data_8PKZ # _entry.id 8PKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PKZ pdb_00008pkz 10.2210/pdb8pkz/pdb WWPDB D_1292131213 ? ? BMRB 27853 ? 10.13018/BMR27853 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8PKZ _pdbx_database_status.recvd_initial_deposition_date 2023-06-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 27853 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email woehnert@bio.uni-frankfurt.de _pdbx_contact_author.name_first Jens _pdbx_contact_author.name_last Woehnert _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7193-401X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Neissner, K.' 1 0000-0002-1332-2688 'Woehnert, J.' 2 0000-0001-7193-401X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'NMR solution structure of GSPIIB of Thermus thermophilus in the c-di-GMP bound state' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Neissner, K.' 1 0000-0002-1332-2688 primary 'Woehnert, J.' 2 0000-0001-7193-401X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-binding motif-containing protein pilF' 16269.562 1 ? ? ? 'Each molecule consists of the protein bound to c-di-GMP (residues 147-148).' 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'c-di-GMP binding domain of the ATPase enzyme PilF' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGEGQKDLKLGELLLQKGWISREALEEALVEQEKTGDLLGRILVRKGLPEEALYRALAEQKGLEFLESTEGIVPDPSA ALLLLRSDALRYGAVPIGFQNGEVEVVLSDPRHKEAVAQLLNRPARFYLALPQAWEELFRRAYPQK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGEGQKDLKLGELLLQKGWISREALEEALVEQEKTGDLLGRILVRKGLPEEALYRALAEQKGLEFLESTEGIVPDPSA ALLLLRSDALRYGAVPIGFQNGEVEVVLSDPRHKEAVAQLLNRPARFYLALPQAWEELFRRAYPQK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "GUANOSINE-5'-MONOPHOSPHATE" _pdbx_entity_nonpoly.comp_id 5GP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 GLU n 1 6 GLY n 1 7 GLN n 1 8 LYS n 1 9 ASP n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 GLY n 1 14 GLU n 1 15 LEU n 1 16 LEU n 1 17 LEU n 1 18 GLN n 1 19 LYS n 1 20 GLY n 1 21 TRP n 1 22 ILE n 1 23 SER n 1 24 ARG n 1 25 GLU n 1 26 ALA n 1 27 LEU n 1 28 GLU n 1 29 GLU n 1 30 ALA n 1 31 LEU n 1 32 VAL n 1 33 GLU n 1 34 GLN n 1 35 GLU n 1 36 LYS n 1 37 THR n 1 38 GLY n 1 39 ASP n 1 40 LEU n 1 41 LEU n 1 42 GLY n 1 43 ARG n 1 44 ILE n 1 45 LEU n 1 46 VAL n 1 47 ARG n 1 48 LYS n 1 49 GLY n 1 50 LEU n 1 51 PRO n 1 52 GLU n 1 53 GLU n 1 54 ALA n 1 55 LEU n 1 56 TYR n 1 57 ARG n 1 58 ALA n 1 59 LEU n 1 60 ALA n 1 61 GLU n 1 62 GLN n 1 63 LYS n 1 64 GLY n 1 65 LEU n 1 66 GLU n 1 67 PHE n 1 68 LEU n 1 69 GLU n 1 70 SER n 1 71 THR n 1 72 GLU n 1 73 GLY n 1 74 ILE n 1 75 VAL n 1 76 PRO n 1 77 ASP n 1 78 PRO n 1 79 SER n 1 80 ALA n 1 81 ALA n 1 82 LEU n 1 83 LEU n 1 84 LEU n 1 85 LEU n 1 86 ARG n 1 87 SER n 1 88 ASP n 1 89 ALA n 1 90 LEU n 1 91 ARG n 1 92 TYR n 1 93 GLY n 1 94 ALA n 1 95 VAL n 1 96 PRO n 1 97 ILE n 1 98 GLY n 1 99 PHE n 1 100 GLN n 1 101 ASN n 1 102 GLY n 1 103 GLU n 1 104 VAL n 1 105 GLU n 1 106 VAL n 1 107 VAL n 1 108 LEU n 1 109 SER n 1 110 ASP n 1 111 PRO n 1 112 ARG n 1 113 HIS n 1 114 LYS n 1 115 GLU n 1 116 ALA n 1 117 VAL n 1 118 ALA n 1 119 GLN n 1 120 LEU n 1 121 LEU n 1 122 ASN n 1 123 ARG n 1 124 PRO n 1 125 ALA n 1 126 ARG n 1 127 PHE n 1 128 TYR n 1 129 LEU n 1 130 ALA n 1 131 LEU n 1 132 PRO n 1 133 GLN n 1 134 ALA n 1 135 TRP n 1 136 GLU n 1 137 GLU n 1 138 LEU n 1 139 PHE n 1 140 ARG n 1 141 ARG n 1 142 ALA n 1 143 TYR n 1 144 PRO n 1 145 