HEADER IMMUNE SYSTEM 23-JUN-23 8PJF TITLE HUMAN LEUKOCYTE ANTIGEN CLASS II ALLOTYPE DR1 PRESENTING P11T->R TITLE 2 MODIFIED INFLUENZA A VIRUS HAEMAGGLUTININ (HA)306-318 PKYVKQNTLKLAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1 BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HUMAN LEUKOCYTE ANTIGEN DRB1,HLA-DRB1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DRB1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 18 ORGANISM_TAXID: 11320 KEYWDS HLA-II, HLA-DR, HLA-DR1, HUMAN LEUKOCYTE ANTIGEN, MAJOR KEYWDS 2 HISTOCOMPATIBILITY COMPLEX, MAJOR HISTOCOMPATIBILITY COMPLEX CLASS KEYWDS 3 2, INFLUENZA A VIRUS, FLU, HAEMAGGLUTININ, HA, INFECTION, VACCINE, KEYWDS 4 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.J.MACLACHLAN,A.WALL,A.L.GREENSHIELDS-WATSON,D.K.COLE,P.J.RIZKALLAH, AUTHOR 2 A.J.GODKIN REVDAT 2 06-NOV-24 8PJF 1 REMARK REVDAT 1 19-JUN-24 8PJF 0 JRNL AUTH S.HULIN-CURTIS,J.K.GEARY,B.J.MACLACHLAN,D.M.ALTMANN, JRNL AUTH 2 L.BAILLON,D.K.COLE,A.GREENSHIELDS-WATSON,S.J.HESKETH, JRNL AUTH 3 I.R.HUMPHREYS,I.M.JONES,S.N.LAUDER,G.H.MASON,K.SMART, JRNL AUTH 4 D.O.SCOURFIELD,J.SCOTT,K.SUKHOVA,R.J.STANTON,A.WALL, JRNL AUTH 5 P.J.RIZKALLAH,W.S.BARCLAY,A.GALLIMORE,A.GODKIN JRNL TITL A TARGETED SINGLE MUTATION IN INFLUENZA A VIRUS UNIVERSAL JRNL TITL 2 EPITOPE TRANSFORMS IMMUNOGENICITY AND PROTECTIVE IMMUNITY JRNL TITL 3 VIA CD4 + T CELL ACTIVATION. JRNL REF CELL REP V. 43 14259 2024 JRNL REFN ESSN 2211-1247 JRNL PMID 38819988 JRNL DOI 10.1016/J.CELREP.2024.114259 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 83382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.1400 - 4.6000 0.98 2841 143 0.1553 0.1749 REMARK 3 2 4.6000 - 3.6500 0.99 2699 141 0.1351 0.1443 REMARK 3 3 3.6500 - 3.1900 0.99 2713 135 0.1540 0.1919 REMARK 3 4 3.1900 - 2.9000 0.99 2636 161 0.1590 0.1871 REMARK 3 5 2.9000 - 2.6900 0.99 2643 147 0.1676 0.1799 REMARK 3 6 2.6900 - 2.5300 1.00 2680 134 0.1657 0.1599 REMARK 3 7 2.5300 - 2.4000 1.00 2639 164 0.1647 0.1970 REMARK 3 8 2.4000 - 2.3000 1.00 2682 119 0.1654 0.2013 REMARK 3 9 2.3000 - 2.2100 1.00 2625 160 0.1590 0.1871 REMARK 3 10 2.2100 - 2.1300 1.00 2628 145 0.1686 0.2061 REMARK 3 11 2.1300 - 2.0700 1.00 2654 140 0.1670 0.1966 REMARK 3 12 2.0700 - 2.0100 1.00 2579 157 0.1641 0.1733 REMARK 3 13 2.0100 - 1.9600 1.00 2662 141 0.1621 0.1957 REMARK 3 14 1.9600 - 1.9100 1.00 2615 135 0.1686 0.1942 REMARK 3 15 1.9100 - 1.8600 1.00 2655 149 0.1700 0.2059 REMARK 3 16 1.8600 - 1.8300 1.00 2595 130 0.1679 0.2134 REMARK 3 17 1.8300 - 1.7900 1.00 2649 161 0.1796 0.2114 REMARK 3 18 1.7900 - 1.7500 1.00 2578 151 0.1917 0.2413 REMARK 3 19 1.7500 - 1.7200 1.00 2631 128 0.2021 0.2357 REMARK 3 20 1.7200 - 1.6900 1.00 2620 126 0.2055 0.2387 REMARK 3 21 1.6900 - 1.6700 1.00 2599 148 0.2050 0.2243 REMARK 3 22 1.6700 - 1.6400 1.00 2623 150 0.2141 0.2524 REMARK 3 23 1.6400 - 1.6200 1.00 2607 132 0.2142 0.2603 REMARK 3 24 1.6200 - 1.5900 1.00 2623 124 0.2259 0.2414 REMARK 3 25 