HEADER RNA BINDING PROTEIN 13-JUN-23 8PE3 TITLE STRUCTURE OF CSM6' FROM STREPTOCOCCUS THERMOPHILUS IN COMPLEX WITH TITLE 2 CYCLIC HEXA-ADENYLATE (CA6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR SYSTEM ENDORIBONUCLEASE CSM6'; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CRISPR TYPE III-A ASSOCIATED PROTEIN CSM6-2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIC HEXAADENOSINE MONOPHOSPHATE (CA6); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA; COMPND 13 CHAIN: D, E; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1308; SOURCE 4 GENE: CSM6'; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CARF, HEPN, CA6, RNASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.MCQUARRIE,J.S.ATHUKORALAGE,S.A.MCMAHON,S.GRAHAM,K.ACKERMAN, AUTHOR 2 B.E.BODE,M.F.WHITE,T.M.GLOSTER REVDAT 5 08-NOV-23 8PE3 1 JRNL REVDAT 4 01-NOV-23 8PE3 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQADV SEQRES HET HETNAM REVDAT 4 3 1 FORMUL LINK ATOM REVDAT 3 25-OCT-23 8PE3 1 COMPND SEQRES REVDAT 2 11-OCT-23 8PE3 1 REMARK REVDAT 1 04-OCT-23 8PE3 0 JRNL AUTH S.MCQUARRIE,J.S.ATHUKORALAGE,S.A.MCMAHON,S.GRAHAM, JRNL AUTH 2 K.ACKERMANN,B.E.BODE,M.F.WHITE,T.M.GLOSTER JRNL TITL ACTIVATION OF CSM6 RIBONUCLEASE BY CYCLIC NUCLEOTIDE JRNL TITL 2 BINDING: IN AN EMERGENCY, TWIST TO OPEN. JRNL REF NUCLEIC ACIDS RES. V. 51 10590 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37747760 JRNL DOI 10.1093/NAR/GKAD739 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 54.8 REMARK 3 NUMBER OF REFLECTIONS : 57294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.3400 - 5.3900 0.99 5083 287 0.1689 0.2046 REMARK 3 2 5.3900 - 4.2900 1.00 4878 256 0.1419 0.1773 REMARK 3 3 4.2800 - 3.7500 1.00 4790 293 0.1464 0.1929 REMARK 3 4 3.7500 - 3.4100 1.00 4769 269 0.1736 0.2257 REMARK 3 5 3.4000 - 3.1600 1.00 4766 245 0.2065 0.2545 REMARK 3 6 3.1600 - 2.9800 1.00 4758 241 0.2412 0.3070 REMARK 3 7 2.9800 - 2.8300 1.00 4752 219 0.2632 0.2878 REMARK 3 8 2.8300 - 2.7000 0.93 4381 221 0.2783 0.2960 REMARK 3 9 2.7000 - 2.6000 0.77 3636 190 0.2827 0.3121 REMARK 3 10 2.6000 - 2.5100 0.56 2624 157 0.2982 0.3292 REMARK 3 11 2.5100 - 2.4300 0.43 1987 117 0.2924 0.3547 REMARK 3 12 2.4300 - 2.3600 0.36 1708 84 0.2913 0.3185 REMARK 3 13 2.3600 - 2.3000 0.31 1438 70 0.3098 0.3060 REMARK 3 14 2.3000 - 2.2400 0.25 1165 49 0.2987 0.3170 REMARK 3 15 2.2400 - 2.1900 0.21 968 59 0.3156 0.3738 REMARK 3 16 2.1900 - 2.1500 0.18 830 44 0.3197 0.2990 REMARK 3 17 2.1500 - 2.1000 0.14 663 28 0.3160 0.2405 REMARK 3 18 2.1000 - 2.0600 0.11 514 24 0.3524 0.3795 REMARK 3 19 2.0600 - 2.0300 0.08 396 19 0.3448 0.4300 REMARK 3 20 2.0300 - 1.9900 0.05 225 19 0.3071 0.5168 REMARK 3 21 1.9900 - 1.9600 0.01 69 3 0.3900 0.5564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6449 REMARK 3 ANGLE : 0.870 8782 REMARK 3 CHIRALITY : 0.051 1010 REMARK 3 PLANARITY : 0.008 1103 REMARK 3 DIHEDRAL : 10.952 1072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292126567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 94.