GLN n 1 146 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 146 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pilF, TT_C1622' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus HB27' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262724 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 157 157 GLY GLY A . n A 1 2 SER 2 158 158 SER SER A . n A 1 3 SER 3 159 159 SER SER A . n A 1 4 GLY 4 160 160 GLY GLY A . n A 1 5 GLU 5 161 161 GLU GLU A . n A 1 6 GLY 6 162 162 GLY GLY A . n A 1 7 GLN 7 163 163 GLN GLN A . n A 1 8 LYS 8 164 164 LYS LYS A . n A 1 9 ASP 9 165 165 ASP ASP A . n A 1 10 LEU 10 166 166 LEU LEU A . n A 1 11 LYS 11 167 167 LYS LYS A . n A 1 12 LEU 12 168 168 LEU LEU A . n A 1 13 GLY 13 169 169 GLY GLY A . n A 1 14 GLU 14 170 170 GLU GLU A . n A 1 15 LEU 15 171 171 LEU LEU A . n A 1 16 LEU 16 172 172 LEU LEU A . n A 1 17 LEU 17 173 173 LEU LEU A . n A 1 18 GLN 18 174 174 GLN GLN A . n A 1 19 LYS 19 175 175 LYS LYS A . n A 1 20 GLY 20 176 176 GLY GLY A . n A 1 21 TRP 21 177 177 TRP TRP A . n A 1 22 ILE 22 178 178 ILE ILE A . n A 1 23 SER 23 179 179 SER SER A . n A 1 24 ARG 24 180 180 ARG ARG A . n A 1 25 GLU 25 181 181 GLU GLU A . n A 1 26 ALA 26 182 182 ALA ALA A . n A 1 27 LEU 27 183 183 LEU LEU A . n A 1 28 GLU 28 184 184 GLU GLU A . n A 1 29 GLU 29 185 185 GLU GLU A . n A 1 30 ALA 30 186 186 ALA ALA A . n A 1 31 LEU 31 187 187 LEU LEU A . n A 1 32 VAL 32 188 188 VAL VAL A . n A 1 33 GLU 33 189 189 GLU GLU A . n A 1 34 GLN 34 190 190 GLN GLN A . n A 1 35 GLU 35 191 191 GLU GLU A . n A 1 36 LYS 36 192 192 LYS LYS A . n A 1 37 THR 37 193 193 THR THR A . n A 1 38 GLY 38 194 194 GLY GLY A . n A 1 39 ASP 39 195 195 ASP ASP A . n A 1 40 LEU 40 196 196 LEU LEU A . n A 1 41 LEU 41 197 197 LEU LEU A . n A 1 42 GLY 42 198 198 GLY GLY A . n A 1 43 ARG 43 199 199 ARG ARG A . n A 1 44 ILE 44 200 200 ILE ILE A . n A 1 45 LEU 45 201 201 LEU LEU A . n A 1 46 VAL 46 202 202 VAL VAL A . n A 1 47 ARG 47 203 203 ARG ARG A . n A 1 48 LYS 48 204 204 LYS LYS A . n A 1 49 GLY 49 205 205 GLY GLY A . n A 1 50 LEU 50 206 206 LEU LEU A . n A 1 51 PRO 51 207 207 PRO PRO A . n A 1 52 GLU 52 208 208 GLU GLU A . n A 1 53 GLU 53 209 209 GLU GLU A . n A 1 54 ALA 54 210 210 ALA ALA A . n A 1 55 LEU 55 211 211 LEU LEU A . n A 1 56 TYR 56 212 212 TYR TYR A . n A 1 57 ARG 57 213 213 ARG ARG A . n A 1 58 ALA 58 214 214 ALA ALA A . n A 1 59 LEU 59 215 215 LEU LEU A . n A 1 60 ALA 60 216 216 ALA ALA A . n A 1 61 GLU 61 217 217 GLU GLU A . n A 1 62 GLN 62 218 218 GLN GLN A . n A 1 63 LYS 63 219 219 LYS LYS A . n A 1 64 GLY 64 220 220 GLY GLY A . n A 1 65 LEU 65 221 221 LEU LEU A . n A 1 66 GLU 66 222 222 GLU GLU A . n A 1 67 PHE 67 223 223 PHE PHE A . n A 1 68 LEU 68 224 224 LEU LEU A . n A 1 69 GLU 69 225 225 GLU GLU A . n A 1 70 SER 70 226 226 SER SER A . n A 1 71 THR 71 227 227 THR THR A . n A 1 72 GLU 72 228 228 GLU GLU A . n A 1 73 GLY 73 229 229 GLY GLY A . n A 1 74 ILE 74 230 230 ILE ILE A . n A 1 75 VAL 75 231 231 VAL VAL A . n A 1 76 PRO 76 232 232 PRO PRO A . n A 1 77 ASP 77 233 233 ASP ASP A . n A 1 78 PRO 78 234 234 PRO PRO A . n A 1 79 SER 79 235 235 SER SER A . n A 1 80 ALA 80 236 236 ALA ALA A . n A 1 81 ALA 81 237 237 ALA ALA A . n A 1 82 LEU 82 238 238 LEU LEU A . n A 1 83 LEU 83 239 239 LEU LEU A . n A 1 84 LEU 84 240 240 LEU LEU A . n A 1 85 LEU 85 241 241 LEU LEU A . n A 1 86 ARG 86 242 242 ARG ARG A . n A 1 87 SER 87 243 243 SER SER A . n A 1 88 ASP 88 