1.5900 - 1.5700 1.00 2651 141 0.2280 0.2589 REMARK 3 26 1.5700 - 1.5500 1.00 2570 137 0.2465 0.2911 REMARK 3 27 1.5500 - 1.5300 1.00 2622 116 0.2593 0.3339 REMARK 3 28 1.5300 - 1.5100 1.00 2638 129 0.2714 0.2702 REMARK 3 29 1.5100 - 1.5000 1.00 2586 134 0.2860 0.3228 REMARK 3 30 1.5000 - 1.4800 1.00 2623 138 0.3029 0.3507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.168 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3431 REMARK 3 ANGLE : 1.401 4656 REMARK 3 CHIRALITY : 0.122 491 REMARK 3 PLANARITY : 0.015 600 REMARK 3 DIHEDRAL : 7.585 473 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3117 19.1244 17.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1404 REMARK 3 T33: 0.1090 T12: 0.0041 REMARK 3 T13: -0.0098 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.2113 L22: 3.3626 REMARK 3 L33: 2.6223 L12: -0.0089 REMARK 3 L13: -0.7554 L23: 0.2412 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: -0.1366 S13: -0.0942 REMARK 3 S21: 0.0616 S22: 0.0893 S23: 0.0399 REMARK 3 S31: 0.0609 S32: -0.1480 S33: 0.0664 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1843 29.4738 24.3711 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1778 REMARK 3 T33: 0.1452 T12: 0.0227 REMARK 3 T13: -0.0419 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 6.9781 L22: 4.3134 REMARK 3 L33: 4.4824 L12: -2.1165 REMARK 3 L13: 1.1474 L23: -1.5983 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.2932 S13: 0.1053 REMARK 3 S21: 0.3229 S22: 0.1887 S23: -0.3464 REMARK 3 S31: -0.0899 S32: 0.3051 S33: -0.1413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4040 8.0183 16.1134 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1624 REMARK 3 T33: 0.2939 T12: 0.0179 REMARK 3 T13: 0.0530 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.5536 L22: 2.5615 REMARK 3 L33: 2.2705 L12: -0.7934 REMARK 3 L13: -0.9637 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: -0.4061 S12: -0.1683 S13: -0.4900 REMARK 3 S21: 0.2450 S22: 0.0383 S23: -0.0382 REMARK 3 S31: 0.4271 S32: 0.0530 S33: 0.3051 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8077 41.3985 0.5236 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.2134 REMARK 3 T33: 0.2447 T12: 0.0149 REMARK 3 T13: -0.0224 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.3607 L22: 3.5147 REMARK 3 L33: 4.9587 L12: 0.2514 REMARK 3 L13: -0.6562 L23: -1.4205 REMARK 3 S TENSOR REMARK 3 S11: 0.1691 S12: 0.3397 S13: 0.6085 REMARK 3 S21: 0.1197 S22: -0.1411 S23: 0.3894 REMARK 3 S31: -0.4764 S32: -0.0710 S33: -0.0608 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2603 30.2952 6.5221 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.1499 REMARK 3 T33: 0.1232 T12: 0.0012 REMARK 3 T13: -0.0218 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.6473 L22: 5.5954 REMARK 3 L33: 1.7286 L12: 0.3117 REMARK 3 L13: -0.5946 L23: -0.9960 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.0445 S13: 0.1648 REMARK 3 S21: -0.0032 S22: -0.0634 S23: -0.0575 REMARK 3 S31: -0.1265 S32: -0.0131 S33: 0.0492 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2027 33.9948 -2.