HEADER TRANSFERASE 23-JUN-23 8PJD TITLE CRYSTAL STRUCTURE OF MUS MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE 2 TITLE 2 94-445 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRMT2, HRMT1L1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 1 BOLD-2017; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2449148 KEYWDS PROTEIN ARGININE N-METHYLTRANSFERASE, PRMT, SH3, METHYLATION, KEYWDS 2 TRANSCRIPTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.TROFFER-CHARLIER,N.MARECHAL,L.BONNEFOND,J.CAVARELLI REVDAT 1 10-JUL-24 8PJD 0 JRNL AUTH V.CURA,N.TROFFER-CHARLIER,N.MARECHAL,L.BONNEFOND,J.CAVARELLI JRNL TITL CRYSTAL STRUCTURE OF MUS MUSCULUS PROTEIN ARGININE JRNL TITL 2 METHYLTRANSFERASE 2 94-445 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_4958: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 65234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2500 - 4.6100 1.00 2816 153 0.1777 0.2019 REMARK 3 2 4.6100 - 3.6600 1.00 2708 138 0.1430 0.1548 REMARK 3 3 3.6600 - 3.2000 1.00 2697 145 0.1660 0.1913 REMARK 3 4 3.2000 - 2.9100 0.99 2611 155 0.1701 0.1671 REMARK 3 5 2.9100 - 2.7000 1.00 2676 125 0.1631 0.1658 REMARK 3 6 2.7000 - 2.5400 1.00 2674 134 0.1649 0.1933 REMARK 3 7 2.5400 - 2.4100 1.00 2650 125 0.1574 0.1755 REMARK 3 8 2.4100 - 2.3100 1.00 2629 153 0.1618 0.1829 REMARK 3 9 2.3100 - 2.2200 1.00 2622 142 0.1580 0.1618 REMARK 3 10 2.2200 - 2.1400 1.00 2647 135 0.1592 0.1787 REMARK 3 11 2.1400 - 2.0800 1.00 2626 155 0.1621 0.1726 REMARK 3 12 2.0800 - 2.0200 1.00 2648 133 0.1694 0.1857 REMARK 3 13 2.0200 - 1.9600 1.00 2615 135 0.1671 0.1887 REMARK 3 14 1.9600 - 1.9100 1.00 2642 131 0.1900 0.2275 REMARK 3 15 1.9100 - 1.8700 1.00 2656 137 0.2029 0.2142 REMARK 3 16 1.8700 - 1.8300 1.00 2605 145 0.2105 0.2623 REMARK 3 17 1.8300 - 1.7900 1.00 2621 149 0.2054 0.2253 REMARK 3 18 1.7900 - 1.7600 1.00 2581 162 0.2174 0.2583 REMARK 3 19 1.7600 - 1.7300 1.00 2655 119 0.2145 0.2373 REMARK 3 20 1.7300 - 1.7000 1.00 2599 135 0.2363 0.2308 REMARK 3 21 1.7000 - 1.6700 0.94 2470 136 0.2614 0.2834 REMARK 3 22 1.6700 - 1.6500 0.87 2300 130 0.2758 0.3103 REMARK 3 23 1.6500 - 1.6200 0.83 2119 116 0.3068 0.3698 REMARK 3 24 1.6200 - 1.6000 0.78 2064 115 0.3332 0.3822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2896 REMARK 3 ANGLE : 1.005 3941 REMARK 3 CHIRALITY : 0.055 441 REMARK 3 PLANARITY : 0.009 500 REMARK 3 DIHEDRAL : 15.291 1034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7613 3.9930 -12.4027 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2561 REMARK 3 T33: 0.3556 T12: 0.0502 REMARK 3 T13: 0.0817 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.3633 L22: 7.7908 REMARK 3 L33: 7.3728 L12: 2.2535 REMARK 3 L13: 2.4184 L23: 1.5350 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: -0.5218 S13: -0.0999 REMARK 3 S21: 0.6755 S22: -0.3121 S23: 0.9851 REMARK 3 S31: 0.1110 S32: -0.6127 S33: 0.1696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9999 