data_8PJL # _entry.id 8PJL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PJL pdb_00008pjl 10.2210/pdb8pjl/pdb WWPDB D_1292131440 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PJL _pdbx_database_status.recvd_initial_deposition_date 2023-06-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email james.hall@reading.ac.uk _pdbx_contact_author.name_first James _pdbx_contact_author.name_last Hall _pdbx_contact_author.name_mi P _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3716-4378 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Abdullrahman, A.' 1 0000-0002-4745-6852 'Cardin, C.J.' 2 0000-0002-2556-9995 'Hall, J.P.' 3 0000-0003-3716-4378 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'DNA duplex with triplets bases in minor groove' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abdullrahman, A.' 1 0000-0002-4745-6852 primary 'Cardin, C.J.' 2 0000-0002-2556-9995 primary 'Hall, J.P.' 3 0000-0003-3716-4378 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3') ; 4206.740 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3') ; 4353.854 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 water nat water 18.015 92 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DC)(DG)(DT)(DC)(DT)(DC)(DT)(DC)(DA)(DG)(DT)(DC)' TACGTCTCTCAGTC A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DC)(DT)(DG)(DA)(DG)(DA)(DG)(DA)(DC)(DG)(DT)(DA)' GACTGAGAGACGTA B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DT n 1 6 DC n 1 7 DT n 1 8 DC n 1 9 DT n 1 10 DC n 1 11 DA n 1 12 DG n 1 13 DT n 1 14 DC n 2 1 DG n 2 2 DA n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DC n 2 12 DG n 2 13 DT n 2 14 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 14 'synthetic construct' ? 32630 ? 2 1 sample 1 14 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DC 14 14 14 DC DC A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DA 2 2 2 DA DA B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DG 9 9 9 DG DG B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DT 13 13 13 DT DT B . n B 2 14 DA 14 14 14 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 1 MG MG A . D 3 MG 1 102 2 MG MG A . E 3 MG 1 103 3 MG MG A . F 4 K 1 104 5 K K A . G 4 K 1 105 6 K K A . H 3 MG 1 101 4 MG MG B . I 5 HOH 1 201 179 HOH HOH A . I 5 HOH 2 202 28 HOH HOH A . I 5 HOH 3 203 143 HOH HOH A . I 5 HOH 4 204 30 HOH HOH A . I 5 HOH 5 205 90 HOH HOH A . I 5 HOH 6 206 63 HOH HOH A . I 5 HOH 7 207 106 HOH HOH A . I 5 HOH 8 208 177 HOH HOH A . I 5 HOH 9 209 174 HOH HOH A . I 5 HOH 10 210 20 HOH HOH A . I 5 HOH 11 211 8 HOH HOH A . I 5 HOH 12 212 188 HOH HOH A . I 5 HOH 13 213 62 HOH HOH A . I 5 HOH 14 214 101 HOH HOH A . I 5 HOH 15 215 186 HOH HOH A . I 5 HOH 16 216 2 HOH HOH A . I 5 HOH 17 217 7 HOH HOH A . I 5 HOH 18 218 161 HOH HOH A . I 5 HOH 19 219 81 HOH HOH A . I 5 HOH 20 220 17 HOH HOH A . I 5 HOH 21 221 27 HOH HOH A . I 5 HOH 22 222 21 HOH HOH A . I 5 HOH 23 223 24 HOH HOH A . I 5 HOH 24 224 73 HOH HOH A . I 5 HOH 25 225 10 HOH HOH A . I 5 HOH 26 226 64 HOH HOH A . I 5 HOH 27 227 118 HOH HOH A . I 5 HOH 28 228 182 HOH HOH A . I 5 HOH 29 229 82 HOH HOH A . I 5 HOH 30 230 95 HOH HOH A . I 5 HOH 31 231 97 HOH HOH A . I 5 HOH 32 232 190 HOH HOH A . I 5 HOH 33 233 66 HOH HOH A . I 5 HOH 34 234 163 HOH HOH A . I 5 HOH 35 235 98 HOH HOH A . I 5 HOH 36 236 147 HOH HOH A . I 5 HOH 37 237 155 HOH HOH A . I 5 HOH 38 238 22 HOH HOH A . I 5 HOH 39 239 72 HOH HOH A . I 5 HOH 40 240 142 HOH HOH A . I 5 HOH 41 241 137 HOH HOH A . I 5 HOH 42 242 150 HOH HOH A . I 5 HOH 43 243 148 HOH HOH A . I 5 HOH 44 244 74 HOH HOH A . I 5 HOH 45 245 92 HOH HOH A . I 5 HOH 46 246 165 HOH HOH A . I 5 HOH 47 247 172 HOH HOH A . I 5 HOH 48 248 121 HOH HOH A . I 5 HOH 49 249 178 HOH HOH A . I 5 HOH 50 