HEADER PROTEIN BINDING 27-JUN-23 8PKX TITLE KELCH DOMAIN OF KEAP1 IN COMPLEX WITH A ORTHO-DIMETHYLBENZENE LINKED TITLE 2 CYCLIC PEPTIDE 11 (ORTHO-WRCNPETAEC). COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2,INRF2,KELCH-LIKE PROTEIN 19; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CP11; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KEAP1, INRF2, KIAA0132, KLHL19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDE INHIBITOR, INHIBITOR COMPLEX, CYCLIC PEPTIDE, UBIQUITIN KEYWDS 2 LIGASE, NRF2, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.B.BRAUN,L.BISCHOF,M.D.HARTMANN REVDAT 3 13-DEC-23 8PKX 1 TITLE REVDAT 2 22-NOV-23 8PKX 1 JRNL REVDAT 1 15-NOV-23 8PKX 0 JRNL AUTH F.FONSECA LOPEZ,J.MIAO,J.DAMJANOVIC,L.BISCHOF,M.B.BRAUN, JRNL AUTH 2 Y.LING,M.D.HARTMANN,Y.S.LIN,J.A.KRITZER JRNL TITL COMPUTATIONAL PREDICTION OF CYCLIC PEPTIDE STRUCTURAL JRNL TITL 2 ENSEMBLES AND APPLICATION TO THE DESIGN OF KEAP1 BINDERS. JRNL REF J.CHEM.INF.MODEL. V. 63 6925 2023 JRNL REFN ESSN 1549-960X JRNL PMID 37917529 JRNL DOI 10.1021/ACS.JCIM.3C01337 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2400 - 4.6000 1.00 4236 141 0.1696 0.2069 REMARK 3 2 4.6000 - 3.6500 1.00 4170 137 0.1310 0.1865 REMARK 3 3 3.6500 - 3.1900 1.00 4135 137 0.1643 0.1654 REMARK 3 4 3.1900 - 2.9000 1.00 4104 136 0.1767 0.1934 REMARK 3 5 2.9000 - 2.6900 1.00 4145 137 0.1763 0.2205 REMARK 3 6 2.6900 - 2.5300 1.00 4118 136 0.1900 0.2345 REMARK 3 7 2.5300 - 2.4000 1.00 4122 136 0.1920 0.2244 REMARK 3 8 2.4000 - 2.3000 1.00 4102 135 0.1816 0.2204 REMARK 3 9 2.3000 - 2.2100 1.00 4108 136 0.1820 0.2330 REMARK 3 10 2.2100 - 2.1300 1.00 4110 136 0.1849 0.1915 REMARK 3 11 2.1300 - 2.0700 1.00 4095 135 0.1940 0.2611 REMARK 3 12 2.0700 - 2.0100 1.00 4099 136 0.2065 0.2467 REMARK 3 13 2.0100 - 1.9600 1.00 4118 136 0.2249 0.2666 REMARK 3 14 1.9600 - 1.9100 1.00 4069 134 0.2604 0.2964 REMARK 3 15 1.9100 - 1.8600 1.00 4077 135 0.3031 0.3490 REMARK 3 16 1.8600 - 1.8200 1.00 4107 136 0.2983 0.3185 REMARK 3 17 1.8200 - 1.7900 0.98 4041 134 0.3163 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.236 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4745 REMARK 3 ANGLE : 0.836 6508 REMARK 3 CHIRALITY : 0.062 702 REMARK 3 PLANARITY : 0.005 868 REMARK 3 DIHEDRAL : 17.843 1668 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 42.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.930 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 6.5, 1.5 M NH4SO4, REMARK 280 0.2 % PEG 550, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.21500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.43850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.21500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.43850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 309 REMARK 465 