HEADER PLANT PROTEIN 14-JUN-23 8PEH TITLE CRYSTAL STRUCTURE OF LOTUS JAPONICUS SYMRK KINASE DOMAIN D738N COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-LIKE KINASE SYMRK; COMPND 3 CHAIN: B, C, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOTUS JAPONICUS; SOURCE 3 ORGANISM_TAXID: 34305; SOURCE 4 STRAIN: GIFU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE, SYMBIOSIS, PLANT, PHOSPHORYLATION, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.M.NOERGAARD,K.GYSEL,S.B.HANSEN,K.R.ANDERSEN REVDAT 3 13-NOV-24 8PEH 1 REMARK REVDAT 2 06-MAR-24 8PEH 1 JRNL REVDAT 1 28-FEB-24 8PEH 0 JRNL AUTH N.B.ABEL,M.M.M.NORGAARD,S.B.HANSEN,K.GYSEL,I.A.DIEZ, JRNL AUTH 2 O.N.JENSEN,J.STOUGAARD,K.R.ANDERSEN JRNL TITL PHOSPHORYLATION OF THE ALPHA-I MOTIF IN SYMRK DRIVES ROOT JRNL TITL 2 NODULE ORGANOGENESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 22121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38363863 JRNL DOI 10.1073/PNAS.2311522121 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 80244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 3738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5900 - 5.8500 0.98 2981 140 0.1935 0.2120 REMARK 3 2 5.8400 - 4.6400 0.98 2895 142 0.1731 0.2117 REMARK 3 3 4.6400 - 4.0600 0.99 2896 132 0.1484 0.2394 REMARK 3 4 4.0600 - 3.6800 0.99 2887 162 0.1625 0.1617 REMARK 3 5 3.6800 - 3.4200 0.99 2861 125 0.1718 0.1963 REMARK 3 6 3.4200 - 3.2200 0.99 2887 144 0.1906 0.2343 REMARK 3 7 3.2200 - 3.0600 0.98 2855 142 0.1929 0.2256 REMARK 3 8 3.0600 - 2.9200 0.98 2885 130 0.2016 0.2671 REMARK 3 9 2.9200 - 2.8100 0.98 2842 155 0.1888 0.2068 REMARK 3 10 2.8100 - 2.7200 0.98 2850 120 0.1947 0.2364 REMARK 3 11 2.7200 - 2.6300 0.98 2857 156 0.1992 0.2308 REMARK 3 12 2.6300 - 2.5600 0.98 2844 120 0.1999 0.2509 REMARK 3 13 2.5600 - 2.4900 0.98 2830 150 0.1910 0.2270 REMARK 3 14 2.4900 - 2.4300 0.98 2826 139 0.2114 0.2590 REMARK 3 15 2.4300 - 2.3700 0.97 2805 137 0.2202 0.3123 REMARK 3 16 2.3700 - 2.3200 0.97 2848 151 0.2269 0.2687 REMARK 3 17 2.3200 - 2.2800 0.98 2789 149 0.2291 0.2491 REMARK 3 18 2.2800 - 2.2300 0.96 2821 108 0.2345 0.2529 REMARK 3 19 2.2300 - 2.1900 0.96 2800 127 0.2369 0.2761 REMARK 3 20 2.1900 - 2.1600 0.96 2746 171 0.2429 0.2738 REMARK 3 21 2.1600 - 2.1200 0.97 2826 112 0.2471 0.2905 REMARK 3 22 2.1200 - 2.0900 0.97 2796 146 0.2528 0.2969 REMARK 3 23 2.0900 - 2.0600 0.96 2753 129 0.2666 0.3206 REMARK 3 24 2.0600 - 2.0300 0.96 2815 155 0.2763 0.2991 REMARK 3 25 2.0300 - 2.0000 0.96 2762 145 0.3088 0.3387 REMARK 3 26 2.0000 - 1.9700 0.96 2776 141 0.3567 0.3789 REMARK 3 27 1.9700 - 1.9500 0.95 2773 110 0.3875 0.4284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.269 