HEADER TRANSCRIPTION 29-JUN-23 8PMV TITLE TRANSCRIPTION FACTOR BARHL2 BOUND TO TAAGC DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BARH-LIKE 2 HOMEOBOX PROTEIN; COMPND 3 CHAIN: A, D, G, J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: B, E, H, K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA; COMPND 11 CHAIN: C, F, I, L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BARHL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET20A-SBP; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS HOMEOBOX TRANSCRIPTION FACTOR BARHL2, DNA-BINDING DOMAIN, PROTEIN-DNA KEYWDS 2 COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE REVDAT 1 10-JUL-24 8PMV 0 JRNL AUTH E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE JRNL TITL TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2041 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.4240 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2085 REMARK 3 NUCLEIC ACID ATOMS : 1942 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.06000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.690 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4417 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3128 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6180 ; 2.170 ; 1.708 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7213 ; 1.123 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 8.059 ; 5.653 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;28.625 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;19.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.490 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.172 ; 0.239 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3555 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 949 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 968 ; 1.076 ; 2.265 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 967 ; 1.072 ; 2.265 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1203 ; 1.774 ; 3.389 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1204 ; 1.774 ; 3.390 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3449 ; 1.178 ; 2.242 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3449 ; 1.178 ; 2.242 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4978 ; 1.860 ; 3.363 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15015 ; 4.694 ;57.776 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14999 ; 4.691 ;57.748 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 12 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A D 1844 0.13 0.05 REMARK 3 2 A G 1919 0.12 0.05 REMARK 3 3 A J 1817 0.12 0.05 REMARK 3 4 B E 2233 0.06 0.05 REMARK 3 5 B H 2298 0.03 0.05 REMARK 3 6 B K 2235 0.08 0.05 REMARK 3 7 D G 1857 0.14 0.05 REMARK 3 8 D J 1851 0.13 0.05 REMARK 3 9 E H 2243 0.07 0.05 REMARK 3 10 E K 2257 0.04 0.05 REMARK 3 11 G J 1879 0.10 0.05 REMARK 3 12 H K 2239 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 13.203 -3.226 7.233 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.4580 REMARK 3 T33: 0.4621 T12: -0.0195 REMARK 3 T13: -0.0675 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 4.0784 L22: 7.5506 REMARK 3 L33: 6.4355 L12: -2.0392 REMARK 3 L13: -0.7521 L23: -0.5334 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.0217 S13: 0.0858 REMARK 3 S21: -0.3606 S22: 0.0038 S23: -0.0181 REMARK 3 S31: 0.3981 S32: 0.1841 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 RESIDUE RANGE : C 13 C 24 REMARK 3 ORIGIN FOR THE GROUP (A): 12.302 4.719 17.239 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.5713 REMARK 3 T33: 0.6242 T12: 0.0512 REMARK 3 T13: -0.0739 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 5.3301 L22: 2.8462 REMARK 3 L33: 4.3584 L12: -0.7682 REMARK 3 L13: 1.0605 L23: -0.5353 REMARK 3 S TENSOR REMARK 3 S11: -0.4087 S12: -0.6911 S13: 0.4421 REMARK 3 S21: 0.4103 S22: 0.2290 S23: 0.0640 REMARK 3 S31: -0.0700 S32: 0.0425 S33: 0.1797 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 232 D 291 REMARK 3 ORIGIN FOR THE GROUP (A): 17.665 -27.732 11.801 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.4618 REMARK 3 T33: 0.3967 T12: 0.1329 REMARK 3 T13: -0.0488 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 4.5700 L22: 5.7884 REMARK 3 L33: 4.9369 L12: 0.6716 REMARK 3 L13: 0.9079 L23: -0.2087 REMARK 3 S TENSOR REMARK 3 S11: 0.1242 S12: 0.1989 S13: -0.2514 REMARK 3 S21: -0.3464 S22: -0.1379 S23: 0.2421 REMARK 3 S31: 0.5872 S32: 0.1684 S33: 0.0137 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 12 REMARK 3 RESIDUE RANGE : F 13 F 24 REMARK 3 ORIGIN FOR THE GROUP (A): 29.531 -25.753 17.864 REMARK 3 T TENSOR REMARK 3 T11: 0.1854 T22: 0.6536 REMARK 3 T33: 0.4358 T12: 0.1206 REMARK 3 T13: -0.0032 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 4.6052 L22: 4.8131 REMARK 3 L33: 6.4160 L12: -0.1625 REMARK 3 L13: -0.9459 L23: 0.5210 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.0063 