244 244 ASP ASP A . n A 1 89 ALA 89 245 245 ALA ALA A . n A 1 90 LEU 90 246 246 LEU LEU A . n A 1 91 ARG 91 247 247 ARG ARG A . n A 1 92 TYR 92 248 248 TYR TYR A . n A 1 93 GLY 93 249 249 GLY GLY A . n A 1 94 ALA 94 250 250 ALA ALA A . n A 1 95 VAL 95 251 251 VAL VAL A . n A 1 96 PRO 96 252 252 PRO PRO A . n A 1 97 ILE 97 253 253 ILE ILE A . n A 1 98 GLY 98 254 254 GLY GLY A . n A 1 99 PHE 99 255 255 PHE PHE A . n A 1 100 GLN 100 256 256 GLN GLN A . n A 1 101 ASN 101 257 257 ASN ASN A . n A 1 102 GLY 102 258 258 GLY GLY A . n A 1 103 GLU 103 259 259 GLU GLU A . n A 1 104 VAL 104 260 260 VAL VAL A . n A 1 105 GLU 105 261 261 GLU GLU A . n A 1 106 VAL 106 262 262 VAL VAL A . n A 1 107 VAL 107 263 263 VAL VAL A . n A 1 108 LEU 108 264 264 LEU LEU A . n A 1 109 SER 109 265 265 SER SER A . n A 1 110 ASP 110 266 266 ASP ASP A . n A 1 111 PRO 111 267 267 PRO PRO A . n A 1 112 ARG 112 268 268 ARG ARG A . n A 1 113 HIS 113 269 269 HIS HIS A . n A 1 114 LYS 114 270 270 LYS LYS A . n A 1 115 GLU 115 271 271 GLU GLU A . n A 1 116 ALA 116 272 272 ALA ALA A . n A 1 117 VAL 117 273 273 VAL VAL A . n A 1 118 ALA 118 274 274 ALA ALA A . n A 1 119 GLN 119 275 275 GLN GLN A . n A 1 120 LEU 120 276 276 LEU LEU A . n A 1 121 LEU 121 277 277 LEU LEU A . n A 1 122 ASN 122 278 278 ASN ASN A . n A 1 123 ARG 123 279 279 ARG ARG A . n A 1 124 PRO 124 280 280 PRO PRO A . n A 1 125 ALA 125 281 281 ALA ALA A . n A 1 126 ARG 126 282 282 ARG ARG A . n A 1 127 PHE 127 283 283 PHE PHE A . n A 1 128 TYR 128 284 284 TYR TYR A . n A 1 129 LEU 129 285 285 LEU LEU A . n A 1 130 ALA 130 286 286 ALA ALA A . n A 1 131 LEU 131 287 287 LEU LEU A . n A 1 132 PRO 132 288 288 PRO PRO A . n A 1 133 GLN 133 289 289 GLN GLN A . n A 1 134 ALA 134 290 290 ALA ALA A . n A 1 135 TRP 135 291 291 TRP TRP A . n A 1 136 GLU 136 292 292 GLU GLU A . n A 1 137 GLU 137 293 293 GLU GLU A . n A 1 138 LEU 138 294 294 LEU LEU A . n A 1 139 PHE 139 295 295 PHE PHE A . n A 1 140 ARG 140 296 296 ARG ARG A . n A 1 141 ARG 141 297 297 ARG ARG A . n A 1 142 ALA 142 298 298 ALA ALA A . n A 1 143 TYR 143 299 299 TYR TYR A . n A 1 144 PRO 144 300 300 PRO PRO A . n A 1 145 GLN 145 301 301 GLN GLN A . n A 1 146 LYS 146 302 302 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 336 336 5GP GMP A . C 2 5GP 1 337 337 5GP GMP A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PKZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8PKZ _struct.title 'NMR solution structure of PilF-GSPIIB in the c-di-GMP bound state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PKZ _struct_keywords.text 'PilT class, NMR-structure, ligand binding, GSPII, MOTOR PROTEIN' _struct_keywords.pdbx_keywords 'MOTOR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q72H73_THET2 _struct_ref.pdbx_db_accession Q72H73 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PPSGEGQKDLKLGELLLQKGWISREALEEALVEQEKTGDLLGRILVRKGLPEEALYRALAEQKGLEFLESTEGIVPDPSA ALLLLRSDALRYGAVPIGFQNGEVEVVLSDPRHKEAVAQLLNRPARFYLALPQAWEELFRRAYPQK ; _struct_ref.pdbx_align_begin 157 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PKZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q72H73 _struct_ref_seq.db_align_beg 157 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 302 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 157 _struct_ref_seq.pdbx_auth_seq_align_end 302 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8PKZ GLY A 1 ? UNP Q72H73 PRO 157 'engineered mutation' 157 1 1 8PKZ SER A 2 ? UNP Q72H73 PRO 158 'engineered mutation' 158 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE -2 ? 