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7088 REMARK 3 ANGLE : 0.779 9600 REMARK 3 CHIRALITY : 0.051 1052 REMARK 3 PLANARITY : 0.007 1228 REMARK 3 DIHEDRAL : 12.448 2605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 580 THROUGH 680 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2002 -43.8351 14.7986 REMARK 3 T TENSOR REMARK 3 T11: 0.5043 T22: 0.3604 REMARK 3 T33: 0.4021 T12: 0.0353 REMARK 3 T13: 0.0859 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 6.9334 L22: 1.5229 REMARK 3 L33: 3.6026 L12: -0.1897 REMARK 3 L13: -2.4525 L23: 1.2185 REMARK 3 S TENSOR REMARK 3 S11: -0.2746 S12: 0.6887 S13: -0.2677 REMARK 3 S21: -0.5318 S22: 0.2912 S23: -0.2253 REMARK 3 S31: 0.3972 S32: 0.3645 S33: -0.0293 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 681 THROUGH 877 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8972 -31.8510 27.3904 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.1595 REMARK 3 T33: 0.1835 T12: -0.0019 REMARK 3 T13: 0.0221 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.9459 L22: 2.1589 REMARK 3 L33: 3.3974 L12: -0.2872 REMARK 3 L13: 0.6482 L23: -0.3018 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.0149 S13: -0.0373 REMARK 3 S21: 0.0133 S22: 0.0324 S23: -0.0358 REMARK 3 S31: 0.1016 S32: -0.0531 S33: 0.0393 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 580 THROUGH 741 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.9855 -36.7839 -14.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.3538 T22: 0.3281 REMARK 3 T33: 0.3062 T12: -0.0458 REMARK 3 T13: 0.0294 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.0754 L22: 3.1901 REMARK 3 L33: 4.4789 L12: 2.4202 REMARK 3 L13: 2.9515 L23: 3.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: -0.1384 S13: 0.1036 REMARK 3 S21: -0.0702 S22: -0.1837 S23: 0.3269 REMARK 3 S31: 0.1243 S32: -0.4752 S33: 0.2194 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 742 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6481 -28.0802 -6.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.2809 REMARK 3 T33: 0.2385 T12: 0.0021 REMARK 3 T13: 0.0002 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.6360 L22: 2.1027 REMARK 3 L33: 5.3040 L12: 0.6644 REMARK 3 L13: -0.5609 L23: -1.7281 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: 0.0299 S13: -0.0667 REMARK 3 S21: -0.1798 S22: -0.0382 S23: -0.2351 REMARK 3 S31: 0.0669 S32: 0.4739 S33: 0.0788 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 578 THROUGH 624 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.0308 -39.2640 55.2387 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.3290 REMARK 3 T33: 0.3395 T12: 0.0162 REMARK 3 T13: 0.0375 T23: -0.0860 REMARK 3 L TENSOR REMARK 3 L11: 5.6175 L22: 8.6260 REMARK 3 L33: 6.5583 L12: 0.7186 REMARK 3 L13: 0.5459 L23: 2.4743 REMARK 3 S TENSOR REMARK 3 S11: 0.1267 S12: -0.3191 S13: 0.2926 REMARK 3 S21: 0.3751 S22: -0.2558 S23: 0.8022 REMARK 3 S31: -0.1294 S32: -0.7261 S33: 0.0948 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 625 THROUGH 709 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.6459 -49.4818 46.