250 112 HOH HOH A . I 5 HOH 51 251 180 HOH HOH A . I 5 HOH 52 252 140 HOH HOH A . I 5 HOH 53 253 124 HOH HOH A . J 5 HOH 1 201 94 HOH HOH B . J 5 HOH 2 202 6 HOH HOH B . J 5 HOH 3 203 68 HOH HOH B . J 5 HOH 4 204 71 HOH HOH B . J 5 HOH 5 205 168 HOH HOH B . J 5 HOH 6 206 159 HOH HOH B . J 5 HOH 7 207 167 HOH HOH B . J 5 HOH 8 208 170 HOH HOH B . J 5 HOH 9 209 105 HOH HOH B . J 5 HOH 10 210 160 HOH HOH B . J 5 HOH 11 211 169 HOH HOH B . J 5 HOH 12 212 91 HOH HOH B . J 5 HOH 13 213 152 HOH HOH B . J 5 HOH 14 214 157 HOH HOH B . J 5 HOH 15 215 78 HOH HOH B . J 5 HOH 16 216 166 HOH HOH B . J 5 HOH 17 217 164 HOH HOH B . J 5 HOH 18 218 23 HOH HOH B . J 5 HOH 19 219 113 HOH HOH B . J 5 HOH 20 220 136 HOH HOH B . J 5 HOH 21 221 5 HOH HOH B . J 5 HOH 22 222 19 HOH HOH B . J 5 HOH 23 223 100 HOH HOH B . J 5 HOH 24 224 114 HOH HOH B . J 5 HOH 25 225 189 HOH HOH B . J 5 HOH 26 226 12 HOH HOH B . J 5 HOH 27 227 93 HOH HOH B . J 5 HOH 28 228 187 HOH HOH B . J 5 HOH 29 229 176 HOH HOH B . J 5 HOH 30 230 16 HOH HOH B . J 5 HOH 31 231 162 HOH HOH B . J 5 HOH 32 232 184 HOH HOH B . J 5 HOH 33 233 181 HOH HOH B . J 5 HOH 34 234 185 HOH HOH B . J 5 HOH 35 235 14 HOH HOH B . J 5 HOH 36 236 149 HOH HOH B . J 5 HOH 37 237 144 HOH HOH B . J 5 HOH 38 238 183 HOH HOH B . J 5 HOH 39 239 119 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DG 1 ? "O5'" ? B DG 1 "O5'" 2 1 Y 1 B DG 1 ? "C5'" ? B DG 1 "C5'" 3 1 Y 1 B DG 1 ? "C4'" ? B DG 1 "C4'" 4 1 Y 1 B DG 1 ? "O4'" ? B DG 1 "O4'" 5 1 Y 1 B DG 1 ? "C3'" ? B DG 1 "C3'" 6 1 Y 1 B DG 1 ? "C2'" ? B DG 1 "C2'" 7 1 Y 1 B DG 1 ? "C1'" ? B DG 1 "C1'" 8 1 Y 1 B DG 1 ? N9 ? B DG 1 N9 9 1 Y 1 B DG 1 ? C8 ? B DG 1 C8 10 1 Y 1 B DG 1 ? N7 ? B DG 1 N7 11 1 Y 1 B DG 1 ? C5 ? B DG 1 C5 12 1 Y 1 B DG 1 ? C6 ? B DG 1 C6 13 1 Y 1 B DG 1 ? O6 ? B DG 1 O6 14 1 Y 1 B DG 1 ? N1 ? B DG 1 N1 15 1 Y 1 B DG 1 ? C2 ? B DG 1 C2 16 1 Y 1 B DG 1 ? N2 ? B DG 1 N2 17 1 Y 1 B DG 1 ? N3 ? B DG 1 N3 18 1 Y 1 B DG 1 ? C4 ? B DG 1 C4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8PJL _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.833 _cell.length_a_esd ? _cell.length_b 39.833 _cell.length_b_esd ? _cell.length_c 58.964 _cell.length_c_esd ? _cell.volume 93555.511 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8PJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PJL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;A solution containing 20mM Na-cacodylate, 10 mM MgCl2, 0.6mM DNA was mixed in a 1:1 ratio with a solution containing 56.25% v/v (+/-)-2-methyl-2,4-pentanediol, 30 mM Na-cacodylate pH 6.0, 30 mM Na-cacodylate 3H2O, 12mM SrCl2 6H2O. Total drop volume was 400nL ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 278 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-06-16 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'SEALED TUBE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU PhotonJet-S' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 26.46 _reflns.entry_id 8PJL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 19.65 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6283 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.071 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.15 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 462 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.79 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.10 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 33.22 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8PJL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 18.