HEADER DNA BINDING PROTEIN 21-JUN-23 8PI7 TITLE DNA BINDING DOMAIN OF HNF-1A BOUND TO P2-HNF4A PROMOTER DNA VARIANT TITLE 2 (P2 -169C>T) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: E; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHAINS: F; COMPND 8 CHAIN: F; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA; COMPND 13 CHAIN: A, B; COMPND 14 SYNONYM: HNF-1-ALPHA,HNF-1A,LIVER-SPECIFIC TRANSCRIPTION FACTOR LF- COMPND 15 B1,LFB1,TRANSCRIPTION FACTOR 1,TCF-1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: NM_175914.5 C.-169C>T (G.42984276); SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 OTHER_DETAILS: NM_175914.5 C.-169C>T (G.42984276); SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HNF1A, TCF1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING PROTEIN, GENE TRANSCRIPTION, HNF- KEYWDS 2 1A, HNF4A, MODY EXPDTA X-RAY DIFFRACTION AUTHOR L.KIND,M.MYLLYKOSKI,A.RAASAKKA,P.KURSULA REVDAT 1 19-JUN-24 8PI7 0 JRNL AUTH L.KIND,J.MOLNES,E.TJORA,A.RAASAKKA,M.MYLLYKOSKI,K.COLCLOUGH, JRNL AUTH 2 C.SAINT-MARTIN,C.ADELFALK,P.DUSATKOVA,S.PRUHOVA, JRNL AUTH 3 C.VALTONEN-ANDRE,C.BELLANNE-CHANTELOT,T.ARNESEN,P.KURSULA, JRNL AUTH 4 P.R.NJOLSTAD JRNL TITL MOLECULAR MECHANISM OF HNF-1A-MEDIATED HNF4A GENE REGULATION JRNL TITL 2 AND PROMOTER-DRIVEN HNF4A-MODY DIABETES. JRNL REF JCI INSIGHT V. 9 2024 JRNL REFN ISSN 2379-3708 JRNL PMID 38855865 JRNL DOI 10.1172/JCI.INSIGHT.175278 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1400 - 7.5300 0.99 1168 150 0.1599 0.2081 REMARK 3 2 7.5000 - 5.9700 1.00 1213 130 0.2113 0.2641 REMARK 3 3 5.9700 - 5.2100 1.00 1201 143 0.2213 0.2803 REMARK 3 4 5.2100 - 4.7400 1.00 1225 131 0.2152 0.2790 REMARK 3 5 4.7400 - 4.4000 0.99 1195 136 0.2157 0.3065 REMARK 3 6 4.4000 - 4.1400 1.00 1174 135 0.2093 0.3131 REMARK 3 7 4.1400 - 3.9300 1.00 1249 136 0.2274 0.2641 REMARK 3 8 3.9300 - 3.7600 1.00 1190 127 0.2405 0.3644 REMARK 3 9 3.7600 - 3.6200 1.00 1200 128 0.3023 0.3825 REMARK 3 10 3.6200 - 3.4900 1.00 1195 143 0.2877 0.3280 REMARK 3 11 3.4900 - 3.3800 1.00 1251 128 0.3143 0.3601 REMARK 3 12 3.3800 - 3.2900 1.00 1159 129 0.3047 0.3526 REMARK 3 13 3.2900 - 3.2000 0.99 1245 140 0.3630 0.3881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.566 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 112.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 132.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3763 REMARK 3 ANGLE : 0.425 5260 REMARK 3 CHIRALITY : 0.028 562 REMARK 3 PLANARITY : 0.003 545 REMARK 3 DIHEDRAL : 23.727 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 301 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3698 -14.6919 5.1395 REMARK 3 T TENSOR REMARK 3 T11: 2.0082 T22: 1.1999 REMARK 3 T33: 1.5326 T12: -0.0158 REMARK 3 T13: 0.1549 T23: -0.0651 REMARK 3 L TENSOR REMARK 3 L11: 3.6224 L22: 5.3988 REMARK 3 L33: 0.8047 L12: -4.4366 REMARK 3 L13: -1.6461 L23: 2.1293 REMARK 3 S TENSOR REMARK 3 S11: -1.2614 S12: -1.6924 S13: 3.0556 REMARK 3 S21: 0.9773 S22: 0.9048 S23: -1.4968 REMARK 3 S31: -1.3839 S32: 0.7513 S33: 0.1153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 306 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5424 -11.9725 18.9250 REMARK 3 T TENSOR REMARK 3 T11: 1.5540 T22: 1.1286 REMARK 3 T33: 1.1461 T12: 0.0140 REMARK 3 T13: -0.2885 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 3.5194 L22: 2.9082 REMARK 3 L33: 3.6629 L12: 1.3974 REMARK 3 L13: 1.5389 L23: 3.2970 REMARK 3 S TENSOR REMARK 3 S11: 1.0394 S12: -1.0241 S13: -0.9179 REMARK 3 S21: -1.1574 S22: -0.3062 S23: -0.1160 REMARK 3 S31: -0.3842 S32: -1.0124 S33: -0.3771 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 311 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6763 2.1184 31.4183 REMARK 3 T TENSOR REMARK 3 T11: 0.9368 T22: 1.1773 REMARK 3 T33: 1.4636 T12: 0.0997 REMARK 3 T13: 0.0154 T23: -0.1028 REMARK 3 L TENSOR REMARK 3 L11: 6.9742 L22: 4.0555 REMARK 3 L33: 2.6101 L12: -0.8877 REMARK 3 L13: -0.6660 L23: 1.6198 REMARK 3 S TENSOR REMARK 3 S11: 0.7149 S12: -0.1292 S13: 0.6369 REMARK 3 S21: -0.8128 S22: -0.8587 S23: 1.8041 REMARK 3 S31: -0.1696 S32: -1.5098 S33: -0.1437 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 316 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1071 5.6239 44.3024 REMARK 3 T TENSOR REMARK 3 T11: 1.1758 T22: 2.0113 REMARK 3 T33: 1.2379 T12: 0.1516 REMARK 3 T13: -0.0208 T23: 0.1663 REMARK 3 L TENSOR REMARK 3 L11: 4.3671 L22: 3.6635 REMARK 3 L33: 2.9189 L12: -0.3206 REMARK 3 L13: -0.2441 L23: 3.2680 REMARK 3 S TENSOR REMARK 3 S11: 1.3810 S12: -0.4721 S13: -0.2761 REMARK 3 S21: 1.1804 S22: 1.7093 S23: 0.4456 REMARK 3 S31: -0.2153 S32: -3.8926 S33: -3.0376 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 321 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8015 10.2245 57.2730 REMARK 3 T TENSOR REMARK 3 T11: 1.9559 T22: 1.4601 REMARK 3 T33: 2.3870 T12: -0.0607 REMARK 3 T13: 0.0830 T23: -0.1982 REMARK 3 L TENSOR REMARK 3 L11: 1.2187 L22: 1.6365 REMARK 3 L33: 0.6096 L12: 1.1052 REMARK 3 L13: 0.1917 L23: -0.4354 REMARK 3 S TENSOR REMARK 3 S11: -1.6553 S12: 0.5640 S13: -1.3101 REMARK 3 S21: -0.8225 S22: -1.2435 S23: 0.6497 REMARK 3 S31: 1.5662 S32: 0.0330 S33: 1.8340 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 401 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4292 4.8073 41.2310 REMARK 3 T TENSOR REMARK 3 T11: 1.1092 T22: 2.1883 REMARK 3 T33: 1.3099 T12: 0.0791 REMARK 3 T13: 0.1233 T23: -0.2666 REMARK 3 L TENSOR REMARK 3 L11: 1.3295 L22: 3.8448 REMARK 3 L33: 4.6544 L12: -2.1312 REMARK 3 L13: -0.1944 L23: -2.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -2.2792 S13: 0.8229 REMARK 3 S21: 0.0826 S22: 1.0218 S23: -0.9186 REMARK 3 S31: -0.8711 S32: -0.6322 S33: -1.0991 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 411 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5743 -12.3697 14.0207 REMARK 3 T TENSOR REMARK 3 T11: 1.6167 T22: 1.0035 REMARK 3 T33: 1.2059 T12: 0.2421 REMARK 3 T13: -0.0066 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 3.5854 L22: 2.5209 REMARK 3 L33: 3.7358 L12: -0.9170 REMARK 3 L13: -0.1422 L23: 2.7600 REMARK 3 S TENSOR REMARK 3 S11: 0.4720 S12: 0.5324 S13: 0.0317 REMARK 3 S21: 0.4587 S22: -0.2013 S23: -1.3300 REMARK 3 S31: 1.4689 S32: -0.9624 S33: -0.4657 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5494 -16.6703 56.