HEADER ALLERGEN 26-JUN-23 8PKC TITLE STRUCTURE OF API M1 IN COMPLEX WITH THE AM1-4 NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BVPLA2,ALLERGEN API M I,PHOSPHATIDYLCHOLINE 2-ACYLHYDROLASE; COMPND 5 EC: 3.1.1.4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AM1-4 NANOBODY; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEY BEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 7 ORGANISM_TAXID: 9844; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALLERGEN, ANTIBODY, NANOBODY EXPDTA X-RAY DIFFRACTION AUTHOR J.B.AAGAARD,R.GANDINI,E.SPILLNER,M.MIEHE REVDAT 1 08-MAY-24 8PKC 0 JRNL AUTH J.B.AAGAARD JRNL TITL NANOBODY-BASED IGG FORMATS AS BLOCKING ANTIBODIES OF THE JRNL TITL 2 MAJOR HONEYBEE VENOM ALLERGEN API M 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8000 - 7.0100 1.00 1367 152 0.2364 0.2635 REMARK 3 2 7.0000 - 5.5600 1.00 1274 142 0.2900 0.3101 REMARK 3 3 5.5600 - 4.8600 1.00 1258 139 0.2656 0.3282 REMARK 3 4 4.8600 - 4.4200 1.00 1238 138 0.2452 0.2507 REMARK 3 5 4.4200 - 4.1000 1.00 1237 138 0.2694 0.3405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.441 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.845 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4156 REMARK 3 ANGLE : 0.802 5600 REMARK 3 CHIRALITY : 0.062 586 REMARK 3 PLANARITY : 0.006 724 REMARK 3 DIHEDRAL : 12.640 1506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4810 45.3702 -33.9548 REMARK 3 T TENSOR REMARK 3 T11: 0.0 T22: 0.0 REMARK 3 T33: 0.0 T12: 0.0 REMARK 3 T13: 0.0 T23: 0.0 REMARK 3 L TENSOR REMARK 3 L11: 0.0 L22: 0.0 REMARK 3 L33: 0.0 L12: 0.0 REMARK 3 L13: 0.0 L23: 0.0 REMARK 3 S TENSOR REMARK 3 S11: 0.0 S12: 0.0 S13: 0.0 REMARK 3 S21: 0.0 S22: 0.0 S23: 0.0 REMARK 3 S31: 0.0 S32: 0.0 S33: 0.0 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5763 28.0634 -30.6027 REMARK 3 T TENSOR REMARK 3 T11: 0.0 T22: 0.0 REMARK 3 T33: 0.0 T12: 0.0 REMARK 3 T13: 0.0 T23: 0.0 REMARK 3 L TENSOR REMARK 3 L11: 0.0 L22: 0.0 REMARK 3 L33: 0.0 L12: 0.0 REMARK 3 L13: 0.0 L23: 0.0 REMARK 3 S TENSOR REMARK 3 S11: 0.0 S12: 0.0 S13: 0.0 REMARK 3 S21: 0.0 S22: 0.0 S23: 0.0 REMARK 3 S31: 0.0 S32: 0.0 S33: 0.0 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7181 55.3727 -60.7379 REMARK 3 T TENSOR REMARK 3 T11: 0.0 T22: 0.0 REMARK 3 T33: 0.0 T12: 0.0 REMARK 3 T13: 0.0 T23: 0.0 REMARK 3 L TENSOR REMARK 3 L11: 0.0 L22: 0.0 REMARK 3 L33: 0.0 L12: 0.0 REMARK 3 L13: 0.0 L23: 0.0 REMARK 3 S TENSOR REMARK 3 S11: 0.0 S12: 0.0 S13: 0.0 REMARK 3 S21: 0.0 S22: 0.0 S23: 0.0 REMARK 3 S31: 0.0 S32: 0.0 S33: 0.0 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3051 38.5110 -5.6349 REMARK 3 T TENSOR REMARK 3 T11: 0.0 T22: 0.0 REMARK 3 T33: 0.0 T12: 0.0 REMARK 3 T13: 0.0 T23: 0.0 REMARK 3 L TENSOR REMARK 3 L11: 0.0 L22: 0.0 REMARK 3 L33: 0.0 L12: 0.0 REMARK 3 L13: 0.0 L23: 0.0 REMARK 3 S TENSOR REMARK 3 S11: 0.0 S12: 0.0 S13: 0.0 REMARK 3 S21: 0.0 S22: 0.0 S23: 0.0 REMARK 3 S31: 0.0 S32: 0.0 S33: 0.0 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 