HIS A 310 REMARK 465 MET A 311 REMARK 465 LYS A 312 REMARK 465 PRO A 313 REMARK 465 THR A 314 REMARK 465 GLN A 315 REMARK 465 VAL A 316 REMARK 465 MET A 317 REMARK 465 PRO A 318 REMARK 465 SER A 319 REMARK 465 ARG A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 LYS A 615 REMARK 465 GLN A 616 REMARK 465 ILE A 617 REMARK 465 ASP A 618 REMARK 465 GLN A 619 REMARK 465 GLN A 620 REMARK 465 ASN A 621 REMARK 465 SER A 622 REMARK 465 THR A 623 REMARK 465 SER A 624 REMARK 465 GLY B 309 REMARK 465 HIS B 310 REMARK 465 MET B 311 REMARK 465 LYS B 312 REMARK 465 PRO B 313 REMARK 465 THR B 314 REMARK 465 GLN B 315 REMARK 465 VAL B 316 REMARK 465 MET B 317 REMARK 465 PRO B 318 REMARK 465 SER B 319 REMARK 465 ARG B 320 REMARK 465 ALA B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 VAL B 324 REMARK 465 GLY B 325 REMARK 465 ARG B 614 REMARK 465 LYS B 615 REMARK 465 GLN B 616 REMARK 465 ILE B 617 REMARK 465 ASP B 618 REMARK 465 GLN B 619 REMARK 465 GLN B 620 REMARK 465 ASN B 621 REMARK 465 SER B 622 REMARK 465 THR B 623 REMARK 465 SER B 624 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 324 CG1 CG2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 385 CG OD1 OD2 REMARK 470 ASP A 422 CG OD1 OD2 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 ARG A 494 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 498 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 539 CG1 CG2 REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 SER A 613 OG REMARK 470 ARG A 614 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 327 CG CD1 CD2 REMARK 470 ASP B 349 CG OD1 OD2 REMARK 470 LEU B 353 CG CD1 CD2 REMARK 470 MET B 399 CG SD CE REMARK 470 GLN B 402 CG CD OE1 NE2 REMARK 470 SER B 404 OG REMARK 470 ASP B 422 CG OD1 OD2 REMARK 470 GLU B 444 CG CD OE1 OE2 REMARK 470 GLU B 446 CG CD OE1 OE2 REMARK 470 ARG B 447 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 453 CG1 CG2 REMARK 470 VAL B 467 CG1 CG2 REMARK 470 ARG B 470 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 493 CG CD OE1 OE2 REMARK 470 ARG B 494 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 498 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 551 CG CD CE NZ REMARK 470 HIS B 562 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 565 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 587 CG OD1 OD2 REMARK 470 GLU B 593 CG CD OE1 OE2 REMARK 470 VAL B 594 CG1 CG2 REMARK 470 THR B 595 OG1 CG2 REMARK 470 ARG B 596 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 608 CG1 CG2 REMARK 470 GLU B 611 CG CD OE1 OE2 REMARK 470 SER B 613 OG REMARK 470 TRP P -1 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP P -1 CZ3 CH2 REMARK 470 ARG P 0 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 336 -42.71 70.17 REMARK 500 ARG A 336 -44.14 70.17 REMARK 500 THR A 481 -46.67 -132.08 REMARK 500 VAL A 547 -164.96 -114.46 REMARK 500 HIS A 575 -42.73 -134.52 REMARK 500 ARG B 336 -34.35 65.83 REMARK 500 LEU B 355 -158.54 -113.13 REMARK 500 ASN B 387 63.80 -156.57 REMARK 500 GLU B 446 1.49 -63.56 REMARK 500 ARG B 447 -11.93 -143.02 REMARK 500 THR B 481 -47.77 -135.25 REMARK 500 ASN B 495 65.63 37.85 REMARK 500 GLN B 528 -31.85 -131.62 REMARK 500 VAL B 547 -166.07 -121.92 REMARK 500 THR B 609 -157.95 -167.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 710 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 338 O REMARK 620 2 ASN A 381 OD1 111.3 REMARK 620 3 ASN A 382 O 92.0 70.5 REMARK 620 4 SER A 383 OG 162.3 53.2 75.2 REMARK 620 5 HOH A 960 O 126.7 107.8 135.2 70.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 711 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 367 O REMARK 620 2 HOH A 835 O 107.1 REMARK 620 3 HOH A 897 O 107.8 110.0 REMARK 620 4 HOH A 945 O 60.6 51.8 102.5 REMARK 620 5 HOH A 956 O 136.6 90.7 102.3 140.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 709 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 508 O REMARK 620 2 SER A 508 OG 63.4 REMARK 620 3 SER A 555 OG 70.7 128.6 REMARK 620 4 HOH A 978 O 98.7 86.3 123.4 REMARK 620 5 PRO B 384 O 31.9 66.7 86.3 67.0 REMARK 620 6 ASP B 385 OD1 32.1 69.1 84.3 67.2 2.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 604 O REMARK 620 2 GOL B 703 O1 88.9 REMARK 620 3 GOL B 703 O2 97.6 56.3 REMARK 620 4 HOH B 804 O 105.4 48.1 98.9 REMARK 620 5 HOH B 849 O 151.6 117.8 105.1 87.8 REMARK 620 N 1 2 3 4 DBREF 8PKX A 312 623 UNP Q14145 KEAP1_HUMAN 312 623 DBREF 8PKX B 312 623 UNP Q14145 KEAP1_HUMAN 312 623 DBREF 8PKX P -2 9 PDB 8PKX 8PKX -2 9 SEQADV 8PKX GLY A 309 UNP Q14145 EXPRESSION TAG SEQADV 8PKX HIS A 310 UNP Q14145 EXPRESSION TAG SEQADV 8PKX MET A 311 UNP Q14145 EXPRESSION TAG SEQADV 8PKX SER A 319 UNP Q14145 CYS 319 CONFLICT SEQADV 8PKX ALA A 540 UNP Q14145 GLU 540 CONFLICT SEQADV 8PKX ALA A 542 UNP Q14145 GLU 542 CONFLICT SEQADV 8PKX SER A 613 UNP Q14145 CYS 613 CONFLICT SEQADV 8PKX SER A 622 UNP Q14145 CYS 622 CONFLICT SEQADV 8PKX SER A 624 UNP Q14145 EXPRESSION TAG SEQADV 8PKX GLY B 309 UNP Q14145 EXPRESSION TAG SEQADV 8PKX HIS B 310 UNP Q14145 EXPRESSION TAG SEQADV 8PKX MET B 311 UNP Q14145 EXPRESSION TAG SEQADV 8PKX SER B 319 UNP Q14145 CYS 319 CONFLICT SEQADV 8PKX ALA B 540 UNP Q14145 GLU 540 CONFLICT SEQADV 8PKX ALA B 542 UNP Q14145 GLU 542 CONFLICT SEQADV 8PKX SER B 613 UNP Q14145 CYS 613 CONFLICT SEQADV 8PKX SER B 622 UNP Q14145 CYS 622 CONFLICT SEQADV 8PKX SER B 624 UNP Q14145 EXPRESSION TAG SEQRES 1 A 316 GLY HIS MET LYS PRO THR GLN VAL MET PRO SER ARG ALA SEQRES 2 A 316 PRO LYS VAL GLY ARG LEU ILE TYR THR ALA GLY GLY TYR SEQRES 3 A 316 PHE ARG GLN SER LEU SER TYR LEU GLU ALA TYR ASN PRO SEQRES 4 A 316 SER ASP GLY THR