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.9699 T22: 2.2780 REMARK 3 T33: 1.4766 T12: -0.1282 REMARK 3 T13: -0.0197 T23: 0.3770 REMARK 3 L TENSOR REMARK 3 L11: 4.2366 L22: 0.5412 REMARK 3 L33: 1.2022 L12: -0.1953 REMARK 3 L13: -0.9422 L23: -0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.3791 S12: -1.3603 S13: -1.1780 REMARK 3 S21: 0.6457 S22: 0.1821 S23: 1.2301 REMARK 3 S31: 0.6684 S32: -1.3016 S33: 0.3607 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2389 -8.7758 43.3028 REMARK 3 T TENSOR REMARK 3 T11: 0.6983 T22: 1.4113 REMARK 3 T33: 0.7633 T12: 0.0798 REMARK 3 T13: 0.0451 T23: 0.3182 REMARK 3 L TENSOR REMARK 3 L11: 7.9447 L22: 4.6700 REMARK 3 L33: 5.5984 L12: -0.2818 REMARK 3 L13: 1.0660 L23: -0.6615 REMARK 3 S TENSOR REMARK 3 S11: 0.2591 S12: -2.0427 S13: -0.9807 REMARK 3 S21: 0.0440 S22: 0.0276 S23: 0.1633 REMARK 3 S31: -0.1822 S32: -0.8083 S33: -0.1424 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3204 -17.7187 29.8803 REMARK 3 T TENSOR REMARK 3 T11: 1.4328 T22: 1.1259 REMARK 3 T33: 1.2563 T12: 0.3736 REMARK 3 T13: -0.0924 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 6.7709 L22: 4.1248 REMARK 3 L33: 5.0562 L12: 0.2990 REMARK 3 L13: -0.1015 L23: 1.1666 REMARK 3 S TENSOR REMARK 3 S11: 0.5300 S12: 0.0970 S13: -0.0898 REMARK 3 S21: -2.9165 S22: 0.3108 S23: 0.8604 REMARK 3 S31: 0.3138 S32: 0.7759 S33: -0.9880 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2676 -13.5725 20.8245 REMARK 3 T TENSOR REMARK 3 T11: 1.0145 T22: 0.9935 REMARK 3 T33: 1.1418 T12: 0.3265 REMARK 3 T13: 0.0344 T23: -0.1602 REMARK 3 L TENSOR REMARK 3 L11: 3.9732 L22: 2.2820 REMARK 3 L33: 4.2805 L12: 2.7350 REMARK 3 L13: -2.7886 L23: -0.1976 REMARK 3 S TENSOR REMARK 3 S11: -0.1892 S12: -0.2378 S13: -0.3555 REMARK 3 S21: -0.4461 S22: 0.2066 S23: -0.9456 REMARK 3 S31: 0.9103 S32: 1.5722 S33: -0.1039 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0559 6.2499 -2.6425 REMARK 3 T TENSOR REMARK 3 T11: 1.8984 T22: 1.0023 REMARK 3 T33: 1.3469 T12: 0.0810 REMARK 3 T13: -0.4661 T23: 0.1087 REMARK 3 L TENSOR REMARK 3 L11: 0.9889 L22: 7.3831 REMARK 3 L33: 4.2719 L12: 2.4188 REMARK 3 L13: -0.8509 L23: 0.4769 REMARK 3 S TENSOR REMARK 3 S11: 0.5397 S12: 1.4912 S13: -0.3871 REMARK 3 S21: -2.9628 S22: -0.2150 S23: 0.4025 REMARK 3 S31: -0.9707 S32: -0.5469 S33: -0.3352 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9080 8.8989 7.6534 REMARK 3 T TENSOR REMARK 3 T11: 1.3518 T22: 0.6374 REMARK 3 T33: 0.9132 T12: 0.0421 REMARK 3 T13: -0.0787 T23: 0.1605 REMARK 3 L TENSOR REMARK 3 L11: 9.4975 L22: 1.9620 REMARK 3 L33: 5.7911 L12: -0.5703 REMARK 3 L13: 1.5423 L23: 3.1827 REMARK 3 S TENSOR REMARK 3 S11: -0.4495 S12: 0.9605 S13: 2.2693 REMARK 3 S21: 0.7804 S22: -0.0108 S23: -0.3702 REMARK 3 S31: -0.7127 S32: 1.2119 S33: 0.2463 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2824 1.7823 10.4189 REMARK 3 T TENSOR REMARK 3 T11: 1.1225 T22: 0.9117 REMARK 3 T33: 0.8140 T12: 0.1317 REMARK 3 T13: -0.1970 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 3.5542 L22: 3.7273 REMARK 3 L33: 3.9821 L12: 0.2799 REMARK 3 L13: 0.5522 L23: -0.1758 REMARK 3 S TENSOR REMARK 3 S11: -0.2359 S12: -0.1539 S13: -0.3689 REMARK 3 S21: -0.5073 S22: 0.1287 S23: 0.8615 REMARK 3 S31: -0.0438 S32: -0.0617 S33: -0.0575 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6188 10.0526 23.7701 REMARK 3 T TENSOR REMARK 3 T11: 0.9647 T22: 1.2387 REMARK 3 T33: 1.1403 T12: -0.0761 REMARK 3 T13: -0.2239 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 4.9692 L22: 4.9193 REMARK 3 L33: 4.4490 L12: -2.3349 REMARK 3 L13: -0.7835 L23: -1.9445 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: 0.5368 S13: 0.9570 REMARK 3 S21: -0.2795 S22: -0.0132 S23: -0.4320 REMARK 3 S31: 0.0189 S32: 0.4709 S33: 0.0795 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8362 20.3129 31.0683 REMARK 3 T TENSOR REMARK 3 T11: 1.1088 T22: 1.0530 REMARK 3 T33: 1.2046 T12: 0.2641 REMARK 3 T13: 0.0498 T23: -0.1809 REMARK 3 L TENSOR REMARK 3 L11: 4.4693 L22: 3.9242 REMARK 3 L33: 3.7778 L12: 0.4568 REMARK 3 L13: 1.5069 L23: 0.9867 REMARK 3 S TENSOR REMARK 3 S11: -0.4976 S12: -1.1680 S13: 0.8924 REMARK 3 S21: -0.3384 S22: -0.2177 S23: -0.1103 REMARK 3 S31: -1.0542 S32: -0.1615 S33: 0.6337 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 10, 2022 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9655 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 1000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.72800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.13900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.25300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.13900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.72800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.25300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 LEU A 86 REMARK 465 LYS A 87 REMARK 465 GLU A 88 REMARK 465 LEU A 89 REMARK 465 GLN A 182 REMARK 465 GLY A 183 REMARK 465 GLY A 184 REMARK 465 LEU A 185 REMARK 465 ILE A 186 REMARK 465 GLU A 187 REMARK 465 GLU A 188 REMARK 465 PRO A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 ASP A 192 REMARK 465 GLU A 193 REMARK 465 LEU A 194 REMARK 465 PRO A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 ARG A 201 REMARK 465 ARG A 278 REMARK 465 HIS A 279 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 PRO B 84 REMARK 465 ILE B 85 REMARK 465 LEU B 86 REMARK 465 LYS B 87 REMARK 465 GLU B 88 REMARK 465 LEU B 89 REMARK 465 GLY B 181 REMARK 465 GLN B 182 REMARK 465 GLY B 183 REMARK 465 GLY B 184 REMARK 465 LEU B 185 REMARK 465 ILE B 186 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 PRO B 189 REMARK 465 THR B 190 REMARK 465 GLY B 191 REMARK 465 ASP B 192 REMARK 465 GLU B 193 REMARK 465 LEU B 194 REMARK 465 PRO B 195 REMARK 465 THR B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 GLY B 199 REMARK 465 ARG B 200 REMARK 465 PHE B 277 REMARK 465 ARG B 278 REMARK 465 HIS B 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 179 39.20 -76.