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.2453 REMARK 3 T33: 0.2782 T12: 0.0529 REMARK 3 T13: -0.0056 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.0325 L22: 4.8432 REMARK 3 L33: 3.9766 L12: 1.5099 REMARK 3 L13: 0.4477 L23: 2.5973 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: -0.1279 S13: 0.2275 REMARK 3 S21: 0.0407 S22: -0.1240 S23: 0.1831 REMARK 3 S31: -0.2862 S32: -0.2678 S33: -0.0200 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 710 THROUGH 741 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.7743 -52.6100 43.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.2898 REMARK 3 T33: 0.3308 T12: 0.0154 REMARK 3 T13: 0.0107 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 5.0695 L22: 5.7357 REMARK 3 L33: 5.8728 L12: 0.5256 REMARK 3 L13: -3.4705 L23: -1.1928 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.4657 S13: 0.2263 REMARK 3 S21: 0.1548 S22: -0.0461 S23: -0.5329 REMARK 3 S31: -0.3753 S32: 0.1562 S33: -0.0031 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 758 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.3099 -69.5856 39.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.1875 REMARK 3 T33: 0.1884 T12: -0.0124 REMARK 3 T13: 0.0008 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.4667 L22: 2.7074 REMARK 3 L33: 4.0372 L12: 0.1518 REMARK 3 L13: -0.9950 L23: -1.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.1642 S13: -0.0538 REMARK 3 S21: -0.1811 S22: -0.0146 S23: -0.0457 REMARK 3 S31: 0.2799 S32: -0.3331 S33: 0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 41.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12280 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5 1.26 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.43500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.43500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 578 REMARK 465 VAL B 579 REMARK 465 PRO B 746 REMARK 465 GLN B 747 REMARK 465 GLU B 748 REMARK 465 GLY B 749 REMARK 465 ASP B 750 REMARK 465 SER B 751 REMARK 465 TYR B 752 REMARK 465 VAL B 753 REMARK 465 SER C 578 REMARK 465 VAL C 579 REMARK 465 PRO C 746 REMARK 465 GLN C 747 REMARK 465 GLU C 748 REMARK 465 GLY C 749 REMARK 465 ASP C 750 REMARK 465 SER C 751 REMARK 465 TYR C 752 REMARK 465 VAL C 753 REMARK 465 SER C 754 REMARK 465 ALA C 876 REMARK 465 SER C 877 REMARK 465 