S13: -0.0205 REMARK 3 S21: -0.0195 S22: -0.1442 S23: -0.4704 REMARK 3 S31: 0.2147 S32: 0.8982 S33: 0.0502 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 231 G 292 REMARK 3 ORIGIN FOR THE GROUP (A): 33.228 18.697 -0.749 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.4474 REMARK 3 T33: 0.5710 T12: 0.0239 REMARK 3 T13: -0.0501 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 2.4732 L22: 6.8201 REMARK 3 L33: 5.2976 L12: 1.5711 REMARK 3 L13: -0.9559 L23: 0.4183 REMARK 3 S TENSOR REMARK 3 S11: 0.1591 S12: -0.1117 S13: -0.0172 REMARK 3 S21: 0.0540 S22: 0.0381 S23: -0.2015 REMARK 3 S31: -0.3037 S32: 0.0141 S33: -0.1972 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 12 REMARK 3 RESIDUE RANGE : I 13 I 24 REMARK 3 ORIGIN FOR THE GROUP (A): 32.237 10.171 -10.423 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.4257 REMARK 3 T33: 0.5697 T12: -0.0185 REMARK 3 T13: -0.0734 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 6.9766 L22: 2.4945 REMARK 3 L33: 3.1301 L12: 0.4985 REMARK 3 L13: -1.0624 L23: -0.7288 REMARK 3 S TENSOR REMARK 3 S11: -0.3062 S12: 0.5882 S13: -0.4785 REMARK 3 S21: -0.2677 S22: 0.1767 S23: -0.0458 REMARK 3 S31: 0.1981 S32: 0.0210 S33: 0.1294 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 232 J 290 REMARK 3 ORIGIN FOR THE GROUP (A): 6.878 -17.603 -19.891 REMARK 3 T TENSOR REMARK 3 T11: 0.5001 T22: 0.6581 REMARK 3 T33: 0.6154 T12: 0.0618 REMARK 3 T13: -0.0874 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 4.9734 L22: 7.4015 REMARK 3 L33: 4.4071 L12: -1.8496 REMARK 3 L13: 1.3673 L23: -1.6577 REMARK 3 S TENSOR REMARK 3 S11: -0.2912 S12: 0.0221 S13: 0.6296 REMARK 3 S21: -0.4013 S22: 0.2052 S23: -0.0724 REMARK 3 S31: -0.6575 S32: -0.4070 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 12 REMARK 3 RESIDUE RANGE : L 13 L 24 REMARK 3 ORIGIN FOR THE GROUP (A): 10.518 -30.162 -16.576 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.5169 REMARK 3 T33: 0.3914 T12: 0.0231 REMARK 3 T13: -0.0088 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.9478 L22: 3.9082 REMARK 3 L33: 8.1295 L12: -0.6379 REMARK 3 L13: -2.6686 L23: 0.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.0293 S13: -0.1160 REMARK 3 S21: -0.2708 S22: 0.0384 S23: 0.0342 REMARK 3 S31: 0.1779 S32: -0.1906 S33: 0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.885600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38886 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 5.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM MALONATE, SODIUM REMARK 280 ACETATE, PH 4.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.88650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS D 231 REMARK 465 ALA D 292 REMARK 465 LYS J 231 REMARK 465 THR J 291 REMARK 465 ALA J 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 11 C4' REMARK 470 DC E 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5' DC F 18 O HOH F 101 1.76 REMARK 500 O HOH B 102 O HOH B 109 1.80 REMARK 500 NE2 GLN G 290 O HOH G 301 2.12 REMARK 500 NH2 ARG D 236 O2 DT E 4 2.14 REMARK 500 NZ LYS D 288 OP2 DG F 17 2.14 REMARK 500 NH2 ARG J 236 O2 DT K 4 2.14 REMARK 500 OE1 GLU A 248 O HOH A 301 2.16 REMARK 500 NH1 ARG D 262 OP1 DA F 14 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 280 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DT B 4 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT B 12 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DG C 17 O3' - P - OP1 ANGL. DEV. = 8.4 DEGREES REMARK 500 DC C 18 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 23 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR D 280 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 DT E 4 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC E 8 C3' - O3' - P ANGL. DEV. = -8.4 DEGREES REMARK 500 DG E 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC F 16 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC F 18 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 23 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC H 1 O4' - C1' - N1 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC H 3 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT H 4 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG H 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I 18 P - O5' - C5' ANGL. DEV. = -9.8 DEGREES REMARK 500 DC I 18 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA I 21 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I 23 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 TYR J 280 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 DT K 4 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC K 8 C3' - O3' - P ANGL. DEV. = -8.4 DEGREES REMARK 500 DG K 10 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC L 16 C3' - O3' - P ANGL. DEV. = -8.2 DEGREES REMARK 500 DC L 18 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA L 21 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG L 22 O3' - P - O5' ANGL. DEV. = -12.2 DEGREES REMARK 500 DC L 23 O3' - P - OP2 ANGL. DEV. = 7.9 DEGREES REMARK 500 DG L 24 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN D 290 33.37 79.