HEADER VIRAL PROTEIN 20-JUN-23 8PHT TITLE SCAFFOLD RINGS INSIDE THE BORRELIA BACTERIOPHAGE BB1 PROCAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCAFFOLD PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIELLA BURGDORFERI B31; SOURCE 3 ORGANISM_TAXID: 224326; SOURCE 4 GENE: BB_L02; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: AI KEYWDS BACTERIOPHAGE, SCAFFOLD, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.RUMNIEKS,T.FUZIK,K.TARS REVDAT 3 15-NOV-23 8PHT 1 JRNL REVDAT 2 01-NOV-23 8PHT 1 JRNL REVDAT 1 12-JUL-23 8PHT 0 JRNL AUTH J.RUMNIEKS,T.FUZIK,K.TARS JRNL TITL STRUCTURE OF THE BORRELIA BACTERIOPHAGE PHI BB1 PROCAPSID. JRNL REF J.MOL.BIOL. V. 435 68323 2023 JRNL REFN ESSN 1089-8638 JRNL PMID 37866476 JRNL DOI 10.1016/J.JMB.2023.168323 REMARK 2 REMARK 2 RESOLUTION. 6.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, GCTF, COOT, RELION, RELION, REMARK 3 RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.370 REMARK 3 NUMBER OF PARTICLES : 25958 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8PHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131293. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SCAFFOLD OF THE BORRELIA REMARK 245 BACTERIOPHAGE BB1 PROCAPSID REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 64-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.923879 0.382683 0.000000 328.89433 REMARK 350 BIOMT2 2 -0.382683 -0.923879 0.000000 492.22515 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.707107 0.707107 0.000000 213.40200 REMARK 350 BIOMT2 3 -0.707107 -0.707107 0.000000 515.19800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.382683 0.923879 0.000000 97.90967 REMARK 350 BIOMT2 4 -0.923879 -0.382683 0.000000 492.22515 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 -1.000000 0.000000 0.000000 426.80400 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.382683 0.923879 0.000000 -65.42115 REMARK 350 BIOMT2 6 -0.923879 0.382683 0.000000 328.89433 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 0.707107 0.707107 0.000000 -88.39400 REMARK 350 BIOMT2 7 -0.707107 0.707107 0.000000 213.40200 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 8 0.923879 0.382683 0.000000 -65.42115 REMARK 350 BIOMT2 8 -0.382683 0.923879 0.000000 97.90967 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 9 0.923879 -0.382683 0.000000 97.90967 REMARK 350 BIOMT2 9 0.382683 0.923879 0.000000 -65.42115 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 0.707107 -0.707107 0.000000 213.40200 REMARK 350 BIOMT2 10 0.707107 0.707107 0.000000 -88.39400 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 11 0.382683 -0.923879 0.000000 328.89433 REMARK 350 BIOMT2 11 0.923879 0.382683 0.000000 -65.42115 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 426.80400 REMARK 350 BIOMT2 