SER A 742 REMARK 465 LYS A 743 REMARK 465 TYR A 744 REMARK 465 ALA A 745 REMARK 465 PRO A 746 REMARK 465 GLN A 747 REMARK 465 GLU A 748 REMARK 465 GLY A 749 REMARK 465 ASP A 750 REMARK 465 SER A 751 REMARK 465 TYR A 752 REMARK 465 VAL A 753 REMARK 465 SER A 754 REMARK 465 LEU A 755 REMARK 465 GLU A 756 REMARK 465 VAL A 757 REMARK 465 ALA A 876 REMARK 465 SER A 877 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 1090 O HOH C 1143 2.18 REMARK 500 NH1 ARG B 801 O HOH B 1001 2.18 REMARK 500 OH TYR B 833 O HOH B 1002 2.18 REMARK 500 O HOH C 1118 O HOH C 1129 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1039 O HOH A 1061 4456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 630 -85.08 -124.15 REMARK 500 TYR B 680 20.96 -148.79 REMARK 500 ARG B 719 -6.35 79.60 REMARK 500 ASP B 720 55.02 -144.52 REMARK 500 ASN B 738 76.72 73.71 REMARK 500 ALA B 876 33.54 -81.23 REMARK 500 ILE C 600 -60.88 -94.49 REMARK 500 GLN C 630 76.21 -116.02 REMARK 500 TYR C 680 15.65 -147.01 REMARK 500 ARG C 719 -5.48 76.77 REMARK 500 ASP C 720 56.89 -145.17 REMARK 500 ASN C 738 80.82 70.45 REMARK 500 GLU C 756 -134.71 -117.72 REMARK 500 GLU C 756 -134.71 -117.42 REMARK 500 TYR A 680 20.11 -155.01 REMARK 500 ARG A 719 -20.15 85.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1170 DISTANCE = 6.08 ANGSTROMS DBREF 8PEH B 578 877 UNP Q8LKX1 Q8LKX1_LOTJA 578 877 DBREF 8PEH C 578 877 UNP Q8LKX1 Q8LKX1_LOTJA 578 877 DBREF 8PEH A 578 877 UNP Q8LKX1 Q8LKX1_LOTJA 578 877 SEQADV 8PEH ASN B 738 UNP Q8LKX1 ASP 738 ENGINEERED MUTATION SEQADV 8PEH ASN C 738 UNP Q8LKX1 ASP 738 ENGINEERED MUTATION SEQADV 8PEH ASN A 738 UNP Q8LKX1 ASP 738 ENGINEERED MUTATION SEQRES 1 B 300 SER VAL SER ILE GLN ALA PHE THR LEU GLU TYR ILE GLU SEQRES 2 B 300 VAL ALA THR GLU ARG TYR LYS THR LEU ILE GLY GLU GLY SEQRES 3 B 300 GLY PHE GLY SER VAL TYR ARG GLY THR LEU ASN ASP GLY SEQRES 4 B 300 GLN GLU VAL ALA VAL LYS VAL ARG SER ALA THR SER THR SEQRES 5 B 300 GLN GLY THR ARG GLU PHE ASP ASN GLU LEU ASN LEU LEU SEQRES 6 B 300 SER ALA ILE GLN HIS GLU ASN LEU VAL PRO LEU LEU GLY SEQRES 7 B 300 TYR CYS ASN GLU SER ASP GLN GLN ILE LEU VAL TYR PRO SEQRES 8 B 300 PHE MET SER ASN GLY SER LEU GLN ASP ARG LEU TYR GLY SEQRES 9 B 300 GLU PRO ALA LYS ARG LYS ILE LEU ASP TRP PRO THR ARG SEQRES 10 B 300 LEU SER ILE ALA LEU GLY ALA ALA ARG GLY LEU ALA TYR SEQRES 11 B 300 LEU HIS THR PHE PRO GLY ARG SER VAL ILE HIS ARG ASP SEQRES 12 B 300 ILE LYS SER SER ASN ILE LEU LEU ASP HIS SER MET CME SEQRES 13 B 300 ALA LYS VAL ALA ASN PHE GLY PHE SER LYS TYR ALA PRO SEQRES 14 B 300 GLN GLU GLY ASP SER TYR VAL SER LEU GLU VAL ARG GLY SEQRES 15 B 300 THR ALA GLY TYR LEU ASP PRO GLU TYR TYR LYS THR GLN SEQRES 16 B 300 GLN LEU SER GLU LYS SER