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6244 _refine.ls_number_reflns_R_free 326 _refine.ls_number_reflns_R_work 5918 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.71 _refine.ls_percent_reflns_R_free 5.22 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1929 _refine.ls_R_factor_R_free 0.2353 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1907 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.0404 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1640 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 18.87 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 648 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 550 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0041 ? 665 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6321 ? 1026 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0395 ? 115 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0032 ? 29 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 33.0283 ? 287 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.00 2.52 . . 185 2925 99.97 . . . . 0.2558 . . . . . . . . . . . 0.2710 'X-RAY DIFFRACTION' 2.52 18.87 . . 141 2993 99.46 . . . . 0.1667 . . . . . . . . . . . 0.2170 # _struct.entry_id 8PJL _struct.title 'DNA duplex forming base triplets in minor groove' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PJL _struct_keywords.text 'DNA, triplets, duplex' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 5 ? J N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8PJL 8PJL ? 1 ? 1 2 PDB 8PJL 8PJL ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8PJL A 1 ? 14 ? 8PJL 1 ? 14 ? 1 14 2 2 8PJL B 1 ? 14 ? 8PJL 1 ? 14 ? 1 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 1 O2 ? ? ? 1_555 E MG . MG ? ? A DT 1 A MG 103 1_555 ? ? ? ? ? ? ? 2.460 ? ? metalc2 metalc ? ? A DT 5 O2 ? ? ? 1_555 E MG . MG ? ? A DT 5 A MG 103 3_555 ? ? ? ? ? ? ? 2.370 ? ? metalc3 metalc ? ? A DT 7 OP2 ? ? ? 1_555 D MG . MG ? ? A DT 7 A MG 102 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc4 metalc ? ? A DC 14 O2 ? ? ? 1_555 F K . K ? ? A DC 14 A K 104 1_455 ? ? ? ? ? ? ? 2.653 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 A HOH 204 4_554 ? ? ? ? ? ? ? 2.280 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 A HOH 206 1_555 ? ? ? ? ? ? ? 2.236 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 A HOH 210 4_554 ? ? ? ? ? ? ? 2.208 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 A HOH 213 4_554 ? ? ? ? ? ? ? 1.975 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 A HOH 216 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 101 A HOH 245 4_554 ? ? ? ? ? ? ? 2.280 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 102 A HOH 224 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 102 A HOH 230 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 B HOH 201 3_555 ? ? ? ? ? ? ? 2.312 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 B HOH 206 3_555 ? ? ? ? ? ? ? 2.216 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 102 B HOH 209 3_555 ? ? ? ? ? ? ? 2.027 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 103 A HOH 214 4_554 ? ? ? ? ? ? ? 2.357 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 3_555 B DC 11 O2 ? ? A MG 103 B DC 11 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 103 B HOH 211 4_554 ? ? ? ? ? ? ? 2.454 ? ? metalc19 metalc ? ? F K . K ? ? ? 1_555 I HOH . O ? ? A K 104 A HOH 205 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc20 metalc ? ? F K . K ? ? ? 1_555 I HOH . O ? ? A K 104 A HOH 208 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc21 metalc ? ? F K . K ? ? ? 1_555 I HOH . O ? ? A K 104 A HOH 234 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc22 metalc ? ? F K . K ? ? ? 1_555 I HOH . O ? ? A K 104 A HOH 249 1_655 ? ? ? ? ? ? ? 2.800 ? ? metalc23 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? A K 104 B HOH 217 1_555 ? ? ? ? ? ? ? 