12 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 13 -0.382683 -0.923879 0.000000 492.22515 REMARK 350 BIOMT2 13 0.923879 -0.382683 0.000000 97.90967 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 14 -0.707107 -0.707107 0.000000 515.19800 REMARK 350 BIOMT2 14 0.707107 -0.707107 0.000000 213.40200 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 15 -0.923879 -0.382683 0.000000 492.22515 REMARK 350 BIOMT2 15 0.382683 -0.923879 0.000000 328.89433 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 426.80400 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 426.80400 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 GLN A 11 REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 GLU A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 ILE A 20 REMARK 465 LYS A 21 REMARK 465 ALA A 22 REMARK 465 ASP A 23 REMARK 465 THR A 24 REMARK 465 LYS A 25 REMARK 465 VAL A 26 REMARK 465 ILE A 27 REMARK 465 SER A 28 REMARK 465 VAL A 29 REMARK 465 GLN A 30 REMARK 465 GLU A 31 REMARK 465 PHE A 32 REMARK 465 GLU A 33 REMARK 465 GLU A 34 REMARK 465 TYR A 35 REMARK 465 MET A 36 REMARK 465 ARG A 37 REMARK 465 PHE A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 40 REMARK 465 GLN A 41 REMARK 465 ALA A 42 REMARK 465 ASN A 43 REMARK 465 SER A 44 REMARK 465 LYS A 45 REMARK 465 SER A 46 REMARK 465 LYS A 47 REMARK 465 GLU A 48 REMARK 465 THR A 49 REMARK 465 SER A 50 REMARK 465 ARG A 51 REMARK 465 ASP A 52 REMARK 465 ASN A 164 REMARK 465 ALA A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 SER A 168 REMARK 465 SER A 169 REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 VAL A 172 REMARK 465 ASP A 173 REMARK 465 SER A 174 REMARK 465 ILE A 175 REMARK 465 LYS A 176 REMARK 465 GLY A 177 REMARK 465 ASN A 178 REMARK 465 ILE A 179 REMARK 465 ALA A 180 REMARK 465 ILE A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 GLU A 184 REMARK 465 GLU A 185 REMARK 465 ARG A 186 REMARK 465 ALA A 187 REMARK 465 SER A 188 REMARK 465 LEU A 189 REMARK 465 LEU A 190 REMARK 465 ASP A 191 REMARK 465 SER A 192 REMARK 465 ASN A 193 REMARK 465 PHE A 194 REMARK 465 VAL A 195 REMARK 465 PRO A 196 REMARK 465 ILE A 197 REMARK 465 ASN A 198 REMARK 465 PHE A 199 REMARK 465 THR A 200 REMARK 465 GLU A 201 REMARK 465 PHE A 202 REMARK 465 VAL A 203 REMARK 465 GLN A 204 REMARK 465 ALA A 205 REMARK 465 ILE A 206 REMARK 465 SER A 207 REMARK 465 ASN A 208 REMARK 465 THR A 209 REMARK 465 TYR A 210 REMARK 465 LYS A 211 REMARK 465 GLN A 212 REMARK 465 ARG A 213 REMARK 465 ARG A 214 REMARK 465 ILE A 215 REMARK 465 GLN A 216 REMARK 465 PHE A 217 REMARK 465 TYR A 218 REMARK 465 GLU A 219 REMARK 465 ASN A 220 REMARK 465 LEU A 221 REMARK 465 LYS A 222 REMARK 465 ARG A 223 REMARK 465 HIS A 224 REMARK 465 LYS A 225 REMARK 465 ARG A 226 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 