SHEET 5 AA3 5 TYR B 77 LEU B 82 -1 N TYR B 81 O TRP B 88 SHEET 1 AA4 2 ILE B 143 ILE B 145 0 SHEET 2 AA4 2 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 CRYST1 61.040 100.056 61.055 90.00 102.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016383 0.000000 0.003492 0.00000 SCALE2 0.000000 0.009994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016747 0.00000