2.821 ? ? metalc24 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? A K 104 B HOH 231 1_555 ? ? ? ? ? ? ? 3.060 ? ? metalc25 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? A K 105 A HOH 201 1_555 ? ? ? ? ? ? ? 2.982 ? ? metalc26 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? A K 105 A HOH 203 1_555 ? ? ? ? ? ? ? 2.890 ? ? metalc27 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? A K 105 A HOH 229 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc28 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? A K 105 A HOH 239 1_555 ? ? ? ? ? ? ? 2.786 ? ? metalc29 metalc ? ? B DA 10 OP1 ? ? ? 1_555 H MG . MG ? ? B DA 10 B MG 101 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc30 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 101 B HOH 229 1_555 ? ? ? ? ? ? ? 2.954 ? ? hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 2 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 2 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 3 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 4 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 4 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 4 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 5 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 5 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 6 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 7 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 7 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 7 N1 A ? A DC 8 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 7 N1 B ? A DC 8 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 7 O6 A ? A DC 8 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 7 O6 B ? A DC 8 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 7 N2 A ? A DC 8 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 7 N2 B ? A DC 8 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 6 N1 A ? A DT 9 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 6 N1 B ? A DT 9 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 6 N6 A ? A DT 9 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 6 N6 B ? A DT 9 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 11 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 11 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 12 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 12 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 12 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 13 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 13 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A DT 1 ? A DT 1 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O2 ? A DT 5 ? A DT 5 ? 1_555 101.0 ? 2 O2 ? A DT 1 ? A DT 1 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 214 ? 4_554 91.9 ? 3 O2 ? A DT 5 ? A DT 5 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 214 ? 4_554 26.3 ? 4 O2 ? A DT 1 ? A DT 1 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O2 ? B DC 11 ? B DC 11 ? 1_555 87.7 ? 5 O2 ? A DT 5 ? A DT 5 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O2 ? B DC 11 ? B DC 11 ? 1_555 13.3 ? 6 O ? I HOH . ? A HOH 214 ? 4_554 MG ? E MG . ? A MG 103 ? 1_555 O2 ? B DC 11 ? B DC 11 ? 1_555 24.3 ? 7 O2 ? A DT 1 ? A DT 1 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? B HOH 211 ? 4_554 106.5 ? 8 O2 ? A DT 5 ? A DT 5 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? B HOH 211 ? 4_554 104.7 ? 9 O ? I HOH . ? A HOH 214 ? 4_554 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? B HOH 211 ? 4_554 83.9 ? 10 O2 ? B DC 11 ? B DC 11 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? J HOH . ? B HOH 211 ? 4_554 108.0 ? 11 OP2 ? A DT 7 ? A DT 7 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? A HOH 224 ? 1_555 81.3 ? 