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.85 M SODIUM MALONATE AND 5 % REMARK 280 ETHANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.26550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.95300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.95300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 214.89825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.95300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.95300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.63275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.95300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.95300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 214.89825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.95300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.95300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.63275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.26550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 295 REMARK 465 GLN A 296 REMARK 465 LYS A 297 REMARK 465 TYR A 298 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 ASN B -1 REMARK 465 ILE B 295 REMARK 465 GLN B 296 REMARK 465 LYS B 297 REMARK 465 TYR B 298 REMARK 465 LYS B 333 REMARK 465 VAL B 334 REMARK 465 ALA B 335 REMARK 465 HIS B 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 44 CE NZ REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 195 CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 LYS A 226 CE NZ REMARK 470 LYS A 231 CD CE NZ REMARK 470 ILE A 266 CG1 CG2 CD1 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 281 CD CE NZ REMARK 470 LYS A 282 CD CE NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ASP A 294 CG OD1 OD2 REMARK 470 TYR A 299 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 313 CE NZ REMARK 470 LYS A 333 CB CG CD CE NZ REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 GLN A 368 CG CD OE1 NE2 REMARK 470 LYS A 379 CE NZ REMARK 470 ASN A 386 CG OD1 ND2 REMARK 470 LYS B 96 CD CE NZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 ASN B 163 CG OD1 ND2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 195 CE NZ REMARK 470 GLN B 203 CG CD OE1 NE2 REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 LYS B 226 CE NZ REMARK 470 LYS B 231 CD CE NZ REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 263 CG CD OE1 OE2 REMARK 470 ILE B 266 CG1 CG2 CD1 REMARK 470 LYS B 269 CE NZ REMARK 470 LYS B 281 CD CE NZ REMARK 470 LYS B 282 CE NZ REMARK 470 GLU B 293 CD OE1 OE2 REMARK 470 ASP B 294 CB CG OD1 OD2 REMARK 470 TYR B 299 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 299 OH REMARK 470 LYS B 310 CD CE NZ REMARK 470 LYS B 316 CE NZ REMARK 470 ASP B 326 CG OD1 OD2 REMARK 470 SER B 329 CB OG REMARK 470 SER B 330 CB OG REMARK 470 SER B 339 CB OG REMARK 470 ASP B 344 CG OD1 OD2 REMARK 470 VAL B 346 CB CG1 CG2 REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LEU B 349 CG CD1 CD2 REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 ARG B 361 NE CZ NH1 NH2 REMARK 470 GLN B 368 CB CG CD OE1 NE2 REMARK 470 LYS B 379 