1 'SSA (A^2)' 9090 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 11 ? GLY A 20 ? LYS A 167 GLY A 176 1 ? 10 HELX_P HELX_P2 AA2 SER A 23 ? GLY A 38 ? SER A 179 GLY A 194 1 ? 16 HELX_P HELX_P3 AA3 LEU A 40 ? VAL A 46 ? LEU A 196 VAL A 202 1 ? 7 HELX_P HELX_P4 AA4 ARG A 47 ? GLY A 49 ? ARG A 203 GLY A 205 5 ? 3 HELX_P HELX_P5 AA5 PRO A 51 ? LYS A 63 ? PRO A 207 LYS A 219 1 ? 13 HELX_P HELX_P6 AA6 ASP A 77 ? LEU A 82 ? ASP A 233 LEU A 238 1 ? 6 HELX_P HELX_P7 AA7 LEU A 85 ? GLY A 93 ? LEU A 241 GLY A 249 1 ? 9 HELX_P HELX_P8 AA8 ASP A 110 ? ARG A 112 ? ASP A 266 ARG A 268 5 ? 3 HELX_P HELX_P9 AA9 HIS A 113 ? ASN A 122 ? HIS A 269 ASN A 278 1 ? 10 HELX_P HELX_P10 AB1 LEU A 131 ? TYR A 143 ? LEU A 287 TYR A 299 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B 5GP . P ? ? ? 1_555 C 5GP . "O3'" ? ? A 5GP 336 A 5GP 337 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale2 covale one ? B 5GP . "O3'" ? ? ? 1_555 C 5GP . P ? ? A 5GP 336 A 5GP 337 1_555 ? ? ? ? ? ? ? 1.615 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 66 ? PHE A 67 ? GLU A 222 PHE A 223 AA1 2 ALA A 125 ? LEU A 129 ? ALA A 281 LEU A 285 AA1 3 GLU A 103 ? LEU A 108 ? GLU A 259 LEU A 264 AA1 4 ALA A 94 ? GLN A 100 ? ALA A 250 GLN A 256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 66 ? N GLU A 222 O LEU A 129 ? O LEU A 285 AA1 2 3 O ARG A 126 ? O ARG A 282 N VAL A 106 ? N VAL A 262 AA1 3 4 O GLU A 105 ? O GLU A 261 N GLY A 98 ? N GLY A 254 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 226 ? ? -171.34 -176.37 2 1 ILE A 253 ? ? -160.45 -45.60 3 1 SER A 265 ? ? -96.41 35.04 4 1 ASP A 266 ? ? -157.03 88.49 5 1 TYR A 299 ? ? -113.42 74.41 6 2 SER A 158 ? ? 60.69 62.18 7 2 GLU A 161 ? ? -146.06 -64.72 8 2 SER A 226 ? ? -170.29 -176.43 9 2 ILE A 253 ? ? -159.37 -41.21 10 2 SER A 265 ? ? -96.01 35.07 11 2 ASP A 266 ? ? -156.81 88.46 12 2 TYR A 299 ? ? -113.52 74.23 13 3 GLU A 161 ? ? -136.06 -61.70 14 3 SER A 226 ? ? -171.52 -176.38 15 3 ILE A 253 ? ? -160.24 -45.40 16 3 SER A 265 ? ? -95.67 35.29 17 3 ASP A 266 ? ? -156.68 87.96 18 3 TYR A 299 ? ? -113.39 74.44 19 3 PRO A 300 ? ? -69.70 99.55 20 4 GLU A 161 ? ? -154.29 46.27 21 4 SER A 226 ? ? -172.12 -176.33 22 4 ILE A 253 ? ? -160.17 -45.63 23 4 SER A 265 ? ? -95.53 35.28 24 4 ASP A 266 ? ? -155.98 87.46 25 4 TYR A 299 ? ? -113.57 74.35 26 5 SER A 158 ? ? 53.87 85.82 27 5 GLU A 161 ? ? -94.89 -74.35 28 5 SER A 226 ? ? -171.55 -176.38 29 5 ILE A 253 ? ? -160.17 -45.39 30 5 SER A 265 ? ? -95.70 35.04 31 5 ASP A 266 ? ? -155.10 87.69 32 5 TYR A 299 ? ? -113.58 74.06 33 6 SER A 159 ? ? -59.15 -178.49 34 6 GLU A 161 ? ? -105.52 41.01 35 6 SER A 226 ? ? -171.15 -176.38 36 6 ILE A 253 ? ? -159.85 -45.30 37 6 SER A 265 ? ? -97.38 35.04 38 6 ASP A 266 ? ? -156.90 88.71 39 6 TYR A 299 ? ? -113.45 74.54 40 7 SER A 158 ? ? 60.27 173.73 41 7 SER A 226 ? ? -172.71 -176.32 42 7 ILE A 253 ? ? -160.17 -45.56 43 7 SER A 265 ? ? -95.59 35.53 44 7 ASP A 266 ? ? -156.53 87.63 45 7 TYR A 299 ? ? -113.47 74.26 46 8 SER A 159 ? ? -135.41 -41.45 47 8 GLU A 161 ? ? -165.46 -74.28 48 8 SER A 226 ? ? -172.99 -176.40 49 8 ILE A 253 ? ? -159.93 -45.29 50 8 SER A 265 ? ? -95.69 35.08 51 8 ASP A 266 ? ? -157.16 87.82 52 8 TYR A 299 ? ? -113.37 74.53 53 9 GLU A 161 ? ? -171.85 -71.31 54 9 GLU A 228 ? ? -56.94 99.42 55 9 ILE A 253 ? ? -161.02 -46.05 56 9 ASP A 266 ? ? -153.03 87.99 57 9 TYR A 299 ? ? -113.60 74.64 58 9 PRO A 300 ? ? -69.69 -171.27 59 10 GLU A 161 ? ? -149.10 -71.00 60 10 GLN A 163 ? ? 