12 OP2 ? A DT 7 ? A DT 7 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? A HOH 230 ? 1_555 92.2 ? 13 O ? I HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? A HOH 230 ? 1_555 90.8 ? 14 OP2 ? A DT 7 ? A DT 7 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 201 ? 3_555 84.2 ? 15 O ? I HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 201 ? 3_555 163.5 ? 16 O ? I HOH . ? A HOH 230 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 201 ? 3_555 81.9 ? 17 OP2 ? A DT 7 ? A DT 7 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 206 ? 3_555 90.0 ? 18 O ? I HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 206 ? 3_555 88.6 ? 19 O ? I HOH . ? A HOH 230 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 206 ? 3_555 177.5 ? 20 O ? J HOH . ? B HOH 201 ? 3_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 206 ? 3_555 99.3 ? 21 OP2 ? A DT 7 ? A DT 7 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 3_555 176.1 ? 22 O ? I HOH . ? A HOH 224 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 3_555 95.9 ? 23 O ? I HOH . ? A HOH 230 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 3_555 85.1 ? 24 O ? J HOH . ? B HOH 201 ? 3_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 3_555 98.1 ? 25 O ? J HOH . ? B HOH 206 ? 3_555 MG ? D MG . ? A MG 102 ? 1_555 O ? J HOH . ? B HOH 209 ? 3_555 92.7 ? 26 O2 ? A DC 14 ? A DC 14 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 205 ? 1_555 10.5 ? 27 O2 ? A DC 14 ? A DC 14 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 208 ? 1_555 7.8 ? 28 O ? I HOH . ? A HOH 205 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 208 ? 1_555 3.3 ? 29 O2 ? A DC 14 ? A DC 14 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 234 ? 1_555 7.8 ? 30 O ? I HOH . ? A HOH 205 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 234 ? 1_555 5.4 ? 31 O ? I HOH . ? A HOH 208 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 234 ? 1_555 5.6 ? 32 O2 ? A DC 14 ? A DC 14 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 249 ? 1_655 12.1 ? 33 O ? I HOH . ? A HOH 205 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 249 ? 1_655 5.8 ? 34 O ? I HOH . ? A HOH 208 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 249 ? 1_655 7.9 ? 35 O ? I HOH . ? A HOH 234 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? I HOH . ? A HOH 249 ? 1_655 4.4 ? 36 O2 ? A DC 14 ? A DC 14 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 217 ? 1_555 12.9 ? 37 O ? I HOH . ? A HOH 205 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 217 ? 1_555 2.5 ? 38 O ? I HOH . ? A HOH 208 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 217 ? 1_555 5.3 ? 39 O ? I HOH . ? A HOH 234 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 217 ? 1_555 7.7 ? 40 O ? I HOH . ? A HOH 249 ? 1_655 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 217 ? 1_555 6.9 ? 41 O2 ? A DC 14 ? A DC 14 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 231 ? 1_555 14.4 ? 42 O ? I HOH . ? A HOH 205 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 231 ? 1_555 4.3 ? 43 O ? I HOH . ? A HOH 208 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 231 ? 1_555 7.5 ? 44 O ? I HOH . ? A HOH 234 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 231 ? 1_555 7.8 ? 45 O ? I HOH . ? A HOH 249 ? 1_655 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 231 ? 1_555 5.3 ? 46 O ? J HOH . ? B HOH 217 ? 1_555 K ? F K . ? A K 104 ? 1_455 O ? J HOH . ? B HOH 231 ? 1_555 3.0 ? 47 O ? I HOH . ? A HOH 204 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 96.8 ? 48 O ? I HOH . ? A HOH 204 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 210 ? 4_554 86.8 ? 49 O ? I HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 210 ? 4_554 175.8 ? 