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 58 CA - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 A C 3 C3' - O3' - P ANGL. DEV. = -7.6 DEGREES REMARK 500 A C 4 C3' - O3' - P ANGL. DEV. = -10.1 DEGREES REMARK 500 ADN E 1 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 -165.12 92.57 REMARK 500 ALA A 137 -179.11 -172.07 REMARK 500 ASN A 163 58.55 -98.18 REMARK 500 CYS A 292 20.25 -79.67 REMARK 500 MET A 327 28.83 -75.67 REMARK 500 ALA B 107 -162.88 94.92 REMARK 500 ALA B 137 -178.43 -175.42 REMARK 500 ASN B 160 71.19 -65.41 REMARK 500 ASN B 163 73.59 -100.14 REMARK 500 MET B 327 8.02 -62.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 535 DISTANCE = 6.59 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PCW RELATED DB: PDB DBREF1 8PE3 A 3 386 UNP CSM6B_STRTR DBREF2 8PE3 A A0A0A7HFE6 3 386 DBREF1 8PE3 B 3 386 UNP CSM6B_STRTR DBREF2 8PE3 B A0A0A7HFE6 3 386 DBREF 8PE3 C 1 6 PDB 8PE3 8PE3 1 6 DBREF 8PE3 D 1 3 PDB 8PE3 8PE3 1 3 DBREF 8PE3 E 1 3 PDB 8PE3 8PE3 1 3 SEQADV 8PE3 GLY A -3 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ALA A -2 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ASN A -1 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ALA A 0 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 MET A 1 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 GLY A 2 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ALA A 21 UNP A0A0A7HFE SER 21 VARIANT SEQADV 8PE3 LYS A 281 UNP A0A0A7HFE GLU 281 VARIANT SEQADV 8PE3 GLN A 375 UNP A0A0A7HFE HIS 375 VARIANT SEQADV 8PE3 GLY B -3 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ALA B -2 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ASN B -1 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ALA B 0 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 MET B 1 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 GLY B 2 UNP A0A0A7HFE EXPRESSION TAG SEQADV 8PE3 ALA B 21 UNP A0A0A7HFE SER 21 VARIANT SEQADV 8PE3 LYS B 281 UNP A0A0A7HFE GLU 281 VARIANT SEQADV 8PE3 GLN B 375 UNP A0A0A7HFE HIS 375 VARIANT SEQRES 1 A 390 GLY ALA ASN ALA MET GLY VAL LEU ILE SER ALA VAL GLY SEQRES 2 A 390 ASP THR ASP PRO PHE ARG ASN PHE HIS ASP GLY ALA LEU SEQRES 3 A 390 ILE HIS ILE ALA ARG LYS TYR ARG PRO GLU LYS VAL ILE SEQRES 4 A 390 LEU ILE PHE SER GLU HIS THR ALA LYS LYS GLN GLY ASN SEQRES 5 A 390 ILE GLU LYS ALA LEU PHE SER ILE ALA PRO ASN TYR GLU SEQRES 6 A 390 PRO GLU LEU ILE ILE HIS ASP PRO ILE ILE SER ASP ASN SEQRES 7 A 390 GLU VAL HIS ILE PHE ASP VAL MET PHE GLN ARG PHE SER SEQRES 8 A 390 ASP ILE LEU GLN GLU TYR TYR THR LYS GLU ASP GLU PHE SEQRES 9 A 390 ILE LEU ASN LEU SER SER ALA THR PRO GLN ILE LYS SER SEQRES 10 A 390 ALA LEU PHE VAL ILE ASN ARG LEU ASN GLY ILE ASN VAL SEQRES 11 A 390 LYS ALA VAL GLN VAL SER SER PRO GLU HIS ALA SER ASN SEQRES 12 A 390 GLU ASN ILE GLY HIS ASP ASN ASP GLU ASN ILE ASP GLU SEQRES 13 A 390 LEU ILE GLU VAL ASN LYS ASP ASN LYS VAL ASN PHE ILE SEQRES 14 A 390 ASP ARG THR ILE GLU ASP ASN ALA GLU LYS PHE SER GLN SEQRES 15 A 390 ALA LEU LEU LYS LYS THR ALA ARG ASP PHE