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.2514 REMARK 3 T33: 0.1946 T12: 0.0115 REMARK 3 T13: 0.0315 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.7339 L22: 6.9841 REMARK 3 L33: 2.9042 L12: -1.1786 REMARK 3 L13: -0.2619 L23: -1.3379 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: 0.3968 S13: 0.3716 REMARK 3 S21: -0.4557 S22: 0.0285 S23: -0.2254 REMARK 3 S31: -0.2666 S32: -0.0835 S33: -0.0245 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4773 10.4386 19.0842 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.2073 REMARK 3 T33: 0.2893 T12: -0.0153 REMARK 3 T13: 0.1011 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.4410 L22: 1.7476 REMARK 3 L33: 0.9139 L12: 0.0325 REMARK 3 L13: -0.4286 L23: 0.2257 REMARK 3 S TENSOR REMARK 3 S11: -0.3011 S12: 0.0091 S13: -0.4569 REMARK 3 S21: 0.2520 S22: -0.0150 S23: 0.2811 REMARK 3 S31: 0.2726 S32: -0.1897 S33: 0.2801 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4948 43.4976 -2.0962 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1547 REMARK 3 T33: 0.1435 T12: 0.0013 REMARK 3 T13: -0.0021 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.6509 L22: 1.8229 REMARK 3 L33: 2.8675 L12: -0.6807 REMARK 3 L13: 1.0848 L23: -0.6010 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: 0.1634 S13: 0.0792 REMARK 3 S21: -0.1683 S22: -0.0007 S23: 0.0455 REMARK 3 S31: -0.0717 S32: 0.0982 S33: -0.0464 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8550 12.1404 27.3262 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.2549 REMARK 3 T33: 0.2642 T12: 0.0488 REMARK 3 T13: 0.1010 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 5.6296 L22: 4.0254 REMARK 3 L33: 5.1873 L12: -4.3959 REMARK 3 L13: -2.9953 L23: 3.8003 REMARK 3 S TENSOR REMARK 3 S11: -0.7128 S12: -0.3541 S13: -0.5504 REMARK 3 S21: 1.0781 S22: 0.4637 S23: -0.1052 REMARK 3 S31: 0.6700 S32: 0.2359 S33: 0.2079 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 54.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07970 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 7.0, 25 % PEG4000, 0.2 M REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.67500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 ILE A 1 REMARK 465 ALA A 182 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 419 O HOH A 426 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 50 OG1 THR B 106 1556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 158 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 2 78.96 56.73 REMARK 500 ASN B 19 71.83 54.71 REMARK 500 ASN B 33 -110.72 61.99 REMARK 500 THR B 90 -74.67 -124.