50 O ? I HOH . ? A HOH 204 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 213 ? 4_554 83.0 ? 51 O ? I HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 213 ? 4_554 84.6 ? 52 O ? I HOH . ? A HOH 210 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 213 ? 4_554 97.9 ? 53 O ? I HOH . ? A HOH 204 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 92.7 ? 54 O ? I HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 95.5 ? 55 O ? I HOH . ? A HOH 210 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 82.2 ? 56 O ? I HOH . ? A HOH 213 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 175.6 ? 57 O ? I HOH . ? A HOH 204 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 245 ? 4_554 175.2 ? 58 O ? I HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 245 ? 4_554 84.1 ? 59 O ? I HOH . ? A HOH 210 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 245 ? 4_554 92.5 ? 60 O ? I HOH . ? A HOH 213 ? 4_554 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 245 ? 4_554 92.4 ? 61 O ? I HOH . ? A HOH 216 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 245 ? 4_554 91.9 ? 62 O ? I HOH . ? A HOH 201 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 51.9 ? 63 O ? I HOH . ? A HOH 201 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? I HOH . ? A HOH 229 ? 1_555 67.4 ? 64 O ? I HOH . ? A HOH 203 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? I HOH . ? A HOH 229 ? 1_555 67.3 ? 65 O ? I HOH . ? A HOH 201 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? I HOH . ? A HOH 239 ? 1_555 103.9 ? 66 O ? I HOH . ? A HOH 203 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? I HOH . ? A HOH 239 ? 1_555 61.0 ? 67 O ? I HOH . ? A HOH 229 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? I HOH . ? A HOH 239 ? 1_555 56.5 ? 68 OP1 ? B DA 10 ? B DA 10 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? J HOH . ? B HOH 229 ? 1_555 98.6 ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z+1/4 3 y,-x,z+3/4 4 -x,-y,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -7.82195441689 1.51896492582 -7.23453794859 0.138216973361 ? 0.0213069742006 ? 0.016160468849 ? 0.197216675023 ? 0.0192761465879 ? 0.139312294602 ? 4.03427630301 ? -0.362263189435 ? 0.382838618826 ? 1.40009728067 ? 0.396809943534 ? 0.296471051355 ? -0.082491820214 ? 0.0816106821225 ? -0.102371373213 ? 0.00771341062821 ? 0.00228832593848 ? 0.223438927078 ? 0.000306571461051 ? -0.259483077441 ? 0.078026323696 ? 2 'X-RAY DIFFRACTION' ? refined -7.62018705411 2.9343838111 -5.82556172769 0.172632647556 ? 0.0020682578678 ? 0.0184347704779 ? 0.239943994341 ? 0.0373747878559 ? 0.146165222309 ? 7.66172528761 ? 0.258483186109 ? -1.06322320165 ? 2.69751702716 ? 0.798825165634 ? 1.25462150389 ? -0.176716551179 ? -0.318997477944 ? -0.594356715674 ? 0.0513374217161 ? -0.0241288236933 ? 0.200033565717 ? 0.0257600128794 ? -0.276754812273 ? 0.145907896344 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 14 ? ? ;chain 'A' and (resid 1 through 14 ) ; 2 'X-RAY DIFFRACTION' 2 B ? B 1 ? B ? B 14 ? ? ;chain 'B' and (resid 1 through 14 ) ; # _pdbx_entry_details.entry_id 8PJL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 253 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 8.83 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 K K K N N 147 MG MG MG N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8PJL 'double helix' 8PJL 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 13 1_555 -0.099 -0.097 0.334 4.782 -3.948 2.045 1 A_DA2:DT13_B A 2 ? B 13 ? 20 1 1 A DC 3 1_555 B DG 12 1_555 -0.014 -0.210 0.426 -5.812 -17.224 0.718 2 A_DC3:DG12_B A 3 ? B 12 ? 19 1 1 A DG 4 1_555 B DC 11 1_555 -0.120 -0.158 0.324 11.661 -13.569 1.720 3 A_DG4:DC11_B A 4 ? B 11 ? 