TRP LEU ARG LEU ALA ASP LEU GLN VAL SEQRES 5 A 316 PRO ARG SER GLY LEU ALA GLY CYS VAL VAL GLY GLY LEU SEQRES 6 A 316 LEU TYR ALA VAL GLY GLY ARG ASN ASN SER PRO ASP GLY SEQRES 7 A 316 ASN THR ASP SER SER ALA LEU ASP CYS TYR ASN PRO MET SEQRES 8 A 316 THR ASN GLN TRP SER PRO CYS ALA PRO MET SER VAL PRO SEQRES 9 A 316 ARG ASN ARG ILE GLY VAL GLY VAL ILE ASP GLY HIS ILE SEQRES 10 A 316 TYR ALA VAL GLY GLY SER HIS GLY CYS ILE HIS HIS ASN SEQRES 11 A 316 SER VAL GLU ARG TYR GLU PRO GLU ARG ASP GLU TRP HIS SEQRES 12 A 316 LEU VAL ALA PRO MET LEU THR ARG ARG ILE GLY VAL GLY SEQRES 13 A 316 VAL ALA VAL LEU ASN ARG LEU LEU TYR ALA VAL GLY GLY SEQRES 14 A 316 PHE ASP GLY THR ASN ARG LEU ASN SER ALA GLU CYS TYR SEQRES 15 A 316 TYR PRO GLU ARG ASN GLU TRP ARG MET ILE THR ALA MET SEQRES 16 A 316 ASN THR ILE ARG SER GLY ALA GLY VAL CYS VAL LEU HIS SEQRES 17 A 316 ASN CYS ILE TYR ALA ALA GLY GLY TYR ASP GLY GLN ASP SEQRES 18 A 316 GLN LEU ASN SER VAL GLU ARG TYR ASP VAL ALA THR ALA SEQRES 19 A 316 THR TRP THR PHE VAL ALA PRO MET LYS HIS ARG ARG SER SEQRES 20 A 316 ALA LEU GLY ILE THR VAL HIS GLN GLY ARG ILE TYR VAL SEQRES 21 A 316 LEU GLY GLY TYR ASP GLY HIS THR PHE LEU ASP SER VAL SEQRES 22 A 316 GLU CYS TYR ASP PRO ASP THR ASP THR TRP SER GLU VAL SEQRES 23 A 316 THR ARG MET THR SER GLY ARG SER GLY VAL GLY VAL ALA SEQRES 24 A 316 VAL THR MET GLU PRO SER ARG LYS GLN ILE ASP GLN GLN SEQRES 25 A 316 ASN SER THR SER SEQRES 1 B 316 GLY HIS MET LYS PRO THR GLN VAL MET PRO SER ARG ALA SEQRES 2 B 316 PRO LYS VAL GLY ARG LEU ILE TYR THR ALA GLY GLY TYR SEQRES 3 B 316 PHE ARG GLN SER LEU SER TYR LEU GLU ALA TYR ASN PRO SEQRES 4 B 316 SER ASP GLY THR TRP LEU ARG LEU ALA ASP LEU GLN VAL SEQRES 5 B 316 PRO ARG SER GLY LEU ALA GLY CYS VAL VAL GLY GLY LEU SEQRES 6 B 316 LEU TYR ALA VAL GLY GLY ARG ASN ASN SER PRO ASP GLY SEQRES 7 B 316 ASN THR ASP SER SER ALA LEU ASP CYS TYR ASN PRO MET SEQRES 8 B 316 THR ASN GLN TRP SER PRO CYS ALA PRO MET SER VAL PRO SEQRES 9 B 316 ARG ASN ARG ILE GLY VAL GLY VAL ILE ASP GLY HIS ILE SEQRES 10 B 316 TYR ALA VAL GLY GLY SER HIS GLY CYS ILE HIS HIS ASN SEQRES 11 B 316 SER VAL GLU ARG TYR GLU PRO GLU ARG ASP GLU TRP HIS SEQRES 12 B 316 LEU VAL ALA PRO MET LEU THR ARG ARG ILE GLY VAL GLY SEQRES 13 B 316 VAL ALA VAL LEU ASN ARG LEU LEU TYR ALA VAL GLY GLY SEQRES 14 B 316 PHE ASP GLY THR ASN ARG LEU ASN SER ALA GLU CYS TYR SEQRES 15 B 316 TYR PRO GLU ARG ASN GLU TRP ARG MET ILE THR ALA MET SEQRES 16 B 316 ASN THR ILE ARG SER GLY ALA GLY VAL CYS VAL LEU HIS SEQRES 17 B 316 ASN CYS ILE TYR ALA ALA GLY GLY TYR ASP GLY GLN ASP SEQRES 18 B 316 GLN LEU ASN SER VAL GLU ARG TYR ASP VAL ALA THR ALA SEQRES 19 B 316 THR TRP THR PHE VAL ALA PRO MET LYS HIS ARG ARG SER SEQRES 20 B 316 ALA LEU GLY ILE THR VAL HIS GLN GLY ARG ILE TYR VAL SEQRES 21 B 316 LEU GLY