HEADER ANTIMICROBIAL PROTEIN 18-JUN-23 8PGJ TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM1 WITH 2985 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B CARBAPENEMASE VIM-1,METALLO-BETA-LACTAMASE,METALLO- COMPND 5 BETA-LACTAMASE VIM-1,METALLOBETA-LACTAMASE,SUBCLASS B1 METALLO-BETA- COMPND 6 LACTAMASE VIM-1,VIM-1,VIM-1 METALLO-BETA-LACTAMASE,VIM-1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM, BLAVIM-1, CAZ10_38240, CAZ10_38245; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS COMPLEX, METALLO-BETA-LACTAMASE, INHIBITOR, ZINC, INDOLE CARBOXYLATE, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.CALVOPINA,J.BREM,A.J.M.FARLEY,M.D.ALLEN,C.J.SCHOFIELD REVDAT 1 10-JUL-24 8PGJ 0 JRNL AUTH K.CALVOPINA,J.BREM,A.J.M.FARLEY,M.D.ALLEN,C.J.SCHOFIELD JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM1 WITH JRNL TITL 2 2985 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 61155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 6028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0500 - 3.7200 0.98 4095 189 0.1639 0.1572 REMARK 3 2 3.7200 - 2.9600 0.98 4079 206 0.1374 0.1431 REMARK 3 3 2.9500 - 2.5800 0.99 4027 299 0.1301 0.1322 REMARK 3 4 2.5800 - 2.3500 0.99 4082 234 0.1170 0.1341 REMARK 3 5 2.3500 - 2.1800 0.99 4098 203 0.1115 0.1406 REMARK 3 6 2.1800 - 2.0500 0.99 4145 218 0.1073 0.1246 REMARK 3 7 2.0500 - 1.9500 0.98 4042 182 0.1035 0.1322 REMARK 3 8 1.9500 - 1.8600 0.99 4199 173 0.1026 0.1317 REMARK 3 9 1.8600 - 1.7900 0.99 4121 203 0.1009 0.1106 REMARK 3 10 1.7900 - 1.7300 1.00 4187 214 0.0967 0.1188 REMARK 3 11 1.7300 - 1.6700 1.00 4148 184 0.0970 0.1041 REMARK 3 12 1.6700 - 1.6300 1.00 4170 201 0.0919 0.1321 REMARK 3 13 1.6300 - 1.5800 1.00 4132 240 0.0912 0.1334 REMARK 3 14 1.5800 - 1.5500 1.00 4168 177 0.0915 0.1126 REMARK 3 15 1.5500 - 1.5100 1.00 4128 222 0.0919 0.1242 REMARK 3 16 1.5100 - 1.4800 1.00 4116 257 0.0968 0.1212 REMARK 3 17 1.4800 - 1.4500 1.00 4161 250 0.0976 0.1364 REMARK 3 18 1.4500 - 1.4200 1.00 4124 238 0.0983 0.1286 REMARK 3 19 1.4200 - 1.4000 1.00 4155 207 0.0999 0.1300 REMARK 3 20 1.4000 - 1.3700 1.00 4162 217 0.1009 0.1419 REMARK 3 21 1.3700 - 1.3500 1.00 4127 214 0.1026 0.1485 REMARK 3 22 1.3500 - 1.3300 1.00 4172 241 0.1065 0.1324 REMARK 3 23 1.3300 - 1.3100 1.00 4129 226 0.1172 0.1571 REMARK 3 24 1.3100 - 1.2900 0.99 4162 195 0.1297 0.1471 REMARK 3 25 1.2900 - 1.2700 0.90 3738 143 0.1325 0.1708 REMARK 3 26 1.2700 - 1.2600 0.79 3316 185 0.1385 0.1864 REMARK 3 27 1.2600 - 1.2400 0.72 3007 153 0.1492 0.1904 REMARK 3 28 1.2400 - 1.2300 0.64 2635 141 0.1623 0.1792 REMARK 3 29 1.2300 - 1.2100 0.57 2340 125 0.1789 0.2099 REMARK 3 30 1.2100 - 1.2000 0.49 2116 91 0.1925 0.2104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.078 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.655 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2065 REMARK 3 ANGLE : 1.785 2865 REMARK 3 CHIRALITY : 0.136 315 REMARK 3 PLANARITY : 0.017 380 REMARK 3 DIHEDRAL : 28.014 338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979499 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 34.