HEADER MOTOR PROTEIN 27-JUN-23 8PKZ TITLE NMR SOLUTION STRUCTURE OF PILF-GSPIIB IN THE C-DI-GMP BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-BINDING MOTIF-CONTAINING PROTEIN PILF; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-DI-GMP BINDING DOMAIN OF THE ATPASE ENZYME PILF; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: EACH MOLECULE CONSISTS OF THE PROTEIN BOUND TO C-DI- COMPND 7 GMP (RESIDUES 147-148). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 GENE: PILF, TT_C1622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PILT CLASS, NMR-STRUCTURE, LIGAND BINDING, GSPII, MOTOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NEISSNER,J.WOEHNERT REVDAT 1 10-JUL-24 8PKZ 0 JRNL AUTH K.NEISSNER,J.WOEHNERT JRNL TITL NMR SOLUTION STRUCTURE OF GSPIIB OF THERMUS THERMOPHILUS IN JRNL TITL 2 THE C-DI-GMP BOUND STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131213. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 541 UM [U-13C; U-15N] PILF159 REMARK 210 -302, 812 UM C-DI-GMP, 90% H2O/10% D2O; 460 UG/UL [U-100% 15N] REMARK 210 PILF159-302, 707 UM C-DI-GMP, 90% H2O/10% D2O; 545 UM [U-15N]- REMARK 210 LEU/VAL-13C PILF159-302, 818 UM C-DI-GMP, 90% H2O/10% D2O; 522 REMARK 210 UM [U-15N]-LEU/VAL-13C-STEREOSPECIFIC PILF159-302, 627 UM C-DI- REMARK 210 GMP, 90% H2O/10% D2O; 545 UM [U-100% 15N] PILF159-302, 700 UM C- REMARK 210 DI-GMP, 90% H2O/10% D2O; 420 UM PILF159-302, 420 UM [U-13C; U- REMARK 210 15N] C-DI-GMP, 90% H2O/10% D2O; 940 UM [U-100% 15N] PILF159-302, REMARK 210 1122 UM [U-13C; U-15N] C-DI-GMP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CA)CO; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-COSY; 3D HCCH-TOCSY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 2D 1H- REMARK 210 31P-SFHMQC; 2D HNN-COSY; 2D 1H- REMARK 210 15N HSQC NH2 ONLY; 3D 1H-15N REMARK 210 NOESY NH2 ONLY; 2D HCN H1'-C1'- REMARK 210 N9; 2D HCN H8-C8-N9 REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 900 MHZ; 950 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA, CCPNMR ANALYSIS, REMARK 210 TOPSPIN REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 226 -176.37 -171.34 REMARK 500 1 ILE A 253 -45.60 -160.45 REMARK 500 1 SER A 265 35.04 -96.41 REMARK 500 1 ASP A 266 88.49 -157.03 REMARK 500 1 TYR A 299 74.41 -113.42 REMARK 500 2 SER A 158 62.18 60.69 REMARK 500 2 GLU A 161 -64.72 -146.06 REMARK 500 2 SER A 226 -176.43 -170.29 REMARK 500 2 ILE A 253 -41.21 -159.37 REMARK 500 2 SER A 265 35.07 -96.01 REMARK 500 2 ASP A 266 88.46 -156.81 REMARK 500 2 TYR A 299 74.23 -113.52 REMARK 500 3 GLU A 161 -61.70 -136.06 REMARK 500 3 SER A 226 -176.38 -171.52 REMARK 500 3 ILE A 253 -45.40 -160.24 REMARK 500 3 SER A 265 35.29 -95.67 REMARK 500 3 ASP A 266 87.96 -156.68 REMARK 500 3 TYR A 299 74.44 -113.39 REMARK 500 3 PRO A 300 99.55 -69.70 REMARK 500 4 GLU A 161 46.27 -154.29 REMARK 500 4 SER A 226 -176.33 -172.12 REMARK 500 4 ILE A 253 -45.63 -160.17 REMARK 500 4 SER A 265 35.28 -95.53 REMARK 500 4 ASP A 266 87.46 -155.98 REMARK 500 4 TYR A 299 74.35 -113.57 REMARK 500 5 SER A 158 85.82 53.87 REMARK 500 5 GLU A 161 -74.35 -94.89 REMARK 500 5 SER A 226 -176.38 -171.55 REMARK 500 5 ILE A 253 -45.39 -160.17 REMARK 500 5 SER A 265 35.04 -95.70 REMARK 500 5 ASP A 266 87.69 -155.10 REMARK 500 5 TYR A 299 74.06 -113.58 REMARK 500 6 SER A 159 -178.49 -59.15 REMARK 500 6 GLU A 161 41.01 -105.52 REMARK 500 6 SER A 226 -176.38 -171.15 REMARK 500 6 ILE A 253 -45.30 -159.85 REMARK 500 6 SER A 265 35.04 -97.38 REMARK 500 6 ASP A 266 88.71 -156.90 REMARK 500 6 TYR A 299 74.54 -113.45 REMARK 500 7 SER A 158 173.73 60.27 REMARK 500 7 SER A 226 -176.32 -172.71 REMARK 500 7 ILE A 253 -45.56 -160.17 REMARK 500 7 SER A 265 35.53 -95.59 REMARK 500 7 ASP A 266 87.63 -156.53 REMARK 500 7 TYR A 299 74.26 -113.47 REMARK 500 8 SER A 159 -41.45 -135.41 REMARK 500 8 GLU A 161 -74.28 -165.46 REMARK 500 8 SER A 226 -176.40 -172.99 REMARK 500 8 ILE A 253 -45.29 -159.93 REMARK 500 8 SER A 265 35.08 -95.69 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27853 RELATED DB: BMRB DBREF 8PKZ A 157 302 UNP Q72H73 Q72H73_THET2 157 302 SEQADV 8PKZ GLY A 157 UNP Q72H73 PRO 157 ENGINEERED MUTATION SEQADV 8PKZ SER A 158 UNP Q72H73 PRO 158 ENGINEERED MUTATION SEQRES 1 A 146 GLY SER SER GLY GLU GLY GLN LYS ASP LEU LYS LEU GLY SEQRES 2 A 146 GLU LEU LEU LEU GLN LYS GLY TRP ILE SER ARG GLU ALA SEQRES 3 A 146 LEU GLU GLU ALA LEU VAL GLU GLN GLU LYS THR GLY ASP SEQRES 4 A 146 LEU LEU GLY ARG ILE LEU VAL ARG LYS GLY LEU PRO GLU SEQRES 5 A 146 GLU ALA LEU TYR ARG ALA LEU ALA GLU GLN LYS GLY LEU SEQRES 6 A 146 GLU PHE LEU GLU SER THR GLU GLY ILE VAL PRO ASP PRO SEQRES 7 A 146 SER ALA ALA LEU LEU LEU LEU ARG SER ASP ALA LEU ARG SEQRES 8 A 146 TYR GLY ALA VAL PRO ILE GLY PHE GLN ASN GLY GLU VAL SEQRES 9 A 146 GLU VAL VAL LEU SER ASP PRO ARG HIS LYS GLU ALA VAL SEQRES 10 A 146 ALA GLN LEU LEU ASN ARG PRO ALA ARG PHE TYR LEU ALA SEQRES 11 A 146 LEU PRO GLN ALA TRP GLU GLU LEU PHE ARG ARG ALA TYR SEQRES 12 A 146 PRO GLN LYS HET 5GP A 336 34 HET 5GP A 337 34 HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 5GP 2(C10 H14 N5 O8 P) HELIX 1 AA1 LYS A 167 GLY A 176 1 10 HELIX 2 AA2 SER A 179 GLY A 194 1 16 HELIX 3 AA3 LEU A 196 VAL A 202 1 7 HELIX 4 AA4 ARG A 203 GLY A 205 5 3 HELIX 5 AA5 PRO A 207 LYS A 219 1 13 HELIX 6 AA6 ASP A 233 LEU A 238 1 6 HELIX 7 AA7 LEU A 241 GLY A 249 1 9 HELIX 8 AA8 ASP A 266 ARG A 268 5 3 HELIX 9 AA9 HIS A 269 ASN A 278 1 10 HELIX 10 AB1 LEU A 287 TYR A 299 1 13 SHEET 1 AA1 4 GLU A 222 PHE A 223 0 SHEET 2 AA1 4 ALA A 281 LEU A 285 1 O LEU A 285 N GLU A 222 SHEET 3 AA1 4 GLU A 259 LEU A 264 1 N VAL A 262 O ARG A 282 SHEET 4 AA1 4 ALA A 250 GLN A 256 -1 N GLY A 254 O GLU A 261 LINK P 5GP A 336 O3' 5GP A 337 1555 1555 1.59 LINK O3' 5GP A 336 P 5GP A 337 1555 1555 1.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1