19 1 1 A DT 5 1_555 B DA 10 1_555 0.222 -0.090 -0.262 11.674 -13.328 5.226 4 A_DT5:DA10_B A 5 ? B 10 ? 20 1 1 A DC 6 1_555 B DG 9 1_555 0.231 -0.035 0.195 0.003 -17.985 3.350 5 A_DC6:DG9_B A 6 ? B 9 ? 19 1 1 A DT 7 1_555 B DA 8 1_555 -0.052 -0.119 0.241 1.346 -10.959 -2.566 6 A_DT7:DA8_B A 7 ? B 8 ? 20 1 1 A DC 8 1_555 B DG 7 1_555 0.016 -0.092 0.633 -9.711 -16.760 -1.161 7 A_DC8:DG7_B A 8 ? B 7 ? 19 1 1 A DT 9 1_555 B DA 6 1_555 -0.752 0.032 0.963 -21.217 -21.712 -3.934 8 A_DT9:DA6_B A 9 ? B 6 ? 20 1 1 A DC 10 1_555 B DG 5 1_555 0.492 -0.331 -0.041 -6.669 -3.978 3.492 9 A_DC10:DG5_B A 10 ? B 5 ? 19 1 1 A DA 11 1_555 B DT 4 1_555 0.607 -0.186 0.361 2.544 -19.261 -0.782 10 A_DA11:DT4_B A 11 ? B 4 ? 20 1 1 A DG 12 1_555 B DC 3 1_555 0.066 -0.225 0.388 7.347 -22.160 3.342 11 A_DG12:DC3_B A 12 ? B 3 ? 19 1 1 A DT 13 1_555 B DA 2 1_555 -0.011 -0.184 0.093 -2.733 -4.823 1.357 12 A_DT13:DA2_B A 13 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 13 1_555 A DC 3 1_555 B DG 12 1_555 -1.154 -0.305 3.624 -1.899 -14.474 33.113 1.844 1.556 3.510 -23.997 3.149 36.105 1 AA_DA2DC3:DG12DT13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A DC 3 1_555 B DG 12 1_555 A DG 4 1_555 B DC 11 1_555 0.129 0.309 2.946 2.318 9.358 32.172 -0.873 0.126 2.921 16.431 -4.069 33.549 2 AA_DC3DG4:DC11DG12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A DG 4 1_555 B DC 11 1_555 A DT 5 1_555 B DA 10 1_555 0.598 -0.575 3.245 5.376 -0.084 33.975 -0.960 -0.166 3.299 -0.143 -9.129 34.385 3 AA_DG4DT5:DA10DC11_BB A 4 ? B 11 ? A 5 ? B 10 ? 1 A DT 5 1_555 B DA 10 1_555 A DC 6 1_555 B DG 9 1_555 0.041 -0.129 3.560 -2.794 -3.001 38.641 0.204 -0.433 3.548 -4.519 4.208 38.850 4 AA_DT5DC6:DG9DA10_BB A 5 ? B 10 ? A 6 ? B 9 ? 1 A DC 6 1_555 B DG 9 1_555 A DT 7 1_555 B DA 8 1_555 -0.836 -0.756 3.341 0.435 1.607 32.081 -1.658 1.589 3.289 2.906 -0.787 32.123 5 AA_DC6DT7:DA8DG9_BB A 6 ? B 9 ? A 7 ? B 8 ? 1 A DT 7 1_555 B DA 8 1_555 A DC 8 1_555 B DG 7 1_555 -0.171 -0.425 3.539 -3.664 -7.108 41.778 0.203 -0.170 3.564 -9.858 5.081 42.503 6 AA_DT7DC8:DG7DA8_BB A 7 ? B 8 ? A 8 ? B 7 ? 1 A DC 8 1_555 B DG 7 1_555 A DT 9 1_555 B DA 6 1_555 -0.394 0.052 3.591 -1.188 -4.190 35.868 0.734 0.450 3.574 -6.773 1.920 36.123 7 AA_DC8DT9:DA6DG7_BB A 8 ? B 7 ? A 9 ? B 6 ? 1 A DT 9 1_555 B DA 6 1_555 A DC 10 1_555 B DG 5 1_555 0.919 1.375 3.022 7.481 -1.041 38.375 2.173 -0.523 3.103 -1.565 -11.247 39.084 8 AA_DT9DC10:DG5DA6_BB A 9 ? B 6 ? A 10 ? B 5 ? 1 A DC 10 1_555 B DG 5 1_555 A DA 11 1_555 B DT 4 1_555 -0.749 1.917 3.224 -6.630 -1.919 41.563 2.864 0.365 3.213 -2.683 9.265 42.107 9 AA_DC10DA11:DT4DG5_BB A 10 ? B 5 ? A 11 ? B 4 ? 1 A DA 11 1_555 B DT 4 1_555 A DG 12 1_555 B DC 3 1_555 0.668 -0.253 3.219 -0.828 9.889 29.636 -2.295 -1.395 2.964 18.684 1.564 31.218 10 AA_DA11DG12:DC3DT4_BB A 11 ? B 4 ? A 12 ? B 3 ? 1 A DG 12 1_555 B DC 3 1_555 A DT 13 1_555 B DA 2 1_555 1.069 -0.538 3.625 2.770 -14.264 32.496 1.538 -1.283 3.617 -24.047 -4.670 35.516 11 AA_DG12DT13:DA2DC3_BB A 12 ? B 3 ? A 13 ? B 2 ? # _pdbx_audit_support.funding_organization 'H2020 Marie Curie Actions of the European Commission' _pdbx_audit_support.country 'European Union' _pdbx_audit_support.grant_number H2020-MSCA-ITN-2019-861381 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id MG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id MG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BSE _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 41' _space_group.name_Hall 'P 4w' _space_group.IT_number 76 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 8PJL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.025105 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025105 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016960 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_