ILE A 229 REMARK 465 ALA A 230 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 ASP B 9 REMARK 465 LEU B 10 REMARK 465 GLN B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 ASP B 14 REMARK 465 LYS B 15 REMARK 465 GLU B 16 REMARK 465 GLU B 17 REMARK 465 GLN B 18 REMARK 465 GLN B 19 REMARK 465 ILE B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 ASP B 23 REMARK 465 THR B 24 REMARK 465 LYS B 25 REMARK 465 VAL B 26 REMARK 465 ILE B 27 REMARK 465 SER B 28 REMARK 465 VAL B 29 REMARK 465 GLN B 30 REMARK 465 GLU B 31 REMARK 465 PHE B 32 REMARK 465 GLU B 33 REMARK 465 GLU B 34 REMARK 465 TYR B 35 REMARK 465 MET B 36 REMARK 465 ARG B 37 REMARK 465 PHE B 38 REMARK 465 LYS B 39 REMARK 465 GLU B 40 REMARK 465 GLN B 41 REMARK 465 ALA B 42 REMARK 465 ASN B 43 REMARK 465 SER B 44 REMARK 465 LYS B 45 REMARK 465 SER B 46 REMARK 465 LYS B 47 REMARK 465 GLU B 48 REMARK 465 THR B 49 REMARK 465 SER B 50 REMARK 465 ARG B 51 REMARK 465 ASP B 52 REMARK 465 LEU B 53 REMARK 465 SER B 54 REMARK 465 ILE B 55 REMARK 465 ASN B 56 REMARK 465 GLU B 57 REMARK 465 ARG B 58 REMARK 465 ILE B 59 REMARK 465 THR B 60 REMARK 465 LYS B 61 REMARK 465 GLU B 62 REMARK 465 LEU B 63 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 LYS B 163 REMARK 465 ASN B 164 REMARK 465 ALA B 165 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 465 SER B 170 REMARK 465 SER B 171 REMARK 465 VAL B 172 REMARK 465 ASP B 173 REMARK 465 SER B 174 REMARK 465 ILE B 175 REMARK 465 LYS B 176 REMARK 465 GLY B 177 REMARK 465 ASN B 178 REMARK 465 ILE B 179 REMARK 465 ALA B 180 REMARK 465 ILE B 181 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 GLU B 184 REMARK 465 GLU B 185 REMARK 465 ARG B 186 REMARK 465 ALA B 187 REMARK 465 SER B 188 REMARK 465 LEU B 189 REMARK 465 LEU B 190 REMARK 465 ASP B 191 REMARK 465 SER B 192 REMARK 465 ASN B 193 REMARK 465 PHE B 194 REMARK 465 VAL B 195 REMARK 465 PRO B 196 REMARK 465 ILE B 197 REMARK 465 ASN B 198 REMARK 465 PHE B 199 REMARK 465 THR B 200 REMARK 465 GLU B 201 REMARK 465 PHE B 202 REMARK 465 VAL B 203 REMARK 465 GLN B 204 REMARK 465 ALA B 205 REMARK 465 ILE B 206 REMARK 465 SER B 207 REMARK 465 ASN B 208 REMARK 465 THR B 209 REMARK 465 TYR B 210 REMARK 465 LYS B 211 REMARK 465 GLN B 212 REMARK 465 ARG B 213 REMARK 465 ARG B 214 REMARK 465 ILE B 215 REMARK 465 GLN B 216 REMARK 465 PHE B 217 REMARK 465 TYR B 218 REMARK 465 GLU B 219 REMARK 465 ASN B 220 REMARK 465 LEU B 221 REMARK 465 LYS B 222 REMARK 465 ARG B 223 REMARK 465 HIS B 224 REMARK 465 LYS B 225 REMARK 465 ARG B 226 REMARK 465 THR B 227 REMARK 465 SER B 228 REMARK 465 ILE B 229 REMARK 465 ALA B 230 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 LYS C 7 REMARK 465 GLU C 8 REMARK 465 ASP C 9 REMARK 465 LEU C 10 REMARK 465 GLN C 11 REMARK 465 ALA C 12 REMARK 465 GLN C 13 