61.50 167.38 61 10 SER A 226 ? ? -172.79 -176.39 62 10 ILE A 253 ? ? -159.44 -44.85 63 10 SER A 265 ? ? -96.11 34.87 64 10 ASP A 266 ? ? -155.80 88.21 65 10 TYR A 299 ? ? -113.35 74.67 66 11 SER A 158 ? ? 53.89 -170.17 67 11 GLU A 161 ? ? -150.10 58.16 68 11 SER A 226 ? ? -172.12 -176.38 69 11 ILE A 253 ? ? -159.92 -43.30 70 11 SER A 265 ? ? -96.50 35.43 71 11 ASP A 266 ? ? -157.52 88.46 72 11 TYR A 299 ? ? -113.60 74.04 73 12 SER A 159 ? ? -170.67 131.08 74 12 GLU A 161 ? ? -165.62 -72.35 75 12 SER A 226 ? ? -171.92 -176.45 76 12 ILE A 253 ? ? -160.70 -45.60 77 12 SER A 265 ? ? -95.77 35.15 78 12 ASP A 266 ? ? -155.61 87.65 79 12 TYR A 299 ? ? -113.71 73.94 80 13 GLU A 161 ? ? -156.19 36.17 81 13 SER A 226 ? ? -173.32 -176.39 82 13 ILE A 253 ? ? -160.13 -45.57 83 13 SER A 265 ? ? -96.84 35.22 84 13 ASP A 266 ? ? -156.95 88.69 85 13 TYR A 299 ? ? -113.43 74.53 86 14 SER A 159 ? ? -135.76 -53.87 87 14 ILE A 253 ? ? -160.77 -45.97 88 14 SER A 265 ? ? -95.60 34.74 89 14 ASP A 266 ? ? -154.52 87.56 90 14 TYR A 299 ? ? -113.70 74.13 91 15 SER A 158 ? ? 60.04 -176.15 92 15 SER A 159 ? ? 57.78 -179.85 93 15 GLU A 161 ? ? -169.10 -62.75 94 15 GLN A 163 ? ? -54.68 170.72 95 15 SER A 226 ? ? -171.09 -176.45 96 15 ILE A 253 ? ? -159.61 -44.89 97 15 SER A 265 ? ? -97.49 35.09 98 15 ASP A 266 ? ? -157.46 88.97 99 15 TYR A 299 ? ? -113.42 74.47 100 16 SER A 158 ? ? -109.59 -64.16 101 16 GLU A 161 ? ? -130.64 -56.21 102 16 ILE A 253 ? ? -160.61 -45.37 103 16 SER A 265 ? ? -96.05 34.73 104 16 ASP A 266 ? ? -155.27 87.69 105 16 TYR A 299 ? ? -113.69 73.84 106 17 GLU A 161 ? ? -163.54 41.97 107 17 ILE A 253 ? ? -160.44 -45.87 108 17 SER A 265 ? ? -96.93 35.35 109 17 ASP A 266 ? ? -155.91 87.49 110 17 TYR A 299 ? ? -113.63 74.32 111 17 PRO A 300 ? ? -69.80 99.67 112 18 GLU A 161 ? ? -139.06 -72.70 113 18 SER A 226 ? ? -172.31 -176.41 114 18 ILE A 253 ? ? -159.52 -45.01 115 18 SER A 265 ? ? -96.08 34.35 116 18 ASP A 266 ? ? -155.70 88.22 117 18 TYR A 299 ? ? -113.45 74.39 118 19 GLU A 161 ? ? -129.92 -74.27 119 19 SER A 226 ? ? -174.26 -176.30 120 19 ILE A 253 ? ? -160.70 -45.68 121 19 SER A 265 ? ? -95.91 34.16 122 19 TYR A 299 ? ? -113.61 74.36 123 20 SER A 158 ? ? 59.79 -177.83 124 20 GLU A 161 ? ? -126.19 -73.40 125 20 GLN A 163 ? ? -58.87 177.20 126 20 ILE A 253 ? ? -160.03 -45.42 127 20 SER A 265 ? ? -96.66 35.01 128 20 ASP A 266 ? ? -154.76 87.62 129 20 TYR A 299 ? ? -113.52 74.33 # _pdbx_entry_details.entry_id 8PKZ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 8PKZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8PKZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 13C_15N_PilF159-302_holo solution ? 2 '460 ug/uL [U-100% 15N] PilF159-302, 707 uM c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_PilF159-302_holo solution ? 3 '545 uM [U-15N]-Leu/Val-13C PilF159-302, 818 uM c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_PilF159-302_holo-13C_methylgroups solution 'leucine and valine methylgroups (CD1/CD2) (CG1/CG2) were selectively 13C labelled.' 