GLY TYR ASP GLY HIS THR PHE LEU ASP SER VAL SEQRES 22 B 316 GLU CYS TYR ASP PRO ASP THR ASP THR TRP SER GLU VAL SEQRES 23 B 316 THR ARG MET THR SER GLY ARG SER GLY VAL GLY VAL ALA SEQRES 24 B 316 VAL THR MET GLU PRO SER ARG LYS GLN ILE ASP GLN GLN SEQRES 25 B 316 ASN SER THR SER SEQRES 1 P 12 ACE TRP ARG CYS ASN PRO GLU THR DAL GLU CYS NH2 HET ACE P -2 3 HET DAL P 6 5 HET NH2 P 9 1 HET CL A 701 1 HET CL A 702 1 HET EDO A 703 4 HET EDO A 704 4 HET GOL A 705 6 HET EDO A 706 4 HET EDO A 707 4 HET GOL A 708 6 HET NA A 709 1 HET NA A 710 1 HET NA A 711 1 HET SO4 B 701 5 HET NA B 702 1 HET GOL B 703 6 HET EDO B 704 4 HET GOL B 705 6 HET EDO B 706 4 HET ZK2 P 101 8 HETNAM ACE ACETYL GROUP HETNAM DAL D-ALANINE HETNAM NH2 AMINO GROUP HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM ZK2 (2-METHYLPHENYL)METHANOL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE C2 H4 O FORMUL 3 DAL C3 H7 N O2 FORMUL 3 NH2 H2 N FORMUL 4 CL 2(CL 1-) FORMUL 6 EDO 6(C2 H6 O2) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 NA 4(NA 1+) FORMUL 15 SO4 O4 S 2- FORMUL 21 ZK2 C8 H10 O FORMUL 22 HOH *289(H2 O) HELIX 1 AA1 PRO B 492 ASN B 495 5 4 SHEET 1 AA1 4 TRP A 352 ARG A 354 0 SHEET 2 AA1 4 LEU A 342 TYR A 345 -1 N ALA A 344 O LEU A 353 SHEET 3 AA1 4 ARG A 326 ALA A 331 -1 N THR A 330 O GLU A 343 SHEET 4 AA1 4 GLY A 605 MET A 610 -1 O GLY A 605 N ALA A 331 SHEET 1 AA2 4 ALA A 366 VAL A 370 0 SHEET 2 AA2 4 LEU A 373 VAL A 377 -1 O TYR A 375 N CYS A 368 SHEET 3 AA2 4 LEU A 393 TYR A 396 -1 O TYR A 396 N LEU A 374 SHEET 4 AA2 4 TRP A 403 PRO A 405 -1 O SER A 404 N CYS A 395 SHEET 1 AA3 2 ARG A 380 SER A 383 0 SHEET 2 AA3 2 GLY A 386 ASP A 389 -1 O THR A 388 N ASN A 381 SHEET 1 AA4 4 GLY A 417 ILE A 421 0 SHEET 2 AA4 4 HIS A 424 VAL A 428 -1 O TYR A 426 N GLY A 419 SHEET 3 AA4 4 VAL A 440 TYR A 443 -1 O TYR A 443 N ILE A 425 SHEET 4 AA4 4 TRP A 450 VAL A 453 -1 O HIS A 451 N ARG A 442 SHEET 1 AA5 2 SER A 431 HIS A 432 0 SHEET 2 AA5 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 AA6 4 GLY A 464 LEU A 468 0 SHEET 2 AA6 4 LEU A 471 VAL A 475 -1 O VAL A 475 N GLY A 464 SHEET 3 AA6 4 ALA A 487 TYR A 491 -1 O TYR A 490 N LEU A 472 SHEET 4 AA6 4 GLU A 496 MET A 499 -1 O ARG A 498 N CYS A 489 SHEET 1 AA7 4 GLY A 511 LEU A 515 0 SHEET 2 AA7 4 CYS A 518 ALA A 522 -1 O TYR A 520 N CYS A 513 SHEET 3 AA7 4 VAL A 534 ASP A 538 -1 O TYR A 537 N ILE A 519 SHEET 4 AA7 4 THR A 543 VAL A 547 -1 O VAL A 547 N VAL A 534 SHEET 1 AA8 4 GLY A 558 HIS A 562 0 SHEET 2 AA8 4 ARG A 565 LEU A 569 -1 O TYR A 567 N THR A 560 SHEET 3 AA8 4 SER A 580 ASP A 585 -1 O GLU A 582 N VAL A 568 SHEET 4 AA8 4 THR A 590 ARG A 596 -1 O SER A 592 N CYS A 583 SHEET 1 AA9 4 THR B 351 ARG B 354 0 SHEET 2 AA9 4 LEU B 342 ASN B 346 -1 N ASN B 346 O THR B 351 SHEET 3 AA9 4 LEU B 327 ALA B 331 -1 N THR B 330 O GLU B 