REMARK 465 ASP C 14 REMARK 465 LYS C 15 REMARK 465 GLU C 16 REMARK 465 GLU C 17 REMARK 465 GLN C 18 REMARK 465 GLN C 19 REMARK 465 ILE C 20 REMARK 465 LYS C 21 REMARK 465 ALA C 22 REMARK 465 ASP C 23 REMARK 465 THR C 24 REMARK 465 LYS C 25 REMARK 465 VAL C 26 REMARK 465 ILE C 27 REMARK 465 SER C 28 REMARK 465 VAL C 29 REMARK 465 GLN C 30 REMARK 465 GLU C 31 REMARK 465 PHE C 32 REMARK 465 GLU C 33 REMARK 465 GLU C 34 REMARK 465 TYR C 35 REMARK 465 MET C 36 REMARK 465 ARG C 37 REMARK 465 PHE C 38 REMARK 465 LYS C 39 REMARK 465 GLU C 40 REMARK 465 GLN C 41 REMARK 465 ALA C 42 REMARK 465 ASN C 43 REMARK 465 SER C 44 REMARK 465 LYS C 45 REMARK 465 SER C 46 REMARK 465 LYS C 47 REMARK 465 GLU C 48 REMARK 465 THR C 49 REMARK 465 SER C 50 REMARK 465 ARG C 51 REMARK 465 ASP C 52 REMARK 465 ASN C 164 REMARK 465 ALA C 165 REMARK 465 SER C 166 REMARK 465 SER C 167 REMARK 465 SER C 168 REMARK 465 SER C 169 REMARK 465 SER C 170 REMARK 465 SER C 171 REMARK 465 VAL C 172 REMARK 465 ASP C 173 REMARK 465 SER C 174 REMARK 465 ILE C 175 REMARK 465 LYS C 176 REMARK 465 GLY C 177 REMARK 465 ASN C 178 REMARK 465 ILE C 179 REMARK 465 ALA C 180 REMARK 465 ILE C 181 REMARK 465 LYS C 182 REMARK 465 SER C 183 REMARK 465 GLU C 184 REMARK 465 GLU C 185 REMARK 465 ARG C 186 REMARK 465 ALA C 187 REMARK 465 SER C 188 REMARK 465 LEU C 189 REMARK 465 LEU C 190 REMARK 465 ASP C 191 REMARK 465 SER C 192 REMARK 465 ASN C 193 REMARK 465 PHE C 194 REMARK 465 VAL C 195 REMARK 465 PRO C 196 REMARK 465 ILE C 197 REMARK 465 ASN C 198 REMARK 465 PHE C 199 REMARK 465 THR C 200 REMARK 465 GLU C 201 REMARK 465 PHE C 202 REMARK 465 VAL C 203 REMARK 465 GLN C 204 REMARK 465 ALA C 205 REMARK 465 ILE C 206 REMARK 465 SER C 207 REMARK 465 ASN C 208 REMARK 465 THR C 209 REMARK 465 TYR C 210 REMARK 465 LYS C 211 REMARK 465 GLN C 212 REMARK 465 ARG C 213 REMARK 465 ARG C 214 REMARK 465 ILE C 215 REMARK 465 GLN C 216 REMARK 465 PHE C 217 REMARK 465 TYR C 218 REMARK 465 GLU C 219 REMARK 465 ASN C 220 REMARK 465 LEU C 221 REMARK 465 LYS C 222 REMARK 465 ARG C 223 REMARK 465 HIS C 224 REMARK 465 LYS C 225 REMARK 465 ARG C 226 REMARK 465 THR C 227 REMARK 465 SER C 228 REMARK 465 ILE C 229 REMARK 465 ALA C 230 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 LYS D 4 REMARK 465 GLU D 5 REMARK 465 GLU D 6 REMARK 465 LYS D 7 REMARK 465 GLU D 8 REMARK 465 ASP D 9 REMARK 465 LEU D 10 REMARK 465 GLN D 11 REMARK 465 ALA D 12 REMARK 465 GLN D 13 REMARK 465 ASP D 14 REMARK 465 LYS D 15 REMARK 465 GLU D 16 REMARK 465 GLU D 17 REMARK 465 GLN D 18 REMARK 465 GLN D 19 REMARK 465 ILE D 20 REMARK 465 LYS D 21 REMARK 465 ALA D 22 REMARK 465 ASP D 23 REMARK 465 THR D 24 REMARK 465 LYS D 25 REMARK 465 VAL D 26 REMARK 465 ILE D 27 REMARK 465 SER D 28 REMARK 465 VAL D 29 REMARK 465 GLN D 30 REMARK 465 GLU D 31 REMARK 465 PHE