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 282 -11.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 106 DISTANCE = 9.86 ANGSTROMS REMARK 525 HOH I 111 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH I 112 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH I 113 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH I 114 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH I 115 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH I 116 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH I 117 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH I 118 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH I 119 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH I 120 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH I 121 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH I 122 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH I 123 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH J 312 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH J 313 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH J 314 DISTANCE = 8.82 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PM5 RELATED DB: PDB REMARK 900 8PM5 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PM7 RELATED DB: PDB REMARK 900 8PM7 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PMC RELATED DB: PDB REMARK 900 8PMC CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PMF RELATED DB: PDB REMARK 900 8PMF CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PMN RELATED DB: PDB REMARK 900 8PMN CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PN4 RELATED DB: PDB REMARK 900 8PN4 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PNA RELATED DB: PDB REMARK 900 8PNA CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PNC RELATED DB: PDB REMARK 900 8PNC CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA DBREF 8PMV A 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMV B 1 12 PDB 8PMV 8PMV 1 12 DBREF 8PMV C 13 24 PDB 8PMV 8PMV 13 24 DBREF 8PMV D 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMV E 1 12 PDB 8PMV 8PMV 1 12 DBREF 8PMV F 13 24 PDB 8PMV 8PMV 13 24 DBREF 8PMV G 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMV H 1 12 PDB 8PMV 8PMV 1 12 DBREF 8PMV I 13 24 PDB 8PMV 8PMV 13 24 DBREF 8PMV J 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMV K 1 12 PDB 8PMV 8PMV 1 12 DBREF 8PMV L 13 24 PDB 8PMV 8PMV 13 24 SEQRES 1 A 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 A 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 A 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 A 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 A 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 B 12 DC DG DC DT DA DA DG DC DG DG DT DT SEQRES 1 C 12 DA DA DC DC DG DC DT DT DA DG DC DG SEQRES 1 D 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 D 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 D 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 D 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 D 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 E 12 DC DG DC DT DA DA DG DC DG DG DT DT SEQRES 1 F 12 DA DA DC DC DG DC DT DT DA DG DC DG SEQRES 1 G 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 G 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 G 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 G 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 G 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 H 12 DC DG DC DT DA DA DG DC DG DG DT DT SEQRES 1 I 12 DA DA DC DC DG DC DT DT DA DG DC DG SEQRES 1 J 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 J 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 J 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 J 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 J 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 K 12 DC DG DC DT DA DA DG DC DG DG DT DT SEQRES 1 L 12 DA DA DC DC DG DC DT DT DA DG DC DG FORMUL 13 HOH *121(H2 O) HELIX 1 AA1 SER A 240 GLN A 254 1 15 HELIX 2 AA2 SER A 258 LEU A 269 1 12 HELIX 3 AA3 THR A 272 ALA A 292 1 21 HELIX 4 AA4 SER D 240 GLN D 254 1 15 HELIX 5 AA5 SER D 258 LEU D 269 1 12 HELIX 6 AA6 THR D 272 LYS D 288 1 17 HELIX 7 AA7 SER G 240 GLN G 254 1 15 HELIX 8 AA8 SER G 258 LEU G 269 1 12 HELIX 9 AA9 THR G 272 GLN G 290 1 19 HELIX 10 AB1 SER J 240 GLN J 254 1 15 HELIX 11 AB2 SER J 258 LEU J 269 1 12 HELIX 12 AB3 THR J 272 GLN J 290 1 19 CRYST1 39.080 133.773 64.990 90.00 92.74 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025589 0.000000 0.001225 0.00000 SCALE2 0.000000 0.007475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015405 0.00000