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PI7 E 301 321 PDB 8PI7 8PI7 301 321 DBREF 8PI7 F 401 421 PDB 8PI7 8PI7 401 421 DBREF 8PI7 A 83 279 UNP P20823 HNF1A_HUMAN 83 279 DBREF 8PI7 B 83 279 UNP P20823 HNF1A_HUMAN 83 279 SEQADV 8PI7 GLY A 82 UNP P20823 EXPRESSION TAG SEQADV 8PI7 GLY B 82 UNP P20823 EXPRESSION TAG SEQRES 1 E 21 DA DC DT DG DG DT DT DA DC DT DC DT DT SEQRES 2 E 21 DT DA DA DT DG DT DA DT SEQRES 1 F 21 DA DT DA DC DA DT DT DA DA DA DG DA DG SEQRES 2 F 21 DT DA DA DC DC DA DG DT SEQRES 1 A 198 GLY PRO PRO ILE LEU LYS GLU LEU GLU ASN LEU SER PRO SEQRES 2 A 198 GLU GLU ALA ALA HIS GLN LYS ALA VAL VAL GLU THR LEU SEQRES 3 A 198 LEU GLN GLU ASP PRO TRP ARG VAL ALA LYS MET VAL LYS SEQRES 4 A 198 SER TYR LEU GLN GLN HIS ASN ILE PRO GLN ARG GLU VAL SEQRES 5 A 198 VAL ASP THR THR GLY LEU ASN GLN SER HIS LEU SER GLN SEQRES 6 A 198 HIS LEU ASN LYS GLY THR PRO MET LYS THR GLN LYS ARG SEQRES 7 A 198 ALA ALA LEU TYR THR TRP TYR VAL ARG LYS GLN ARG GLU SEQRES 8 A 198 VAL ALA GLN GLN PHE THR HIS ALA GLY GLN GLY GLY LEU SEQRES 9 A 198 ILE GLU GLU PRO THR GLY ASP GLU LEU PRO THR LYS LYS SEQRES 10 A 198 GLY ARG ARG ASN ARG PHE LYS TRP GLY PRO ALA SER GLN SEQRES 11 A 198 GLN ILE LEU PHE GLN ALA TYR GLU ARG GLN LYS ASN PRO SEQRES 12 A 198 SER LYS GLU GLU ARG GLU THR LEU VAL GLU GLU CYS ASN SEQRES 13 A 198 ARG ALA GLU CYS ILE GLN ARG GLY VAL SER PRO SER GLN SEQRES 14 A 198 ALA GLN GLY LEU GLY SER ASN LEU VAL THR GLU VAL ARG SEQRES 15 A 198 VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU GLU ALA SEQRES 16 A 198 PHE ARG HIS SEQRES 1 B 198 GLY PRO PRO ILE LEU LYS GLU LEU GLU ASN LEU SER PRO SEQRES 2 B 198 GLU GLU ALA ALA HIS GLN LYS ALA VAL VAL GLU THR LEU SEQRES 3 B 198 LEU GLN GLU ASP PRO TRP ARG VAL ALA LYS MET VAL LYS SEQRES 4 B 198 SER TYR LEU GLN GLN HIS ASN ILE PRO GLN ARG GLU VAL SEQRES 5 B 198 VAL ASP THR THR GLY LEU ASN GLN SER HIS LEU SER GLN SEQRES 6 B 198 HIS LEU ASN LYS GLY THR PRO MET LYS THR GLN LYS ARG SEQRES 7 B 198 ALA ALA LEU TYR THR TRP TYR VAL ARG LYS GLN ARG GLU SEQRES 8 B 198 VAL ALA GLN GLN PHE THR HIS ALA GLY GLN GLY GLY LEU SEQRES 9 B 198 ILE GLU GLU PRO THR GLY ASP GLU LEU PRO THR LYS LYS SEQRES 10 B 198 GLY ARG ARG ASN ARG PHE LYS TRP GLY PRO ALA SER GLN SEQRES 11 B 198 GLN ILE LEU PHE GLN ALA TYR GLU ARG GLN LYS ASN PRO SEQRES 12 B 198 SER LYS GLU GLU ARG GLU THR LEU VAL GLU GLU CYS ASN SEQRES 13 B 198 ARG ALA GLU CYS ILE GLN ARG GLY VAL SER PRO SER GLN SEQRES 14 B 198 ALA GLN GLY LEU GLY SER ASN LEU VAL THR GLU VAL ARG SEQRES 15 B 198 VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU GLU ALA SEQRES 16 B 198 PHE ARG HIS HET CL A 301 1 HET CL B 301 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 2(CL 1-) HELIX 1 AA1 SER A 93 GLU A 110 1 18 HELIX 2 AA2 ASP A 111 ASN A 127 1 17 HELIX 3 AA3 PRO A 129 GLY A 138 1 10 HELIX 4 AA4 ASN A 140 ASN A 149 1 10 HELIX 5 AA5 LYS A 155 HIS A 179 1 25 HELIX 6 AA6 GLY A 207 GLN A 221 1 15 HELIX 7 AA7 SER A 225 ARG A 244 1 20 HELIX 8 AA8 ALA A 251 LEU A 258 5 8 HELIX 9 AA9 THR A 260 PHE A 277 1 18 HELIX 10 AB1 SER B 93 GLU B 110 1 18 HELIX 11 AB2 ASP B 111 ASN B 127 1 17 HELIX 12 AB3 PRO B 129 GLY B 138 1 10 HELIX 13 AB4 ASN B 140 LYS B 150 1 11 HELIX 14 AB5 LYS B 155 HIS B 179 1 25 HELIX 15 AB6 GLY B 207 GLN B 221 1 15 HELIX 16 AB7 SER B 225 ARG B 244 1 20 HELIX 17 AB8 SER B 247 LEU B 258 5 12 HELIX 18 AB9 THR B 260 GLU B 275 1 16 CRYST1 49.456 52.506 210.278 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004756 0.00000