D 32 REMARK 465 GLU D 33 REMARK 465 GLU D 34 REMARK 465 TYR D 35 REMARK 465 MET D 36 REMARK 465 ARG D 37 REMARK 465 PHE D 38 REMARK 465 LYS D 39 REMARK 465 GLU D 40 REMARK 465 GLN D 41 REMARK 465 ALA D 42 REMARK 465 ASN D 43 REMARK 465 SER D 44 REMARK 465 LYS D 45 REMARK 465 SER D 46 REMARK 465 LYS D 47 REMARK 465 GLU D 48 REMARK 465 THR D 49 REMARK 465 SER D 50 REMARK 465 ARG D 51 REMARK 465 ASP D 52 REMARK 465 LEU D 53 REMARK 465 SER D 54 REMARK 465 ILE D 55 REMARK 465 ASN D 56 REMARK 465 GLU D 57 REMARK 465 ARG D 58 REMARK 465 ILE D 59 REMARK 465 THR D 60 REMARK 465 LYS D 61 REMARK 465 GLU D 62 REMARK 465 LEU D 63 REMARK 465 ALA D 64 REMARK 465 GLU D 65 REMARK 465 LYS D 163 REMARK 465 ASN D 164 REMARK 465 ALA D 165 REMARK 465 SER D 166 REMARK 465 SER D 167 REMARK 465 SER D 168 REMARK 465 SER D 169 REMARK 465 SER D 170 REMARK 465 SER D 171 REMARK 465 VAL D 172 REMARK 465 ASP D 173 REMARK 465 SER D 174 REMARK 465 ILE D 175 REMARK 465 LYS D 176 REMARK 465 GLY D 177 REMARK 465 ASN D 178 REMARK 465 ILE D 179 REMARK 465 ALA D 180 REMARK 465 ILE D 181 REMARK 465 LYS D 182 REMARK 465 SER D 183 REMARK 465 GLU D 184 REMARK 465 GLU D 185 REMARK 465 ARG D 186 REMARK 465 ALA D 187 REMARK 465 SER D 188 REMARK 465 LEU D 189 REMARK 465 LEU D 190 REMARK 465 ASP D 191 REMARK 465 SER D 192 REMARK 465 ASN D 193 REMARK 465 PHE D 194 REMARK 465 VAL D 195 REMARK 465 PRO D 196 REMARK 465 ILE D 197 REMARK 465 ASN D 198 REMARK 465 PHE D 199 REMARK 465 THR D 200 REMARK 465 GLU D 201 REMARK 465 PHE D 202 REMARK 465 VAL D 203 REMARK 465 GLN D 204 REMARK 465 ALA D 205 REMARK 465 ILE D 206 REMARK 465 SER D 207 REMARK 465 ASN D 208 REMARK 465 THR D 209 REMARK 465 TYR D 210 REMARK 465 LYS D 211 REMARK 465 GLN D 212 REMARK 465 ARG D 213 REMARK 465 ARG D 214 REMARK 465 ILE D 215 REMARK 465 GLN D 216 REMARK 465 PHE D 217 REMARK 465 TYR D 218 REMARK 465 GLU D 219 REMARK 465 ASN D 220 REMARK 465 LEU D 221 REMARK 465 LYS D 222 REMARK 465 ARG D 223 REMARK 465 HIS D 224 REMARK 465 LYS D 225 REMARK 465 ARG D 226 REMARK 465 THR D 227 REMARK 465 SER D 228 REMARK 465 ILE D 229 REMARK 465 ALA D 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 136 -5.78 68.37 REMARK 500 LEU B 94 -66.00 -92.24 REMARK 500 LYS B 136 -2.83 68.76 REMARK 500 LYS C 136 -5.75 68.35 REMARK 500 LEU D 94 -65.96 -92.26 REMARK 500 LYS D 136 -2.90 68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-17674 RELATED DB: EMDB REMARK 900 SCAFFOLD RINGS INSIDE THE BORRELIA BACTERIOPHAGE BB1 PROCAPSID DBREF 8PHT A 1 230 UNP Q9R2Q2 Q9R2Q2_BORBU 1 230 DBREF 8PHT B 1 230 UNP Q9R2Q2 Q9R2Q2_BORBU 1 230 DBREF 8PHT C 1 230 UNP Q9R2Q2 Q9R2Q2_BORBU 1 230 DBREF 8PHT D 1 230 UNP Q9R2Q2 Q9R2Q2_BORBU 1 230 SEQRES 1 A 230 MET THR GLU LYS GLU GLU LYS GLU ASP LEU GLN ALA GLN SEQRES 2 A 230 ASP LYS GLU GLU GLN GLN ILE LYS ALA ASP THR