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 94 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8PJF A 1 182 UNP P01903 DRA_HUMAN 26 207 DBREF 8PJF B 1 190 UNP P01911 DRB1_HUMAN 30 219 DBREF 8PJF C 1 13 UNP P03435 HEMA_I75A3 323 335 SEQADV 8PJF MET A -3 UNP P01903 INITIATING METHIONINE SEQADV 8PJF GLY A -2 UNP P01903 EXPRESSION TAG SEQADV 8PJF SER A -1 UNP P01903 EXPRESSION TAG SEQADV 8PJF MET A 0 UNP P01903 EXPRESSION TAG SEQADV 8PJF MET B -3 UNP P01911 INITIATING METHIONINE SEQADV 8PJF GLY B -2 UNP P01911 EXPRESSION TAG SEQADV 8PJF SER B -1 UNP P01911 EXPRESSION TAG SEQADV 8PJF MET B 0 UNP P01911 EXPRESSION TAG SEQADV 8PJF LEU B 11 UNP P01911 PRO 40 VARIANT SEQADV 8PJF PHE B 13 UNP P01911 ARG 42 VARIANT SEQADV 8PJF LEU B 26 UNP P01911 PHE 55 VARIANT SEQADV 8PJF GLU B 28 UNP P01911 ASP 57 VARIANT SEQADV 8PJF CYS B 30 UNP P01911 TYR 59 VARIANT SEQADV 8PJF ILE B 31 UNP P01911 PHE 60 VARIANT SEQADV 8PJF TYR B 47 UNP P01911 PHE 76 VARIANT SEQADV 8PJF LEU B 67 UNP P01911 ILE 96 VARIANT SEQADV 8PJF ARG B 71 UNP P01911 ALA 100 VARIANT SEQADV 8PJF GLY B 86 UNP P01911 VAL 115 VARIANT SEQADV 8PJF GLU B 96 UNP P01911 GLN 125 VARIANT SEQADV 8PJF ARG B 133 UNP P01911 LEU 162 VARIANT SEQADV 8PJF VAL B 142 UNP P01911 MET 171 VARIANT SEQADV 8PJF ARG C 13 UNP P03435 THR 335 ENGINEERED MUTATION SEQRES 1 A 186 MET GLY SER MET ILE LYS GLU GLU HIS VAL ILE ILE GLN SEQRES 2 A 186 ALA GLU PHE TYR LEU ASN PRO ASP GLN SER GLY GLU PHE SEQRES 3 A 186 MET PHE ASP PHE ASP GLY ASP GLU ILE PHE HIS VAL ASP SEQRES 4 A 186 MET ALA LYS LYS GLU THR VAL TRP ARG LEU GLU GLU PHE SEQRES 5 A 186 GLY ARG PHE ALA SER PHE GLU ALA GLN GLY ALA LEU ALA SEQRES 6 A 186 ASN ILE ALA VAL ASP LYS ALA ASN LEU GLU ILE MET THR SEQRES 7 A 186 LYS ARG SER ASN TYR THR PRO ILE THR ASN VAL PRO PRO SEQRES 8 A 186 GLU VAL THR VAL LEU THR ASN SER PRO VAL GLU LEU ARG SEQRES 9 A 186 GLU PRO ASN VAL LEU ILE CYS PHE ILE ASP LYS PHE THR SEQRES 10 A 186 PRO PRO VAL VAL ASN VAL THR TRP LEU ARG ASN GLY LYS SEQRES 11 A 186 PRO VAL THR THR GLY VAL SER GLU THR VAL PHE LEU PRO SEQRES 12 A 186 ARG GLU ASP HIS LEU PHE ARG LYS PHE HIS TYR LEU PRO SEQRES 13 A 186 PHE LEU PRO SER THR GLU ASP VAL TYR ASP CYS ARG VAL SEQRES 14 A 186 GLU HIS TRP GLY LEU ASP GLU PRO LEU LEU LYS HIS TRP SEQRES 15 A 186 GLU PHE ASP ALA SEQRES 1 B 194 MET GLY SER MET GLY ASP THR ARG PRO ARG PHE LEU TRP SEQRES 2 B 194 GLN LEU LYS PHE GLU CYS HIS PHE PHE ASN GLY THR GLU SEQRES 3 B 194 ARG VAL ARG LEU LEU GLU ARG CYS ILE TYR ASN GLN GLU SEQRES 4 B 194 GLU SER VAL ARG PHE ASP SER ASP VAL GLY GLU TYR ARG SEQRES 5 B 194 ALA VAL THR GLU LEU GLY ARG PRO ASP ALA GLU TYR TRP SEQRES 6 B 194 ASN SER GLN LYS ASP LEU LEU GLU GLN ARG ARG ALA ALA SEQRES 7 B 194 VAL ASP THR TYR CYS ARG HIS ASN TYR GLY VAL GLY GLU SEQRES 8 B 194 SER PHE THR VAL GLN ARG ARG VAL GLU PRO LYS VAL THR SEQRES 9 B 194 VAL TYR PRO SER LYS THR GLN PRO LEU GLN HIS HIS ASN SEQRES 10 B 194 LEU LEU VAL CYS SER VAL SER GLY PHE TYR PRO GLY SER SEQRES 11 B 194 ILE GLU VAL ARG TRP PHE ARG ASN GLY GLN GLU GLU LYS SEQRES 12 B 194 ALA GLY VAL VAL SER THR GLY LEU ILE GLN ASN GLY ASP SEQRES 13 B 194 TRP THR PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO SEQRES 