4 '522 uM [U-15N]-Leu/Val-13C-stereospecific PilF159-302, 627 uM c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_PilF159-302_holo-13C_methylgroups-stereospecific solution ;leucine and valine methylgroups (CD1/CD2) (CG1/CG2) were stereospecifically 13C labelled. For expression a mixture of 10%-13C-labelled and 90%-unlabelled glucose was used to achieve stereospecific labelling. ; 5 '545 uM [U-100% 15N] PilF159-302, 700 uM c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_PilF159-302_unlabelled-c-di-GMP solution ? 6 '420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' PilF159-302_13C_15N-c-di-GMP solution ? 7 '940 uM [U-100% 15N] PilF159-302, 1122 uM [U-13C; U-15N] c-di-GMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_PilF159-302_13C_15N-c-di-GMP solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 PilF159-302 541 ? uM '[U-13C; U-15N]' 1 c-di-GMP 812 ? uM 'natural abundance' 2 PilF159-302 460 ? ug/uL '[U-100% 15N]' 2 c-di-GMP 707 ? uM 'natural abundance' 3 PilF159-302 545 ? uM '[U-15N]-Leu/Val-13C' 3 c-di-GMP 818 ? uM 'natural abundance' 4 PilF159-302 522 ? uM '[U-15N]-Leu/Val-13C-stereospecific' 4 c-di-GMP 627 ? uM 'natural abundance' 5 PilF159-302 545 ? uM '[U-100% 15N]' 5 c-di-GMP 700 ? uM 'natural abundance' 6 PilF159-302 420 ? uM 'natural abundance' 6 c-di-GMP 420 ? uM '[U-13C; U-15N]' 7 PilF159-302 940 ? uM '[U-100% 15N]' 7 c-di-GMP 1122 ? uM '[U-13C; U-15N]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength '200 mM NaCl' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 7 isotropic 2 1 1 '3D HNCO' 7 isotropic 3 1 1 '3D HNCA' 7 isotropic 4 1 1 '3D HN(CA)CO' 7 isotropic 5 1 1 '3D HNCACB' 7 isotropic 6 1 1 '3D HBHA(CO)NH' 2 isotropic 7 1 1 '3D C(CO)NH' 2 isotropic 8 1 1 '3D H(CCO)NH' 2 isotropic 9 1 1 '3D HCCH-COSY' 7 isotropic 10 1 1 '3D HCCH-TOCSY' 1 isotropic 11 1 1 '3D HCCH-TOCSY' 1 isotropic 12 1 1 '2D 1H-13C HSQC aliphatic' 4 isotropic 13 1 1 '2D 1H-13C HSQC aromatic' 2 isotropic 14 1 1 '3D 1H-13C NOESY aliphatic' 4 isotropic 15 1 1 '3D 1H-13C NOESY aromatic' 2 isotropic 16 1 2 '2D 1H-15N HSQC' 2 isotropic 17 1 2 '3D 1H-15N NOESY' 2 isotropic 18 1 4 '2D 1H-13C HSQC aliphatic' 2 isotropic 19 1 3 '2D 1H-13C HSQC aliphatic' 7 isotropic 20 1 3 '3D 1H-13C NOESY aliphatic' 7 isotropic 21 1 5 '2D 1H-31P-SFHMQC' 7 isotropic 22 1 7 '2D HNN-COSY' 7 isotropic 23 1 6 '2D 1H-13C HSQC aliphatic' 5 isotropic 24 1 6 '2D 1H-13C HSQC aromatic' 5 isotropic 25 1 6 '3D 1H-13C NOESY aliphatic' 5 isotropic 26 1 6 '3D 1H-13C NOESY aromatic' 5 isotropic 27 1 6 '2D 1H-15N HSQC NH2 only' 1 isotropic 28 1 6 '3D 1H-15N NOESY NH2 only' 1 isotropic 29 1 6 '2D 1H-13C HSQC aliphatic' 7 isotropic 30 1 6 '2D 1H-13C HSQC aromatic' 7 isotropic 31 1 6 '3D HCCH-COSY' 7 isotropic 32 1 6 ;2D HCN H1'-C1'-N9 ; 7 isotropic 33 1 6 '2D HCN H8-C8-N9' 7 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 8PKZ 'distance geometry' ? 7 8PKZ 'simulated annealing' ? 8 8PKZ 'torsion angle dynamics' ? 9 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 4 'peak picking' CARA ? 'Keller and Wuthrich' 5 'peak picking' 'CcpNmr Analysis' ? CCPN 6 collection TopSpin ? 'Bruker Biospin' 7 refinement CYANA ? 'Guntert, Mumenthaler and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 ILE N N N N 182 ILE CA C N S 183 ILE C C N N 184 ILE O O N N 185 ILE CB C N S 186 ILE CG1 C N N 187 ILE CG2 C N N 188 ILE CD1 C N N 189 ILE OXT O N N 190 ILE H H N N 191 ILE H2 H N N 192 ILE HA H N N 193 ILE HB H N N 194 ILE HG12 H N N 195 ILE HG13 H N N 196 ILE HG21 H N N 197 ILE HG22 H N N 198 ILE HG23 H N N 199 ILE HD11 H N N 200 ILE HD12 H N N 201 ILE HD13 H N N 202 ILE HXT H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 GLN