LYS VAL SEQRES 3 A 230 ILE SER VAL GLN GLU PHE GLU GLU TYR MET ARG PHE LYS SEQRES 4 A 230 GLU GLN ALA ASN SER LYS SER LYS GLU THR SER ARG ASP SEQRES 5 A 230 LEU SER ILE ASN GLU ARG ILE THR LYS GLU LEU ALA GLU SEQRES 6 A 230 VAL GLU GLU ARG GLU ARG ILE GLU LYS GLN LEU LEU LEU SEQRES 7 A 230 GLU ALA GLU ARG ILE ASN GLU ILE ASP THR LEU ALA LYS SEQRES 8 A 230 ALA HIS LEU SER ASN HIS PHE ASN LYS GLU VAL LEU LEU SEQRES 9 A 230 ALA LYS GLY TYR THR LEU LYS ASP ILE MET GLN ALA GLN SEQRES 10 A 230 ARG ARG GLU LEU VAL ARG LYS PHE VAL PRO ILE GLU GLN SEQRES 11 A 230 ILE LYS ALA ILE ALA LYS VAL SER ASP ILE SER HIS ILE SEQRES 12 A 230 ASP GLY GLU ILE LEU GLU GLN LEU VAL SER LEU ALA LYS SEQRES 13 A 230 VAL ASN ILE LYS LEU ARG LYS ASN ALA SER SER SER SER SEQRES 14 A 230 SER SER VAL ASP SER ILE LYS GLY ASN ILE ALA ILE LYS SEQRES 15 A 230 SER GLU GLU ARG ALA SER LEU LEU ASP SER ASN PHE VAL SEQRES 16 A 230 PRO ILE ASN PHE THR GLU PHE VAL GLN ALA ILE SER ASN SEQRES 17 A 230 THR TYR LYS GLN ARG ARG ILE GLN PHE TYR GLU ASN LEU SEQRES 18 A 230 LYS ARG HIS LYS ARG THR SER ILE ALA SEQRES 1 B 230 MET THR GLU LYS GLU GLU LYS GLU ASP LEU GLN ALA GLN SEQRES 2 B 230 ASP LYS GLU GLU GLN GLN ILE LYS ALA ASP THR LYS VAL SEQRES 3 B 230 ILE SER VAL GLN GLU PHE GLU GLU TYR MET ARG PHE LYS SEQRES 4 B 230 GLU GLN ALA ASN SER LYS SER LYS GLU THR SER ARG ASP SEQRES 5 B 230 LEU SER ILE ASN GLU ARG ILE THR LYS GLU LEU ALA GLU SEQRES 6 B 230 VAL GLU GLU ARG GLU ARG ILE GLU LYS GLN LEU LEU LEU SEQRES 7 B 230 GLU ALA GLU ARG ILE ASN GLU ILE ASP THR LEU ALA LYS SEQRES 8 B 230 ALA HIS LEU SER ASN HIS PHE ASN LYS GLU VAL LEU LEU SEQRES 9 B 230 ALA LYS GLY TYR THR LEU LYS ASP ILE MET GLN ALA GLN SEQRES 10 B 230 ARG ARG GLU LEU VAL ARG LYS PHE VAL PRO ILE GLU GLN SEQRES 11 B 230 ILE LYS ALA ILE ALA LYS VAL SER ASP ILE SER HIS ILE SEQRES 12 B 230 ASP GLY GLU ILE LEU GLU GLN LEU VAL SER LEU ALA LYS SEQRES 13 B 230 VAL ASN ILE LYS LEU ARG LYS ASN ALA SER SER SER SER SEQRES 14 B 230 SER SER VAL ASP SER ILE LYS GLY ASN ILE ALA ILE LYS SEQRES 15 B 230 SER GLU GLU ARG ALA SER LEU LEU ASP SER ASN PHE VAL SEQRES 16 B 230 PRO ILE ASN PHE THR GLU PHE VAL GLN ALA ILE SER ASN SEQRES 17 B 230 THR TYR LYS GLN ARG ARG ILE GLN PHE TYR GLU ASN LEU SEQRES 18 B 230 LYS ARG HIS LYS ARG THR SER ILE ALA SEQRES 1 C 230 MET THR GLU LYS GLU GLU LYS GLU ASP LEU GLN ALA GLN SEQRES 2 C 230 ASP LYS GLU GLU GLN GLN ILE LYS ALA ASP THR LYS VAL SEQRES 3 C 230 ILE SER VAL GLN GLU PHE GLU GLU TYR MET ARG PHE LYS SEQRES 4 C 230 GLU GLN ALA ASN SER LYS SER LYS GLU THR SER ARG ASP SEQRES 5 C 230 LEU SER ILE ASN GLU ARG ILE THR LYS GLU LEU ALA GLU SEQRES 6 C 230 VAL GLU GLU ARG GLU ARG ILE GLU LYS GLN LEU LEU LEU SEQRES 7 C 230 GLU ALA GLU ARG ILE ASN GLU ILE ASP THR LEU ALA LYS SEQRES 8 C 230 ALA HIS LEU SER ASN HIS PHE ASN LYS GLU VAL