10 or REMARK 3 resid 12 through 22 or resid 24 through REMARK 3 119 or resid 121 through 127 or resid 129 REMARK 3 through 133 or (resid 134 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD1 or name CD2 or name REMARK 3 CE1 or name CE2 or name CZ )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 10 or REMARK 3 resid 12 through 22 or resid 24 through REMARK 3 119 or resid 121 through 127 or resid 129 REMARK 3 through 133 or (resid 134 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD1 or name CD2 or name REMARK 3 CE1 or name CE2 or name CZ )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 4 through 11 or REMARK 3 resid 13 through 19 or resid 21 through REMARK 3 29 or resid 31 or resid 33 through 44 or REMARK 3 resid 46 through 76 or resid 78 through REMARK 3 89 or resid 91 through 128)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 4 through 11 or REMARK 3 resid 13 through 19 or resid 21 through REMARK 3 29 or resid 31 or resid 33 through 44 or REMARK 3 resid 46 through 76 or resid 78 through REMARK 3 89 or resid 91 through 127 or (resid 128 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name OG )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7086 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.11770 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.90980 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.5, 15% W/V REMARK 280 PEG 6000, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.74500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.37250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.11750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.37250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 142.11750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 GLY D 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 76 OG SER B 79 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 9 106.43 -59.56 REMARK 500 MET A 36 41.85 -102.76 REMARK 500 GLU A 110 -147.58 61.72 REMARK 500 PRO A 123 -178.91 -68.65 REMARK 500 CYS B 9 104.10 -57.75 REMARK 500 MET B 36 42.81 -103.35 REMARK 500 ARG C 46 95.52 -68.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PIH RELATED DB: PDB REMARK 900 ALSO CONTAINS THE API M1_AM1-F COMPLEX DBREF 8PKC A 1 134 UNP P00630 PA2_APIME 34 167 DBREF 8PKC B 1 134 UNP P00630 PA2_APIME 34 167 DBREF 8PKC C 1 129 PDB 8PKC 8PKC 1 129 DBREF 8PKC D 1 129 PDB 8PKC 8PKC 1 129 SEQRES 1 A 134 ILE ILE TYR PRO GLY THR LEU TRP CYS GLY HIS GLY ASN SEQRES 2 A 134 LYS SER SER GLY PRO ASN GLU LEU GLY ARG PHE LYS HIS SEQRES 3 A 134 THR ASP ALA CYS CYS ARG THR HIS ASP MET CYS PRO ASP SEQRES 4 A 134 VAL MET SER ALA GLY GLU SER LYS HIS GLY LEU THR ASN SEQRES 5 A 134 THR ALA SER HIS THR ARG LEU SER CYS ASP CYS ASP ASP SEQRES 6 A 134 LYS PHE TYR ASP CYS LEU LYS ASN SER ALA ASP THR ILE SEQRES 7 A 134 SER SER TYR PHE VAL GLY LYS MET TYR PHE ASN LEU ILE SEQRES 8 A 134 ASP THR LYS CYS TYR LYS LEU GLU HIS PRO VAL THR GLY SEQRES 9 A 134 CYS GLY GLU ARG THR