N CA sing N N 110 GLN N H sing N N 111 GLN N H2 sing N N 112 GLN CA C sing N N 113 GLN CA CB sing N N 114 GLN CA HA sing N N 115 GLN C O doub N N 116 GLN C OXT sing N N 117 GLN CB CG sing N N 118 GLN CB HB2 sing N N 119 GLN CB HB3 sing N N 120 GLN CG CD sing N N 121 GLN CG HG2 sing N N 122 GLN CG HG3 sing N N 123 GLN CD OE1 doub N N 124 GLN CD NE2 sing N N 125 GLN NE2 HE21 sing N N 126 GLN NE2 HE22 sing N N 127 GLN OXT HXT sing N N 128 GLU N CA sing N N 129 GLU N H sing N N 130 GLU N H2 sing N N 131 GLU CA C sing N N 132 GLU CA CB sing N N 133 GLU CA HA sing N N 134 GLU C O doub N N 135 GLU C OXT sing N N 136 GLU CB CG sing N N 137 GLU CB HB2 sing N N 138 GLU CB HB3 sing N N 139 GLU CG CD sing N N 140 GLU CG HG2 sing N N 141 GLU CG HG3 sing N N 142 GLU CD OE1 doub N N 143 GLU CD OE2 sing N N 144 GLU OE2 HE2 sing N N 145 GLU OXT HXT sing N N 146 GLY N CA sing N N 147 GLY N H sing N N 148 GLY N H2 sing N N 149 GLY CA C sing N N 150 GLY CA HA2 sing N N 151 GLY CA HA3 sing N N 152 GLY C O doub N N 153 GLY C OXT sing N N 154 GLY OXT HXT sing N N 155 HIS N CA sing N N 156 HIS N H sing N N 157 HIS N H2 sing N N 158 HIS CA C sing N N 159 HIS CA CB sing N N 160 HIS CA HA sing N N 161 HIS C O doub N N 162 HIS C OXT sing N N 163 HIS CB CG sing N N 164 HIS CB HB2 sing N N 165 HIS CB HB3 sing N N 166 HIS CG ND1 sing Y N 167 HIS CG CD2 doub Y N 168 HIS ND1 CE1 doub Y N 169 HIS ND1 HD1 sing N N 170 HIS CD2 NE2 sing Y N 171 HIS CD2 HD2 sing N N 172 HIS CE1 NE2 sing Y N 173 HIS CE1 HE1 sing N N 174 HIS NE2 HE2 sing N N 175 HIS OXT HXT sing N N 176 ILE N CA sing N N 177 ILE N H sing N N 178 ILE N H2 sing N N 179 ILE CA C sing N N 180 ILE CA CB sing N N 181 ILE CA HA sing N N 182 ILE C O doub N N 183 ILE C OXT sing N N 184 ILE CB CG1 sing N N 185 ILE CB CG2 sing N N 186 ILE CB HB sing N N 187 ILE CG1 CD1 sing N N 188 ILE CG1 HG12 sing N N 189 ILE CG1 HG13 sing N N 190 ILE CG2 HG21 sing N N 191 ILE CG2 HG22 sing N N 192 ILE CG2 HG23 sing N N 193 ILE CD1 HD11 sing N N 194 ILE CD1 HD12 sing N N 195 ILE CD1 HD13 sing N N 196 ILE OXT HXT sing N N 197 LEU N CA sing N N 198 LEU N H sing N N 199 LEU N H2 sing N N 200 LEU CA C sing N N 201 LEU CA CB sing N N 202 LEU CA HA sing N N 203 LEU C O doub N N 204 LEU C OXT sing N N 205 LEU CB CG sing N N 206 LEU CB HB2 sing N N 207 LEU CB HB3 sing N N 208 LEU CG CD1 sing N N 209 LEU CG CD2 sing N N 210 LEU CG HG sing N N 211 LEU CD1 HD11 sing N N 212 LEU CD1 HD12 sing N N 213 LEU CD1 HD13 sing N N 214 LEU CD2 HD21 sing N N 215 LEU CD2 HD22 sing N N 216 LEU CD2 HD23 sing N N 217 LEU OXT HXT sing N N 218 LYS N CA sing N N 219 LYS N H sing N N 220 LYS N H2 sing N N 221 LYS CA C sing N N 222 LYS CA CB sing N N 223 LYS CA HA sing N N 224 LYS C O doub N N 225 LYS C OXT sing N N 226 LYS CB CG sing N N 227 LYS CB HB2 sing N N 228 LYS CB HB3 sing N N 229 LYS CG CD sing N N 230 LYS CG HG2 sing N N 231 LYS CG HG3 sing N N 232 LYS CD CE sing N N 233 LYS CD HD2 sing N N 234 LYS CD HD3 sing N N 235 LYS CE NZ sing N N 236 LYS CE HE2 sing N N 237 LYS CE HE3 sing N N 238 LYS NZ HZ1 sing N N 239 LYS NZ HZ2 sing N N 240 LYS NZ HZ3 sing N N 241 LYS OXT HXT sing N N 242 PHE N CA sing N N 243 PHE N H sing N N 244 PHE N H2 sing N N 245 PHE CA C sing N N 246 PHE CA CB sing N N 247 PHE CA HA sing N N 248 PHE C O doub N N 249 PHE C OXT sing N N 250 PHE CB CG sing N N 251 PHE CB HB2 sing N N 252 PHE CB HB3 sing N N 253 PHE CG CD1 doub Y N 254 PHE CG CD2 sing Y N 255 PHE CD1 