ASP VAL PHE SER PHE GLY VAL SEQRES 17 B 300 VAL LEU LEU GLU ILE VAL SER GLY ARG GLU PRO LEU ASN SEQRES 18 B 300 ILE LYS ARG PRO ARG THR GLU TRP SER LEU VAL GLU TRP SEQRES 19 B 300 ALA THR PRO TYR ILE ARG GLY SER LYS VAL ASP GLU ILE SEQRES 20 B 300 VAL ASP PRO GLY ILE LYS GLY GLY TYR HIS ALA GLU ALA SEQRES 21 B 300 MET TRP ARG VAL VAL GLU VAL ALA LEU GLN CYS LEU GLU SEQRES 22 B 300 PRO PHE SER THR TYR ARG PRO SER MET VAL ALA ILE VAL SEQRES 23 B 300 ARG GLU LEU GLU ASP ALA LEU ILE ILE GLU ASN ASN ALA SEQRES 24 B 300 SER SEQRES 1 C 300 SER VAL SER ILE GLN ALA PHE THR LEU GLU TYR ILE GLU SEQRES 2 C 300 VAL ALA THR GLU ARG TYR LYS THR LEU ILE GLY GLU GLY SEQRES 3 C 300 GLY PHE GLY SER VAL TYR ARG GLY THR LEU ASN ASP GLY SEQRES 4 C 300 GLN GLU VAL ALA VAL LYS VAL ARG SER ALA THR SER THR SEQRES 5 C 300 GLN GLY THR ARG GLU PHE ASP ASN GLU LEU ASN LEU LEU SEQRES 6 C 300 SER ALA ILE GLN HIS GLU ASN LEU VAL PRO LEU LEU GLY SEQRES 7 C 300 TYR CYS ASN GLU SER ASP GLN GLN ILE LEU VAL TYR PRO SEQRES 8 C 300 PHE MET SER ASN GLY SER LEU GLN ASP ARG LEU TYR GLY SEQRES 9 C 300 GLU PRO ALA LYS ARG LYS ILE LEU ASP TRP PRO THR ARG SEQRES 10 C 300 LEU SER ILE ALA LEU GLY ALA ALA ARG GLY LEU ALA TYR SEQRES 11 C 300 LEU HIS THR PHE PRO GLY ARG SER VAL ILE HIS ARG ASP SEQRES 12 C 300 ILE LYS SER SER ASN ILE LEU LEU ASP HIS SER MET CME SEQRES 13 C 300 ALA LYS VAL ALA ASN PHE GLY PHE SER LYS TYR ALA PRO SEQRES 14 C 300 GLN GLU GLY ASP SER TYR VAL SER LEU GLU VAL ARG GLY SEQRES 15 C 300 THR ALA GLY TYR LEU ASP PRO GLU TYR TYR LYS THR GLN SEQRES 16 C 300 GLN LEU SER GLU LYS SER ASP VAL PHE SER PHE GLY VAL SEQRES 17 C 300 VAL LEU LEU GLU ILE VAL SER GLY ARG GLU PRO LEU ASN SEQRES 18 C 300 ILE LYS ARG PRO ARG THR GLU TRP SER LEU VAL GLU TRP SEQRES 19 C 300 ALA THR PRO TYR ILE ARG GLY SER LYS VAL ASP GLU ILE SEQRES 20 C 300 VAL ASP PRO GLY ILE LYS GLY GLY TYR HIS ALA GLU ALA SEQRES 21 C 300 MET TRP ARG VAL VAL GLU VAL ALA LEU GLN CYS LEU GLU SEQRES 22 C 300 PRO PHE SER THR TYR ARG PRO SER MET VAL ALA ILE VAL SEQRES 23 C 300 ARG GLU LEU GLU ASP ALA LEU ILE ILE GLU ASN ASN ALA SEQRES 24 C 300 SER SEQRES 1 A 300 SER VAL SER ILE GLN ALA PHE THR LEU GLU TYR ILE GLU SEQRES 2 A 300 VAL ALA THR GLU ARG TYR LYS THR LEU ILE GLY GLU GLY SEQRES 3 A 300 GLY PHE GLY SER VAL TYR ARG GLY THR LEU ASN ASP GLY SEQRES 4 A 300 GLN GLU VAL ALA VAL LYS VAL ARG SER ALA THR SER THR SEQRES 5 A 300 GLN GLY THR ARG GLU PHE ASP ASN GLU LEU ASN LEU LEU SEQRES 6 A 300 SER ALA ILE GLN HIS GLU ASN LEU VAL PRO LEU LEU GLY SEQRES 7 A 300 TYR CYS ASN GLU SER ASP GLN GLN ILE LEU VAL TYR PRO SEQRES 8 A 300 PHE MET SER ASN GLY SER LEU GLN ASP ARG LEU TYR GLY SEQRES 9 A 300 GLU PRO ALA LYS ARG LYS ILE LEU ASP TRP PRO THR ARG