14.5198 -24.1795 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1891 REMARK 3 T33: 0.1787 T12: -0.0013 REMARK 3 T13: -0.0009 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.6043 L22: 1.4460 REMARK 3 L33: 1.8737 L12: -0.2744 REMARK 3 L13: 0.6162 L23: -0.3859 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 0.1555 S13: 0.1597 REMARK 3 S21: 0.0777 S22: -0.0693 S23: -0.1287 REMARK 3 S31: -0.1296 S32: 0.2771 S33: 0.1066 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2051 -15.9264 -2.4069 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.1937 REMARK 3 T33: 0.2452 T12: 0.0339 REMARK 3 T13: 0.0449 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.7246 L22: 0.6979 REMARK 3 L33: 3.1204 L12: 0.1697 REMARK 3 L13: -0.9609 L23: -1.0972 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0735 S13: -0.0840 REMARK 3 S21: 0.0548 S22: -0.1248 S23: 0.0087 REMARK 3 S31: 0.1206 S32: 0.1289 S33: 0.1380 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8866 -12.7520 -24.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.3449 T22: 0.3235 REMARK 3 T33: 0.2776 T12: 0.1088 REMARK 3 T13: 0.0271 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.9292 L22: 1.4274 REMARK 3 L33: 0.6682 L12: -1.1592 REMARK 3 L13: 0.9224 L23: -1.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.2022 S12: 0.3078 S13: -0.0480 REMARK 3 S21: -0.3426 S22: -0.2895 S23: -0.0672 REMARK 3 S31: 0.3034 S32: 0.2304 S33: 0.0979 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0066 -11.9736 -19.1857 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2528 REMARK 3 T33: 0.1664 T12: 0.0695 REMARK 3 T13: 0.0245 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.4388 L22: 2.4321 REMARK 3 L33: 0.1189 L12: -0.9152 REMARK 3 L13: 0.3889 L23: -0.2235 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.1315 S13: -0.1256 REMARK 3 S21: -0.1374 S22: -0.1109 S23: 0.0809 REMARK 3 S31: 0.1240 S32: 0.0833 S33: 0.0577 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2022 -1.8497 -8.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.5040 T22: 0.4082 REMARK 3 T33: 0.5918 T12: 0.0332 REMARK 3 T13: 0.0726 T23: -0.0769 REMARK 3 L TENSOR REMARK 3 L11: 0.4521 L22: 2.0005 REMARK 3 L33: 2.5929 L12: 3.3046 REMARK 3 L13: -1.0788 L23: -7.9201 REMARK 3 S TENSOR REMARK 3 S11: 0.4120 S12: -0.0830 S13: 1.4895 REMARK 3 S21: 0.6367 S22: 0.0831 S23: 0.6066 REMARK 3 S31: -0.6267 S32: -0.1413 S33: -0.4578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 2.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3M ACONA PH5.3, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.85900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.85900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.52600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.99000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.52600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.99000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.85900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.52600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.99000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.85900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.52600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.99000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 