ILE GLU LYS SEQRES 16 A 390 PHE ASP TYR LYS ALA ALA LEU ASP ILE LEU ASP GLN LEU SEQRES 17 A 390 SER ASP PHE PRO ASN LEU LYS SER VAL ARG GLU GLU ILE SEQRES 18 A 390 ARG ASP VAL VAL ASN CYS LEU SER LYS GLN ASP VAL PRO SEQRES 19 A 390 LYS GLY LEU ARG HIS LYS LYS LEU LYS GLU GLU GLU GLN SEQRES 20 A 390 LYS ILE LEU SER ALA TYR LEU THR ILE GLU LEU GLN ARG SEQRES 21 A 390 GLU ARG GLY ASN VAL SER GLU SER PHE ILE ARG ILE LYS SEQRES 22 A 390 ASN LEU THR GLU PHE ILE LEU GLU ASP TYR ILE LYS LYS SEQRES 23 A 390 ARG TYR PRO GLY LEU ILE ASP GLU TYR CYS GLU ASP ILE SEQRES 24 A 390 GLN LYS TYR TYR LEU SER LEU PHE ASP TYR SER LYS LEU SEQRES 25 A 390 LEU LYS ALA THR LYS GLU PHE LYS LEU LYS ARG THR ILE SEQRES 26 A 390 ALA PRO ILE ILE ASP MET ASN SER SER ARG ASN LYS VAL SEQRES 27 A 390 ALA HIS SER LEU SER PRO LEU ASP SER ASP ALA VAL LYS SEQRES 28 A 390 GLN LEU GLY ILE ALA MET LYS THR LEU LYS THR LEU VAL SEQRES 29 A 390 ARG GLU GLN TYR HIS PHE SER GLN SER ASP PHE ASN PHE SEQRES 30 A 390 TYR GLN ASP LEU ASN LYS ILE LEU LEU THR LYS LEU ASN SEQRES 1 B 390 GLY ALA ASN ALA MET GLY VAL LEU ILE SER ALA VAL GLY SEQRES 2 B 390 ASP THR ASP PRO PHE ARG ASN PHE HIS ASP GLY ALA LEU SEQRES 3 B 390 ILE HIS ILE ALA ARG LYS TYR ARG PRO GLU LYS VAL ILE SEQRES 4 B 390 LEU ILE PHE SER GLU HIS THR ALA LYS LYS GLN GLY ASN SEQRES 5 B 390 ILE GLU LYS ALA LEU PHE SER ILE ALA PRO ASN TYR GLU SEQRES 6 B 390 PRO GLU LEU ILE ILE HIS ASP PRO ILE ILE SER ASP ASN SEQRES 7 B 390 GLU VAL HIS ILE PHE ASP VAL MET PHE GLN ARG PHE SER SEQRES 8 B 390 ASP ILE LEU GLN GLU TYR TYR THR LYS GLU ASP GLU PHE SEQRES 9 B 390 ILE LEU ASN LEU SER SER ALA THR PRO GLN ILE LYS SER SEQRES 10 B 390 ALA LEU PHE VAL ILE ASN ARG LEU ASN GLY ILE ASN VAL SEQRES 11 B 390 LYS ALA VAL GLN VAL SER SER PRO GLU HIS ALA SER ASN SEQRES 12 B 390 GLU ASN ILE GLY HIS ASP ASN ASP GLU ASN ILE ASP GLU SEQRES 13 B 390 LEU ILE GLU VAL ASN LYS ASP ASN LYS VAL ASN PHE ILE SEQRES 14 B 390 ASP ARG THR ILE GLU ASP ASN ALA GLU LYS PHE SER GLN SEQRES 15 B 390 ALA LEU LEU LYS LYS THR ALA ARG ASP PHE ILE GLU LYS SEQRES 16 B 390 PHE ASP TYR LYS ALA ALA LEU ASP ILE LEU ASP GLN LEU SEQRES 17 B 390 SER ASP PHE PRO ASN LEU LYS SER VAL ARG GLU GLU ILE SEQRES 18 B 390 ARG ASP VAL VAL ASN CYS LEU SER LYS GLN ASP VAL PRO SEQRES 19 B 390 LYS GLY LEU ARG HIS LYS LYS LEU LYS GLU GLU GLU GLN SEQRES 20 B 390 LYS ILE LEU SER ALA TYR LEU THR ILE GLU LEU GLN ARG SEQRES 21 B 390 GLU ARG GLY ASN VAL SER GLU SER PHE ILE ARG ILE LYS SEQRES 22 B 390 ASN LEU THR GLU PHE ILE LEU GLU ASP TYR ILE LYS LYS SEQRES 23 B 390 ARG TYR PRO GLY LEU ILE ASP GLU TYR CYS GLU ASP ILE SEQRES 24 B 390 GLN LYS TYR TYR LEU SER LEU PHE ASP TYR SER LYS LEU SEQRES 25 B 390 LEU LYS ALA THR LYS GLU PHE LYS LEU LYS ARG THR ILE SEQRES 26 B 390 ALA PRO ILE ILE ASP MET ASN SER SER ARG ASN LYS VAL SEQRES 27 B 390 ALA HIS SER LEU SER PRO LEU ASP SER ASP ALA VAL LYS SEQRES 28 B 390 GLN LEU GLY ILE ALA MET LYS THR LEU LYS THR LEU VAL SEQRES 29 B 390 ARG GLU GLN TYR HIS PHE SER GLN SER ASP PHE ASN PHE SEQRES 30 B 390 TYR GLN ASP LEU ASN LYS