SEQRES 10 A 300 LEU SER ILE ALA LEU GLY ALA ALA ARG GLY LEU ALA TYR SEQRES 11 A 300 LEU HIS THR PHE PRO GLY ARG SER VAL ILE HIS ARG ASP SEQRES 12 A 300 ILE LYS SER SER ASN ILE LEU LEU ASP HIS SER MET CME SEQRES 13 A 300 ALA LYS VAL ALA ASN PHE GLY PHE SER LYS TYR ALA PRO SEQRES 14 A 300 GLN GLU GLY ASP SER TYR VAL SER LEU GLU VAL ARG GLY SEQRES 15 A 300 THR ALA GLY TYR LEU ASP PRO GLU TYR TYR LYS THR GLN SEQRES 16 A 300 GLN LEU SER GLU LYS SER ASP VAL PHE SER PHE GLY VAL SEQRES 17 A 300 VAL LEU LEU GLU ILE VAL SER GLY ARG GLU PRO LEU ASN SEQRES 18 A 300 ILE LYS ARG PRO ARG THR GLU TRP SER LEU VAL GLU TRP SEQRES 19 A 300 ALA THR PRO TYR ILE ARG GLY SER LYS VAL ASP GLU ILE SEQRES 20 A 300 VAL ASP PRO GLY ILE LYS GLY GLY TYR HIS ALA GLU ALA SEQRES 21 A 300 MET TRP ARG VAL VAL GLU VAL ALA LEU GLN CYS LEU GLU SEQRES 22 A 300 PRO PHE SER THR TYR ARG PRO SER MET VAL ALA ILE VAL SEQRES 23 A 300 ARG GLU LEU GLU ASP ALA LEU ILE ILE GLU ASN ASN ALA SEQRES 24 A 300 SER MODRES 8PEH CME B 733 CYS MODIFIED RESIDUE MODRES 8PEH CME C 733 CYS MODIFIED RESIDUE MODRES 8PEH CME A 733 CYS MODIFIED RESIDUE HET CME B 733 10 HET CME C 733 10 HET CME A 733 10 HET SO4 B 901 5 HET SO4 B 902 5 HET SO4 B 903 5 HET SO4 B 904 5 HET SO4 B 905 5 HET SO4 B 906 5 HET SO4 B 907 5 HET SO4 B 908 5 HET EDO B 909 4 HET EDO B 910 4 HET SO4 C 901 5 HET SO4 C 902 5 HET SO4 C 903 5 HET EDO C 904 4 HET EDO C 905 4 HET EDO C 906 4 HET EDO C 907 4 HET EDO C 908 4 HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET EDO A 905 4 HET EDO A 906 4 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CME 3(C5 H11 N O3 S2) FORMUL 4 SO4 15(O4 S 2-) FORMUL 12 EDO 9(C2 H6 O2) FORMUL 28 HOH *511(H2 O) HELIX 1 AA1 THR B 585 GLU B 594 1 10 HELIX 2 AA2 GLY B 631 ILE B 645 1 15 HELIX 3 AA3 SER B 674 GLY B 681 1 8 HELIX 4 AA4 GLU B 682 LYS B 687 1 6 HELIX 5 AA5 ASP B 690 THR B 710 1 21 HELIX 6 AA6 LYS B 722 SER B 724 5 3 HELIX 7 AA7 ASN B 738 SER B 742 5 5 HELIX 8 AA8 GLU B 767 GLN B 772 1 6 HELIX 9 AA9 SER B 775 GLY B 793 1 19 HELIX 10 AB1 PRO B 802 TRP B 806 5 5 HELIX 11 AB2 SER B 807 GLY B 818 1 12 HELIX 12 AB3 LYS B 820 ILE B 824 5 5 HELIX 13 AB4 ASP B 826 LYS B 830 5 5 HELIX 14 AB5 HIS B 834 LEU B 849 1 16 HELIX 15 AB6 PHE B 852 ARG B 856 5 5 HELIX 16 AB7 SER B 858 ASN B 875 1 18 HELIX 17 AB8 THR C 585 GLU C 594 1 10 HELIX 18 AB9 GLY C 631 ILE C 645 1 15 HELIX 19 AC1 SER C 674 GLY C 681 1 8 HELIX 20 AC2 GLY C 681 LYS C 687 1 7 HELIX 21 AC3 ASP C 690 THR C 710 1 21 HELIX 22 AC4 LYS C 722 SER C 724 5 3 HELIX 23 AC5 GLU C 767 GLN C 772 1 6 HELIX 24 AC6 SER C 775 GLY C 793 1 19 HELIX 25 AC7 PRO C 802 TRP C 806 5 5 HELIX 26 AC8 SER C 807 GLY C 818 1 12 HELIX 27 AC9 LYS C 820 VAL C 825 5 6 HELIX 28 AD1 ASP C 826 LYS C 