GLU GLY ARG CYS LEU HIS TYR THR SEQRES 10 A 134 VAL ASP LYS SER LYS PRO LYS VAL TYR GLN TRP PHE ASP SEQRES 11 A 134 LEU ARG LYS TYR SEQRES 1 B 134 ILE ILE TYR PRO GLY THR LEU TRP CYS GLY HIS GLY ASN SEQRES 2 B 134 LYS SER SER GLY PRO ASN GLU LEU GLY ARG PHE LYS HIS SEQRES 3 B 134 THR ASP ALA CYS CYS ARG THR HIS ASP MET CYS PRO ASP SEQRES 4 B 134 VAL MET SER ALA GLY GLU SER LYS HIS GLY LEU THR ASN SEQRES 5 B 134 THR ALA SER HIS THR ARG LEU SER CYS ASP CYS ASP ASP SEQRES 6 B 134 LYS PHE TYR ASP CYS LEU LYS ASN SER ALA ASP THR ILE SEQRES 7 B 134 SER SER TYR PHE VAL GLY LYS MET TYR PHE ASN LEU ILE SEQRES 8 B 134 ASP THR LYS CYS TYR LYS LEU GLU HIS PRO VAL THR GLY SEQRES 9 B 134 CYS GLY GLU ARG THR GLU GLY ARG CYS LEU HIS TYR THR SEQRES 10 B 134 VAL ASP LYS SER LYS PRO LYS VAL TYR GLN TRP PHE ASP SEQRES 11 B 134 LEU ARG LYS TYR SEQRES 1 C 129 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 C 129 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 C 129 GLY ARG THR PHE SER ARG TYR ALA MET GLY TRP PHE ARG SEQRES 4 C 129 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL SER ALA ILE SEQRES 5 C 129 SER GLY SER GLY GLY PHE THR ASP TYR ALA ASP SER VAL SEQRES 6 C 129 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SER SEQRES 7 C 129 THR VAL TYR LEU ARG MET SER SER LEU LYS PRO GLU ASP SEQRES 8 C 129 THR ALA VAL TYR TYR CYS ALA ALA GLU GLY SER ARG GLY SEQRES 9 C 129 SER SER THR ARG LEU ASP ALA ARG GLY THR TYR ASP TYR SEQRES 10 C 129 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLY SEQRES 1 D 129 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 D 129 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 D 129 GLY ARG THR PHE SER ARG TYR ALA MET GLY TRP PHE ARG SEQRES 4 D 129 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL SER ALA ILE SEQRES 5 D 129 SER GLY SER GLY GLY PHE THR ASP TYR ALA ASP SER VAL SEQRES 6 D 129 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SER SEQRES 7 D 129 THR VAL TYR LEU ARG MET SER SER LEU LYS PRO GLU ASP SEQRES 8 D 129 THR ALA VAL TYR TYR CYS ALA ALA GLU GLY SER ARG GLY SEQRES 9 D 129 SER SER THR ARG LEU ASP ALA ARG GLY THR TYR ASP TYR SEQRES 10 D 129 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLY HET NAG A 201 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 2(C8 H15 N O6) HELIX 1 AA1 PHE A 24 MET A 36 1 13 HELIX 2 AA2 SER A 60 ASN A 73 1 14 HELIX 3 AA3 ASP A 76 PHE A 88 1 13 HELIX 4 AA4 PHE B 24 MET B 36 1 13 HELIX 5 AA5 SER B 60 ASN B 73 1 14 HELIX 6 AA6 ASP B 76 PHE B 88 1 13 HELIX 7 AA7 ALA C 111 GLY C 113 5 3 HELIX 8 AA8 LYS D 88 THR D 92 5 5 HELIX 9 AA9 ALA D 111 GLY D 113 5 3 SHEET 1 AA1 2 VAL A 40 MET A 41 0 SHEET 2 AA1 2 ARG A 58 LEU A 59 -1 O ARG A 58 N MET A 41 SHEET 1 AA2 2 SER A 46 LYS A 47 0 SHEET 2 AA2 2 LEU A 50 THR A 51 -1 O LEU A 50 N LYS A 47 SHEET 1 AA3 2 LYS A 94 GLU A 99 0 SHEET 2 AA3 2 VAL A 125 ASP A 130 -1 O VAL A 125 N GLU A 99 SHEET 1 AA4 2 VAL A 102 THR A 109 0 SHEET 2 AA4 2 ARG A 112 VAL A 118 -1 O THR A 117 N THR A 103 SHEET 1 AA5 2 VAL