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM PHOSPHATE 0.1M TRISHCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.06350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 429 O HOH A 647 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 41 CB VAL A 41 CG1 -0.154 REMARK 500 GLU A 79 CD GLU A 79 OE1 0.074 REMARK 500 SER A 205 CB SER A 205 OG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 127 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 145.76 73.78 REMARK 500 TRP A 87 69.12 67.38 REMARK 500 ALA A 178 -108.24 -150.83 REMARK 500 ALA A 208 32.00 -90.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 710 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 711 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 715 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 717 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 718 DISTANCE = 7.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 98.5 REMARK 620 3 HIS A 179 NE2 100.4 109.7 REMARK 620 4 HOH A 482 O 110.2 123.9 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 98.2 REMARK 620 3 HIS A 240 NE2 81.2 102.7 REMARK 620 4 YMB A 303 O09 160.4 101.0 91.0 REMARK 620 5 HOH A 482 O 81.1 117.9 137.5 93.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AFY RELATED DB: PDB DBREF 8PGJ A 1 266 UNP Q9XAY4 Q9XAY4_PSEAI 1 266 SEQRES 1 A 266 MET LEU LYS VAL ILE SER SER LEU LEU VAL TYR MET THR SEQRES 2 A 266 ALA SER VAL MET ALA VAL ALA SER PRO LEU ALA HIS SER SEQRES 3 A 266 GLY GLU PRO SER GLY GLU TYR PRO THR VAL ASN GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU ALA GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA ASN VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA VAL HIS GLU LEU SER SER THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER VAL GLU ARG ILE GLN LYS HIS TYR PRO GLU ALA GLU SEQRES 19 A 266 VAL VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU GLN HIS THR ALA ASN VAL VAL LYS ALA HIS LYS SEQRES 21 A 266 ASN ARG SER VAL ALA GLU HET ZN A 301 1 HET ZN A 302 1 HET YMB A 303 128 HET DMS A 304 10 HETNAM ZN ZINC ION HETNAM YMB 7-[(1~{S})-1-[5-[(3-AZANYLAZETIDIN-1-YL)METHYL]-2- HETNAM 2 YMB OXIDANYLIDENE-1,3-OXAZOLIDIN-3-YL]ETHYL]-3-[3- HETNAM 3 YMB FLUORANYL-4-(METHYLSULFONYLMETHYL)PHENYL]-1~{H}- HETNAM 4 YMB INDOLE-2-CARBOXYLIC ACID HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 YMB C26 H29 F N4 O6 S FORMUL 5 DMS C2 H6 O S FORMUL 6 HOH *318(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 VAL A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 SHEET 1 AA1 7 VAL A 44 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N THR A 108 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 LINK NE2 HIS A 114 ZN A ZN A 301 1555 1555 2.09 LINK ND1 HIS A 116 ZN A ZN A 301 1555 1555 2.02 LINK OD2 ASP A 118 ZN A ZN A 302 1555 1555 2.35 LINK NE2 HIS A 179 ZN A ZN A 301 1555 1555 2.01 LINK SG CYS A 198 ZN A ZN A 302 1555 1555 2.31 LINK NE2 HIS A 240 ZN A ZN A 302 1555 1555 2.11 LINK ZN A ZN A 301 O HOH A 482 1555 1555 1.92 LINK ZN A ZN A 302 O09AYMB A 303 1555 1555 2.25 LINK ZN A ZN A 302 O HOH A 482 1555 1555 2.01 CRYST1 39.404 68.127 40.283 90.00 93.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025378 0.000000 0.001672 0.00000 SCALE2 0.000000 0.014678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024878 0.00000