CE1 sing Y N 256 PHE CD1 HD1 sing N N 257 PHE CD2 CE2 doub Y N 258 PHE CD2 HD2 sing N N 259 PHE CE1 CZ doub Y N 260 PHE CE1 HE1 sing N N 261 PHE CE2 CZ sing Y N 262 PHE CE2 HE2 sing N N 263 PHE CZ HZ sing N N 264 PHE OXT HXT sing N N 265 PRO N CA sing N N 266 PRO N CD sing N N 267 PRO N H sing N N 268 PRO CA C sing N N 269 PRO CA CB sing N N 270 PRO CA HA sing N N 271 PRO C O doub N N 272 PRO C OXT sing N N 273 PRO CB CG sing N N 274 PRO CB HB2 sing N N 275 PRO CB HB3 sing N N 276 PRO CG CD sing N N 277 PRO CG HG2 sing N N 278 PRO CG HG3 sing N N 279 PRO CD HD2 sing N N 280 PRO CD HD3 sing N N 281 PRO OXT HXT sing N N 282 SER N CA sing N N 283 SER N H sing N N 284 SER N H2 sing N N 285 SER CA C sing N N 286 SER CA CB sing N N 287 SER CA HA sing N N 288 SER C O doub N N 289 SER C OXT sing N N 290 SER CB OG sing N N 291 SER CB HB2 sing N N 292 SER CB HB3 sing N N 293 SER OG HG sing N N 294 SER OXT HXT sing N N 295 THR N CA sing N N 296 THR N H sing N N 297 THR N H2 sing N N 298 THR CA C sing N N 299 THR CA CB sing N N 300 THR CA HA sing N N 301 THR C O doub N N 302 THR C OXT sing N N 303 THR CB OG1 sing N N 304 THR CB CG2 sing N N 305 THR CB HB sing N N 306 THR OG1 HG1 sing N N 307 THR CG2 HG21 sing N N 308 THR CG2 HG22 sing N N 309 THR CG2 HG23 sing N N 310 THR OXT HXT sing N N 311 TRP N CA sing N N 312 TRP N H sing N N 313 TRP N H2 sing N N 314 TRP CA C sing N N 315 TRP CA CB sing N N 316 TRP CA HA sing N N 317 TRP C O doub N N 318 TRP C OXT sing N N 319 TRP CB CG sing N N 320 TRP CB HB2 sing N N 321 TRP CB HB3 sing N N 322 TRP CG CD1 doub Y N 323 TRP CG CD2 sing Y N 324 TRP CD1 NE1 sing Y N 325 TRP CD1 HD1 sing N N 326 TRP CD2 CE2 doub Y N 327 TRP CD2 CE3 sing Y N 328 TRP NE1 CE2 sing Y N 329 TRP NE1 HE1 sing N N 330 TRP CE2 CZ2 sing Y N 331 TRP CE3 CZ3 doub Y N 332 TRP CE3 HE3 sing N N 333 TRP CZ2 CH2 doub Y N 334 TRP CZ2 HZ2 sing N N 335 TRP CZ3 CH2 sing Y N 336 TRP CZ3 HZ3 sing N N 337 TRP CH2 HH2 sing N N 338 TRP OXT HXT sing N N 339 TYR N CA sing N N 340 TYR N H sing N N 341 TYR N H2 sing N N 342 TYR CA C sing N N 343 TYR CA CB sing N N 344 TYR CA HA sing N N 345 TYR C O doub N N 346 TYR C OXT sing N N 347 TYR CB CG sing N N 348 TYR CB HB2 sing N N 349 TYR CB HB3 sing N N 350 TYR CG CD1 doub Y N 351 TYR CG CD2 sing Y N 352 TYR CD1 CE1 sing Y N 353 TYR CD1 HD1 sing N N 354 TYR CD2 CE2 doub Y N 355 TYR CD2 HD2 sing N N 356 TYR CE1 CZ doub Y N 357 TYR CE1 HE1 sing N N 358 TYR CE2 CZ sing Y N 359 TYR CE2 HE2 sing N N 360 TYR CZ OH sing N N 361 TYR OH HH sing N N 362 TYR OXT HXT sing N N 363 VAL N CA sing N N 364 VAL N H sing N N 365 VAL N H2 sing N N 366 VAL CA C sing N N 367 VAL CA CB sing N N 368 VAL CA HA sing N N 369 VAL C O doub N N 370 VAL C OXT sing N N 371 VAL CB CG1 sing N N 372 VAL CB CG2 sing N N 373 VAL CB HB sing N N 374 VAL CG1 HG11 sing N N 375 VAL CG1 HG12 sing N N 376 VAL CG1 HG13 sing N N 377 VAL CG2 HG21 sing N N 378 VAL CG2 HG22 sing N N 379 VAL CG2 HG23 sing N N 380 VAL OXT HXT sing N N 381 # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'Wo 901/12-1' _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 5GP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 5GP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE NEO' ? Bruker 600 ? 2 'AVANCE III HD' ? Bruker 700 ? 5 'AVANCE NEO' ? Bruker 900 ? 4 'AVANCE III' ? Bruker 950 ? 7 'AVANCE II' ? Bruker 600 ? # _atom_sites.entry_id 8PKZ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_