14 B 194 ARG SER GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SEQRES 15 B 194 SER VAL THR SER PRO LEU THR VAL GLU TRP ARG ALA SEQRES 1 C 13 PRO LYS TYR VAL LYS GLN ASN THR LEU LYS LEU ALA ARG HET SO4 A 201 5 HET SO4 A 202 5 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET SO4 B 201 5 HET SO4 B 202 5 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET EDO B 208 4 HET EDO B 209 4 HET EDO B 210 4 HET EDO B 211 4 HET EDO B 212 4 HET EDO B 213 4 HET SO4 C 101 5 HET SO4 C 102 5 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 6(O4 S 2-) FORMUL 6 EDO 16(C2 H6 O2) FORMUL 26 HOH *306(H2 O) HELIX 1 AA1 GLU A 47 ALA A 52 1 6 HELIX 2 AA2 GLU A 55 SER A 77 1 23 HELIX 3 AA3 THR B 51 LEU B 53 5 3 HELIX 4 AA4 GLY B 54 SER B 63 1 10 HELIX 5 AA5 GLN B 64 TYR B 78 1 15 HELIX 6 AA6 TYR B 78 GLU B 87 1 10 HELIX 7 AA7 SER B 88 THR B 90 5 3 SHEET 1 AA1 8 GLU A 40 TRP A 43 0 SHEET 2 AA1 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 AA1 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 AA1 8 HIS A 5 ASN A 15 -1 N ALA A 10 O MET A 23 SHEET 5 AA1 8 PHE B 7 PHE B 18 -1 O CYS B 15 N ILE A 7 SHEET 6 AA1 8 ARG B 23 TYR B 32 -1 O LEU B 27 N GLU B 14 SHEET 7 AA1 8 GLU B 35 ASP B 41 -1 O PHE B 40 N GLU B 28 SHEET 8 AA1 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 AA2 4 GLU A 88 THR A 93 0 SHEET 2 AA2 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 AA2 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 AA2 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 AA3 4 GLU A 88 THR A 93 0 SHEET 2 AA3 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 AA3 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 AA3 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 AA4 4 LYS A 126 VAL A 128 0 SHEET 2 AA4 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 AA4 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 AA4 4 LEU A 174 GLU A 179 -1 O LEU A 174 N VAL A 165 SHEET 1 AA5 4 LYS B 98 PRO B 103 0 SHEET 2 AA5 4 ASN B 113 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 AA5 4 PHE B 155 THR B 163 -1 O LEU B 161 N LEU B 115 SHEET 4 AA5 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 AA6 4 LYS B 98 PRO B 103 0 SHEET 2 AA6 4 ASN B 113 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 AA6 4 PHE B 155 THR B 163 -1 O LEU B 161 N LEU B 115 SHEET 4 AA6 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 AA7 4 GLN B 136 GLU B 137 0 SHEET 2 AA7 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 AA7 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 AA7 4 LEU B 184 ARG B 189 -1 O TRP B 188 N TYR B 171 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.09 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.23 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 CISPEP 1 ASN A 15 PRO A 16 0 8.02 CISPEP 2 THR A 113 PRO A 114 0 -1.32 CISPEP 3 TYR B 123 PRO B 124 0 2.74 CRYST1 91.350 134.430 40.250 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024845 0.00000