B 40 MET B 41 0 SHEET 2 AA5 2 ARG B 58 LEU B 59 -1 O ARG B 58 N MET B 41 SHEET 1 AA6 2 SER B 46 LYS B 47 0 SHEET 2 AA6 2 LEU B 50 THR B 51 -1 O LEU B 50 N LYS B 47 SHEET 1 AA7 2 LYS B 94 GLU B 99 0 SHEET 2 AA7 2 VAL B 125 ASP B 130 -1 O VAL B 125 N GLU B 99 SHEET 1 AA8 3 VAL B 102 THR B 109 0 SHEET 2 AA8 3 ARG B 112 VAL B 118 -1 O THR B 117 N THR B 103 SHEET 3 AA8 3 THR D 107 ARG D 108 1 O THR D 107 N LEU B 114 SHEET 1 AA9 4 GLN C 4 SER C 8 0 SHEET 2 AA9 4 LEU C 19 SER C 26 -1 O ALA C 24 N VAL C 6 SHEET 3 AA9 4 THR C 79 MET C 84 -1 O LEU C 82 N LEU C 21 SHEET 4 AA9 4 PHE C 69 ASP C 74 -1 N ASP C 74 O THR C 79 SHEET 1 AB1 6 GLY C 11 VAL C 13 0 SHEET 2 AB1 6 THR C 122 VAL C 126 1 O GLN C 123 N GLY C 11 SHEET 3 AB1 6 ALA C 93 GLU C 100 -1 N TYR C 95 O THR C 122 SHEET 4 AB1 6 MET C 35 GLN C 40 -1 N GLN C 40 O VAL C 94 SHEET 5 AB1 6 GLU C 47 ILE C 52 -1 O GLU C 47 N ARG C 39 SHEET 6 AB1 6 THR C 59 TYR C 61 -1 O ASP C 60 N ALA C 51 SHEET 1 AB2 4 GLY C 11 VAL C 13 0 SHEET 2 AB2 4 THR C 122 VAL C 126 1 O GLN C 123 N GLY C 11 SHEET 3 AB2 4 ALA C 93 GLU C 100 -1 N TYR C 95 O THR C 122 SHEET 4 AB2 4 TYR C 115 TRP C 118 -1 O TYR C 117 N ALA C 99 SHEET 1 AB3 4 GLN D 4 SER D 8 0 SHEET 2 AB3 4 LEU D 19 SER D 26 -1 O ALA D 24 N VAL D 6 SHEET 3 AB3 4 THR D 79 MET D 84 -1 O LEU D 82 N LEU D 21 SHEET 4 AB3 4 PHE D 69 ASP D 74 -1 N ASP D 74 O THR D 79 SHEET 1 AB4 2 VAL D 13 GLN D 14 0 SHEET 2 AB4 2 VAL D 126 SER D 127 1 O SER D 127 N VAL D 13 SHEET 1 AB5 5 THR D 59 TYR D 61 0 SHEET 2 AB5 5 ARG D 46 ILE D 52 -1 N ALA D 51 O ASP D 60 SHEET 3 AB5 5 MET D 35 GLN D 40 -1 N ARG D 39 O GLU D 47 SHEET 4 AB5 5 ALA D 93 GLU D 100 -1 O TYR D 96 N PHE D 38 SHEET 5 AB5 5 TYR D 115 TRP D 118 -1 O TYR D 117 N ALA D 99 SHEET 1 AB6 5 THR D 59 TYR D 61 0 SHEET 2 AB6 5 ARG D 46 ILE D 52 -1 N ALA D 51 O ASP D 60 SHEET 3 AB6 5 MET D 35 GLN D 40 -1 N ARG D 39 O GLU D 47 SHEET 4 AB6 5 ALA D 93 GLU D 100 -1 O TYR D 96 N PHE D 38 SHEET 5 AB6 5 THR D 122 VAL D 124 -1 O VAL D 124 N ALA D 93 SSBOND 1 CYS A 9 CYS A 31 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 70 1555 1555 2.03 SSBOND 3 CYS A 37 CYS A 63 1555 1555 2.04 SSBOND 4 CYS A 61 CYS A 95 1555 1555 2.04 SSBOND 5 CYS A 105 CYS A 113 1555 1555 2.03 SSBOND 6 CYS B 9 CYS B 31 1555 1555 2.03 SSBOND 7 CYS B 30 CYS B 70 1555 1555 2.03 SSBOND 8 CYS B 37 CYS B 63 1555 1555 2.03 SSBOND 9 CYS B 61 CYS B 95 1555 1555 2.03 SSBOND 10 CYS B 105 CYS B 113 1555 1555 2.03 SSBOND 11 CYS C 23 CYS C 97 1555 1555 2.03 SSBOND 12 CYS D 23 CYS D 97 1555 1555 2.04 LINK ND2 ASN A 13 C1 NAG A 201 1555 1555 1.47 LINK ND2 ASN B 13 C1 NAG B 201 1555 1555 1.46 CRYST1 93.600 93.600 189.490 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005277 0.00000 MTRIX1 1 -0.256582 -0.959267 0.118209 51.36173 1 MTRIX2 1 -0.966269 0.251789 -0.054091 35.59334 1 MTRIX3 1 0.022124 -0.128101 -0.991514 -58.85702 1 MTRIX1 2 -0.217160 -0.966231 0.138705 51.70058 1 MTRIX2 2 -0.975337 0.209033 -0.070866 36.98898 1 MTRIX3 2 0.039479 -0.150674 -0.987795 -57.86121 1