748 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1003 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1005 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 95 REMARK 465 LEU A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 98 REMARK 465 GLN A 99 REMARK 465 LEU A 100 REMARK 465 GLU A 101 REMARK 465 GLU A 102 REMARK 465 TYR A 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB ILE A 293 O HOH A 605 1.55 REMARK 500 OD1 ASP A 269 O HOH A 601 1.82 REMARK 500 OE1 GLN A 366 O HOH A 602 2.13 REMARK 500 O HOH A 881 O HOH A 925 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 294 CD - CE - NZ ANGL. DEV. = 21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 229 -48.03 70.57 REMARK 500 GLU A 232 -27.27 93.87 REMARK 500 ALA A 266 58.40 -153.16 REMARK 500 GLU A 282 10.40 80.59 REMARK 500 LYS A 383 -131.02 50.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 302 O REMARK 620 2 TRP A 382 O 87.9 REMARK 620 3 THR A 385 OG1 106.4 156.8 REMARK 620 4 ACT A 504 OXT 167.8 83.4 79.4 REMARK 620 5 HOH A 834 O 91.2 90.5 107.0 97.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 373 OG1 REMARK 620 2 LYS A 383 O 110.2 REMARK 620 3 ACT A 504 OXT 136.5 100.9 REMARK 620 N 1 2 DBREF 8PJD A 94 445 UNP Q3UKX1 Q3UKX1_MOUSE 94 445 SEQADV 8PJD GLY A 90 UNP Q3UKX1 EXPRESSION TAG SEQADV 8PJD PRO A 91 UNP Q3UKX1 EXPRESSION TAG SEQADV 8PJD HIS A 92 UNP Q3UKX1 EXPRESSION TAG SEQADV 8PJD MET A 93 UNP Q3UKX1 EXPRESSION TAG SEQRES 1 A 356 GLY PRO HIS MET ASN HIS LEU GLY LYS GLN LEU GLU GLU SEQRES 2 A 356 TYR ASP PRO GLU ASP THR TRP GLN ASP GLU GLU TYR PHE SEQRES 3 A 356 ASP SER TYR GLY THR LEU LYS LEU HIS LEU GLU MET LEU SEQRES 4 A 356 ALA ASP GLN PRO ARG THR THR LYS TYR HIS SER VAL ILE SEQRES 5 A 356 LEU GLN ASN LYS GLU SER LEU LYS ASP LYS VAL ILE LEU SEQRES 6 A 356 ASP VAL GLY CYS GLY THR GLY ILE ILE SER LEU PHE CYS SEQRES 7 A 356 ALA HIS HIS ALA ARG PRO LYS ALA VAL TYR ALA VAL GLU SEQRES 8 A 356 ALA SER ASP MET ALA GLN HIS THR SER GLN LEU VAL LEU SEQRES 9 A 356 GLN ASN GLY PHE ALA ASP THR ILE THR VAL PHE GLN GLN SEQRES 10 A 356 LYS VAL GLU ASP VAL VAL LEU PRO GLU LYS VAL ASP VAL SEQRES 11 A 356 LEU VAL SER GLU TRP MET GLY THR CYS LEU LEU PHE GLU SEQRES 12 A 356 PHE MET ILE GLU SER ILE LEU TYR ALA ARG ASP THR TRP SEQRES 13 A 356 LEU LYS GLY ASP GLY ILE ILE TRP PRO THR THR ALA ALA SEQRES 14 A 356 LEU HIS LEU VAL PRO CYS SER ALA GLU LYS ASP TYR HIS SEQRES 15 A 356 SER LYS VAL LEU PHE TRP ASP ASN ALA TYR GLU PHE ASN SEQRES 16 A 356 LEU SER ALA LEU LYS SER LEU ALA ILE LYS GLU PHE PHE SEQRES 17 A 356 SER ARG PRO LYS SER ASN HIS