ILE LEU LEU THR LYS LEU ASN SEQRES 1 C 6 A A A A A A SEQRES 1 D 3 ADN A A23 SEQRES 1 E 3 ADN A A23 HET ADN D 1 19 HET A23 D 3 25 HET ADN E 1 19 HET A23 E 3 25 HETNAM ADN ADENOSINE HETNAM A23 ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE FORMUL 4 ADN 2(C10 H13 N5 O4) FORMUL 4 A23 2(C10 H13 N5 O9 P2) FORMUL 6 HOH *293(H2 O) HELIX 1 AA1 GLY A 20 ARG A 30 1 11 HELIX 2 AA2 SER A 39 LYS A 44 1 6 HELIX 3 AA3 LYS A 45 SER A 55 1 11 HELIX 4 AA4 ILE A 78 TYR A 94 1 17 HELIX 5 AA5 THR A 108 ASN A 122 1 15 HELIX 6 AA6 ASN A 149 ASN A 157 1 9 HELIX 7 AA7 ALA A 173 LYS A 191 1 19 HELIX 8 AA8 ASP A 193 GLN A 203 1 11 HELIX 9 AA9 ASN A 209 LYS A 226 1 18 HELIX 10 AB1 PRO A 230 ARG A 234 5 5 HELIX 11 AB2 LYS A 239 ARG A 258 1 20 HELIX 12 AB3 ASN A 260 TYR A 284 1 25 HELIX 13 AB4 GLY A 286 CYS A 292 1 7 HELIX 14 AB5 SER A 301 THR A 312 1 12 HELIX 15 AB6 GLU A 314 ILE A 321 1 8 HELIX 16 AB7 ILE A 321 MET A 327 1 7 HELIX 17 AB8 MET A 327 SER A 337 1 11 HELIX 18 AB9 ASP A 342 HIS A 365 1 24 HELIX 19 AC1 SER A 367 ASN A 372 1 6 HELIX 20 AC2 ASN A 372 LYS A 384 1 13 HELIX 21 AC3 GLY B 20 ARG B 30 1 11 HELIX 22 AC4 SER B 39 LYS B 44 1 6 HELIX 23 AC5 LYS B 45 SER B 55 1 11 HELIX 24 AC6 ILE B 78 TYR B 94 1 17 HELIX 25 AC7 THR B 108 ASN B 122 1 15 HELIX 26 AC8 ASN B 149 ASN B 157 1 9 HELIX 27 AC9 ALA B 173 LYS B 191 1 19 HELIX 28 AD1 ASP B 193 ASP B 202 1 10 HELIX 29 AD2 ASN B 209 LYS B 226 1 18 HELIX 30 AD3 PRO B 230 ARG B 234 5 5 HELIX 31 AD4 LYS B 239 ARG B 258 1 20 HELIX 32 AD5 ASN B 260 TYR B 284 1 25 HELIX 33 AD6 GLY B 286 CYS B 292 1 7 HELIX 34 AD7 SER B 301 THR B 312 1 12 HELIX 35 AD8 GLU B 314 ILE B 321 1 8 HELIX 36 AD9 ILE B 321 MET B 327 1 7 HELIX 37 AE1 MET B 327 ASN B 332 1 6 HELIX 38 AE2 ASP B 342 HIS B 365 1 24 HELIX 39 AE3 SER B 369 PHE B 371 5 3 HELIX 40 AE4 ASN B 372 LEU B 385 1 14 SHEET 1 AA1 6 GLU A 63 ILE A 66 0 SHEET 2 AA1 6 LYS A 33 ILE A 37 1 N LEU A 36 O ILE A 65 SHEET 3 AA1 6 GLY A 2 ALA A 7 1 N SER A 6 O ILE A 37 SHEET 4 AA1 6 GLU A 99 ASN A 103 1 O ILE A 101 N ILE A 5 SHEET 5 AA1 6 LYS A 127 VAL A 131 1 O LYS A 127 N LEU A 102 SHEET 6 AA1 6 THR A 168 ASP A 171 -1 O ILE A 169 N GLN A 130 SHEET 1 AA2 2 PHE A 14 ARG A 15 0 SHEET 2 AA2 2 HIS A 18 ASP A 19 -1 O HIS A 18 N ARG A 15 SHEET 1 AA3 6 GLU B 63 ILE B 66 0 SHEET 2 AA3 6 LYS B 33 ILE B 37 1 N LEU B 36 O ILE B 65 SHEET 3 AA3 6 GLY B 2 ALA B 7 1 N LEU B 4 O ILE B 35 SHEET 4 AA3 6 GLU B 99 ASN B 103 1 O ILE B 101 N ILE B 5 SHEET 5 AA3 6 LYS B 127 VAL B 131 1 O VAL B 129 N LEU B 102 SHEET 6 AA3 6 THR B 168 ASP B 171 -1 O ILE B 169 N GLN B 130 SHEET 1 AA4 2 PHE B 14 ARG B 15 0 SHEET 2 AA4 2 HIS B 18 ASP B 19 -1 O HIS B 18 N ARG B 15 LINK O3'BADN D 1 P B A D 2 1555 1555 1.61 LINK O3'B A D 2 P BA23 D 3 1555 1555 1.61 LINK O3'BADN E 1 P B A E 2 1555 1555 1.61 LINK O3'B A E 2 P BA23 E 3 1555 1555 1.61 CISPEP 1 ASP A 12 PRO A 13 0 1.46 CISPEP 2 ASP A 68 PRO A 69 0 1.67 CISPEP 3 ASP B 12 PRO B 13 0 3.17 CISPEP 4 ASP B 68 PRO B 69 0 3.19 CRYST1 99.906 99.906 286.531 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003490 0.00000