830 5 5 HELIX 29 AD2 HIS C 834 LEU C 849 1 16 HELIX 30 AD3 PHE C 852 ARG C 856 5 5 HELIX 31 AD4 SER C 858 ASN C 875 1 18 HELIX 32 AD5 THR A 585 THR A 593 1 9 HELIX 33 AD6 ALA A 626 THR A 629 5 4 HELIX 34 AD7 GLY A 631 SER A 643 1 13 HELIX 35 AD8 SER A 674 GLY A 681 1 8 HELIX 36 AD9 GLU A 682 ARG A 686 5 5 HELIX 37 AE1 ASP A 690 THR A 710 1 21 HELIX 38 AE2 LYS A 722 SER A 724 5 3 HELIX 39 AE3 GLU A 767 GLN A 772 1 6 HELIX 40 AE4 SER A 775 GLY A 793 1 19 HELIX 41 AE5 PRO A 802 TRP A 806 5 5 HELIX 42 AE6 SER A 807 GLY A 818 1 12 HELIX 43 AE7 LYS A 820 ILE A 824 5 5 HELIX 44 AE8 ASP A 826 LYS A 830 5 5 HELIX 45 AE9 HIS A 834 LEU A 849 1 16 HELIX 46 AF1 PHE A 852 ARG A 856 5 5 HELIX 47 AF2 SER A 858 ASN A 875 1 18 SHEET 1 AA1 6 GLN B 582 ALA B 583 0 SHEET 2 AA1 6 GLY B 655 GLU B 659 1 O TYR B 656 N GLN B 582 SHEET 3 AA1 6 GLN B 662 PRO B 668 -1 O ILE B 664 N CYS B 657 SHEET 4 AA1 6 GLU B 618 LYS B 622 -1 N LYS B 622 O LEU B 665 SHEET 5 AA1 6 SER B 607 THR B 612 -1 N TYR B 609 O VAL B 621 SHEET 6 AA1 6 LEU B 599 GLU B 602 -1 N ILE B 600 O VAL B 608 SHEET 1 AA2 2 VAL B 716 ILE B 717 0 SHEET 2 AA2 2 LYS B 743 TYR B 744 -1 O LYS B 743 N ILE B 717 SHEET 1 AA3 2 ILE B 726 LEU B 728 0 SHEET 2 AA3 2 ALA B 734 VAL B 736 -1 O LYS B 735 N LEU B 727 SHEET 1 AA4 6 GLN C 582 ALA C 583 0 SHEET 2 AA4 6 GLY C 655 GLU C 659 1 O TYR C 656 N GLN C 582 SHEET 3 AA4 6 GLN C 662 PRO C 668 -1 O ILE C 664 N CYS C 657 SHEET 4 AA4 6 GLU C 618 SER C 625 -1 N ARG C 624 O GLN C 663 SHEET 5 AA4 6 SER C 607 THR C 612 -1 N TYR C 609 O VAL C 621 SHEET 6 AA4 6 LEU C 599 GLU C 602 -1 N ILE C 600 O VAL C 608 SHEET 1 AA5 2 VAL C 716 ILE C 717 0 SHEET 2 AA5 2 LYS C 743 TYR C 744 -1 O LYS C 743 N ILE C 717 SHEET 1 AA6 2 ILE C 726 LEU C 728 0 SHEET 2 AA6 2 ALA C 734 VAL C 736 -1 O LYS C 735 N LEU C 727 SHEET 1 AA7 6 GLN A 582 ALA A 583 0 SHEET 2 AA7 6 GLY A 655 GLU A 659 1 O TYR A 656 N GLN A 582 SHEET 3 AA7 6 GLN A 662 PRO A 668 -1 O ILE A 664 N CYS A 657 SHEET 4 AA7 6 GLU A 618 ARG A 624 -1 N LYS A 622 O LEU A 665 SHEET 5 AA7 6 GLY A 606 THR A 612 -1 N TYR A 609 O VAL A 621 SHEET 6 AA7 6 LEU A 599 GLY A 601 -1 N GLY A 601 O VAL A 608 SHEET 1 AA8 2 ILE A 726 LEU A 728 0 SHEET 2 AA8 2 ALA A 734 VAL A 736 -1 O LYS A 735 N LEU A 727 LINK C MET B 732 N CME B 733 1555 1555 1.33 LINK C CME B 733 N ALA B 734 1555 1555 1.33 LINK C MET C 732 N CME C 733 1555 1555 1.33 LINK C CME C 733 N ALA C 734 1555 1555 1.32 LINK C MET A 732 N CME A 733 1555 1555 1.33 LINK C CME A 733 N ALA A 734 1555 1555 1.33 CRYST1 144.870 77.960 101.400 90.00 90.15 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006903 0.000000 0.000018 0.00000 SCALE2 0.000000 0.012827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009862 0.00000