LEU LEU SEQRES 9 C 230 ALA LYS GLY TYR THR LEU LYS ASP ILE MET GLN ALA GLN SEQRES 10 C 230 ARG ARG GLU LEU VAL ARG LYS PHE VAL PRO ILE GLU GLN SEQRES 11 C 230 ILE LYS ALA ILE ALA LYS VAL SER ASP ILE SER HIS ILE SEQRES 12 C 230 ASP GLY GLU ILE LEU GLU GLN LEU VAL SER LEU ALA LYS SEQRES 13 C 230 VAL ASN ILE LYS LEU ARG LYS ASN ALA SER SER SER SER SEQRES 14 C 230 SER SER VAL ASP SER ILE LYS GLY ASN ILE ALA ILE LYS SEQRES 15 C 230 SER GLU GLU ARG ALA SER LEU LEU ASP SER ASN PHE VAL SEQRES 16 C 230 PRO ILE ASN PHE THR GLU PHE VAL GLN ALA ILE SER ASN SEQRES 17 C 230 THR TYR LYS GLN ARG ARG ILE GLN PHE TYR GLU ASN LEU SEQRES 18 C 230 LYS ARG HIS LYS ARG THR SER ILE ALA SEQRES 1 D 230 MET THR GLU LYS GLU GLU LYS GLU ASP LEU GLN ALA GLN SEQRES 2 D 230 ASP LYS GLU GLU GLN GLN ILE LYS ALA ASP THR LYS VAL SEQRES 3 D 230 ILE SER VAL GLN GLU PHE GLU GLU TYR MET ARG PHE LYS SEQRES 4 D 230 GLU GLN ALA ASN SER LYS SER LYS GLU THR SER ARG ASP SEQRES 5 D 230 LEU SER ILE ASN GLU ARG ILE THR LYS GLU LEU ALA GLU SEQRES 6 D 230 VAL GLU GLU ARG GLU ARG ILE GLU LYS GLN LEU LEU LEU SEQRES 7 D 230 GLU ALA GLU ARG ILE ASN GLU ILE ASP THR LEU ALA LYS SEQRES 8 D 230 ALA HIS LEU SER ASN HIS PHE ASN LYS GLU VAL LEU LEU SEQRES 9 D 230 ALA LYS GLY TYR THR LEU LYS ASP ILE MET GLN ALA GLN SEQRES 10 D 230 ARG ARG GLU LEU VAL ARG LYS PHE VAL PRO ILE GLU GLN SEQRES 11 D 230 ILE LYS ALA ILE ALA LYS VAL SER ASP ILE SER HIS ILE SEQRES 12 D 230 ASP GLY GLU ILE LEU GLU GLN LEU VAL SER LEU ALA LYS SEQRES 13 D 230 VAL ASN ILE LYS LEU ARG LYS ASN ALA SER SER SER SER SEQRES 14 D 230 SER SER VAL ASP SER ILE LYS GLY ASN ILE ALA ILE LYS SEQRES 15 D 230 SER GLU GLU ARG ALA SER LEU LEU ASP SER ASN PHE VAL SEQRES 16 D 230 PRO ILE ASN PHE THR GLU PHE VAL GLN ALA ILE SER ASN SEQRES 17 D 230 THR TYR LYS GLN ARG ARG ILE GLN PHE TYR GLU ASN LEU SEQRES 18 D 230 LYS ARG HIS LYS ARG THR SER ILE ALA HELIX 1 AA1 SER A 54 LEU A 94 1 41 HELIX 2 AA2 SER A 95 PHE A 98 5 4 HELIX 3 AA3 ASN A 99 LYS A 106 1 8 HELIX 4 AA4 THR A 109 VAL A 126 1 18 HELIX 5 AA5 PRO A 127 ALA A 135 1 9 HELIX 6 AA6 GLY A 145 LYS A 163 1 19 HELIX 7 AA7 GLU B 67 ALA B 92 1 26 HELIX 8 AA8 ASN B 99 LYS B 106 1 8 HELIX 9 AA9 THR B 109 ARG B 123 1 15 HELIX 10 AB1 PRO B 127 ILE B 134 1 8 HELIX 11 AB2 ASP B 139 ILE B 143 5 5 HELIX 12 AB3 GLY B 145 ARG B 162 1 18 HELIX 13 AB4 SER C 54 LEU C 94 1 41 HELIX 14 AB5 SER C 95 PHE C 98 5 4 HELIX 15 AB6 ASN C 99 LYS C 106 1 8 HELIX 16 AB7 THR C 109 VAL C 126 1 18 HELIX 17 AB8 PRO C 127 ALA C 135 1 9 HELIX 18 AB9 GLY C 145 LYS C 163 1 19 HELIX 19 AC1 GLU D 67 ALA D 92 1 26 HELIX 20 AC2 ASN D 99 LYS D 106 1 8 HELIX 21 AC3 THR D 109 ARG D 123 1 15 HELIX 22 AC4 PRO D 127 ILE D 134 1 8 HELIX 23 AC5 ASP D 139 ILE D 143 5 5 HELIX 24 AC6 GLY D 145 ARG D 162 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000