ILE LEU LYS PRO GLU ASP SEQRES 18 A 356 CYS LEU SER GLU PRO CYS THR ILE LEU GLN LEU ASP MET SEQRES 19 A 356 ARG THR VAL GLN VAL PRO ASP LEU GLU THR MET ARG GLY SEQRES 20 A 356 GLU LEU ARG PHE ASP ILE GLN LYS ALA GLY THR LEU HIS SEQRES 21 A 356 GLY PHE THR ALA TRP PHE SER VAL TYR PHE GLN SER LEU SEQRES 22 A 356 GLU GLU GLY GLN PRO GLN GLN VAL LEU SER THR GLY PRO SEQRES 23 A 356 LEU HIS PRO THR THR HIS TRP LYS GLN THR LEU PHE MET SEQRES 24 A 356 MET ASP ASP PRO VAL PRO VAL HIS THR GLY ASP VAL VAL SEQRES 25 A 356 THR GLY SER VAL VAL LEU GLN ARG ASN PRO VAL TRP ARG SEQRES 26 A 356 ARG HIS MET SER VAL SER LEU SER TRP VAL VAL THR SER SEQRES 27 A 356 ALA LEU ASP PRO THR SER GLN ARG VAL GLY GLU LYS VAL SEQRES 28 A 356 PHE PRO ILE TRP ARG HET SAH A 501 45 HET ACT A 502 7 HET ACT A 503 7 HET ACT A 504 7 HET ACT A 505 7 HET NA A 506 1 HET NA A 507 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 ACT 4(C2 H3 O2 1-) FORMUL 7 NA 2(NA 1+) FORMUL 9 HOH *405(H2 O) HELIX 1 AA1 GLN A 110 THR A 120 1 11 HELIX 2 AA2 LEU A 121 ALA A 129 1 9 HELIX 3 AA3 ASP A 130 ASN A 144 1 15 HELIX 4 AA4 GLY A 161 ALA A 171 1 11 HELIX 5 AA5 ASP A 183 ASN A 195 1 13 HELIX 6 AA6 MET A 234 TRP A 245 1 12 HELIX 7 AA7 ALA A 266 VAL A 274 1 9 HELIX 8 AA8 LEU A 275 ASN A 279 5 5 HELIX 9 AA9 LEU A 285 ALA A 287 5 3 HELIX 10 AB1 LEU A 288 SER A 298 1 11 HELIX 11 AB2 LYS A 307 CYS A 311 5 5 HELIX 12 AB3 GLN A 327 LEU A 331 5 5 SHEET 1 AA1 5 ILE A 201 PHE A 204 0 SHEET 2 AA1 5 ALA A 175 VAL A 179 1 N ALA A 178 O THR A 202 SHEET 3 AA1 5 VAL A 152 VAL A 156 1 N ILE A 153 O TYR A 177 SHEET 4 AA1 5 VAL A 217 SER A 222 1 O VAL A 219 N LEU A 154 SHEET 5 AA1 5 LEU A 246 TRP A 253 1 O TRP A 253 N LEU A 220 SHEET 1 AA2 5 LYS A 301 HIS A 304 0 SHEET 2 AA2 5 GLN A 384 VAL A 395 -1 O LEU A 386 N LYS A 301 SHEET 3 AA2 5 GLY A 346 PHE A 359 -1 N PHE A 351 O PHE A 387 SHEET 4 AA2 5 THR A 256 CYS A 264 -1 N HIS A 260 O TRP A 354 SHEET 5 AA2 5 CYS A 316 ASP A 322 -1 O LEU A 321 N ALA A 257 SHEET 1 AA3 4 LYS A 301 HIS A 304 0 SHEET 2 AA3 4 GLN A 384 VAL A 395 -1 O LEU A 386 N LYS A 301 SHEET 3 AA3 4 GLY A 346 PHE A 359 -1 N PHE A 351 O PHE A 387 SHEET 4 AA3 4 GLN A 369 SER A 372 -1 O GLN A 369 N PHE A 359 SHEET 1 AA4 4 THR A 333 ASP A 341 0 SHEET 2 AA4 4 VAL A 400 ARG A 409 -1 O LEU A 407 N MET A 334 SHEET 3 AA4 4 MET A 417 THR A 426 -1 O THR A 426 N VAL A 400 SHEET 4 AA4 4 GLN A 434 ILE A 443 -1 O ILE A 443 N MET A 417 LINK O SER A 302 NA NA A 507 1555 1555 2.44 LINK OG1 THR A 373 NA NA A 506 1555 1555 2.78 LINK O TRP A 382 NA NA A 507 1555 1555 2.33 LINK O LYS A 383 NA NA A 506 1555 1555 2.61 LINK OG1 THR A 385 NA NA A 507 1555 1555 2.54 LINK OXT ACT A 504 NA NA A 506 1555 1555 2.54 LINK OXT ACT A 504 NA NA A 507 1555 1555 2.28 LINK NA NA A 507 O HOH A 834 1555 1555 2.48 CISPEP 1 TRP A 253 PRO A 254 0 -4.83 CISPEP 2 ILE A 443 TRP A 444 0 1.78 CRYST1 65.052 115.980 133.718 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007478 0.00000