343 SHEET 4 AA9 4 GLY B 605 THR B 609 -1 O GLY B 605 N ALA B 331 SHEET 1 AB1 4 ALA B 366 VAL B 370 0 SHEET 2 AB1 4 LEU B 373 VAL B 377 -1 O TYR B 375 N CYS B 368 SHEET 3 AB1 4 LEU B 393 ASN B 397 -1 O TYR B 396 N LEU B 374 SHEET 4 AB1 4 GLN B 402 PRO B 405 -1 O SER B 404 N CYS B 395 SHEET 1 AB2 2 ARG B 380 SER B 383 0 SHEET 2 AB2 2 GLY B 386 ASP B 389 -1 O GLY B 386 N SER B 383 SHEET 1 AB3 4 GLY B 417 ILE B 421 0 SHEET 2 AB3 4 HIS B 424 VAL B 428 -1 O VAL B 428 N GLY B 417 SHEET 3 AB3 4 VAL B 440 TYR B 443 -1 O GLU B 441 N ALA B 427 SHEET 4 AB3 4 TRP B 450 VAL B 453 -1 O HIS B 451 N ARG B 442 SHEET 1 AB4 2 SER B 431 HIS B 432 0 SHEET 2 AB4 2 ILE B 435 HIS B 436 -1 O ILE B 435 N HIS B 432 SHEET 1 AB5 4 GLY B 464 LEU B 468 0 SHEET 2 AB5 4 LEU B 471 VAL B 475 -1 O TYR B 473 N ALA B 466 SHEET 3 AB5 4 ALA B 487 TYR B 490 -1 O TYR B 490 N LEU B 472 SHEET 4 AB5 4 TRP B 497 MET B 499 -1 O ARG B 498 N CYS B 489 SHEET 1 AB6 4 GLY B 511 LEU B 515 0 SHEET 2 AB6 4 CYS B 518 ALA B 522 -1 O TYR B 520 N CYS B 513 SHEET 3 AB6 4 VAL B 534 ASP B 538 -1 O TYR B 537 N ILE B 519 SHEET 4 AB6 4 THR B 543 PHE B 546 -1 O THR B 545 N ARG B 536 SHEET 1 AB7 4 GLY B 558 HIS B 562 0 SHEET 2 AB7 4 ARG B 565 LEU B 569 -1 O TYR B 567 N THR B 560 SHEET 3 AB7 4 SER B 580 ASP B 585 -1 O TYR B 584 N ILE B 566 SHEET 4 AB7 4 THR B 590 ARG B 596 -1 O VAL B 594 N VAL B 581 LINK C ACE P -2 N TRP P -1 1555 1555 1.33 LINK SG CYS P 1 C1 ZK2 P 101 1555 1555 1.82 LINK C THR P 5 N DAL P 6 1555 1555 1.33 LINK C DAL P 6 N GLU P 7 1555 1555 1.33 LINK C CYS P 8 N NH2 P 9 1555 1555 1.33 LINK SG ACYS P 8 C8 ZK2 P 101 1555 1555 1.82 LINK SG BCYS P 8 C8 ZK2 P 101 1555 1555 1.82 LINK O SER A 338 NA NA A 710 1555 1555 3.01 LINK O GLY A 367 NA NA A 711 1555 1555 2.77 LINK OD1 ASN A 381 NA NA A 710 1555 1555 3.18 LINK O ASN A 382 NA NA A 710 1555 1555 2.97 LINK OG BSER A 383 NA NA A 710 1555 1555 2.57 LINK O SER A 508 NA NA A 709 1555 1555 3.09 LINK OG ASER A 508 NA NA A 709 1555 1555 2.80 LINK OG SER A 555 NA NA A 709 1555 1555 2.96 LINK NA NA A 709 O HOH A 978 1555 1555 3.16 LINK NA NA A 709 O PRO B 384 1556 1555 2.92 LINK NA NA A 709 OD1 ASP B 385 1556 1555 3.02 LINK NA NA A 710 O HOH A 960 1555 1555 2.74 LINK NA NA A 711 O HOH A 835 1555 1555 3.00 LINK NA NA A 711 O HOH A 897 1555 1555 2.80 LINK NA NA A 711 O HOH A 945 1555 1555 3.11 LINK NA NA A 711 O HOH A 956 1555 1555 2.74 LINK O VAL B 604 NA NA B 702 1555 1555 2.87 LINK NA NA B 702 O1 GOL B 703 1555 1555 3.11 LINK NA NA B 702 O2 GOL B 703 1555 1555 2.75 LINK NA NA B 702 O HOH B 804 1555 1555 3.06 LINK NA NA B 702 O HOH B 849 1555 1555 3.05 CRYST1 162.430 68.877 78.252 90.00 117.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006156 0.000000 0.003229 0.00000 SCALE2 0.000000 0.014519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014430 0.00000