HEADER LIGASE 05-JUL-23 8POR TITLE CRYSTAL STRUCTURE OF WOLBACHIA LEUCYL-TRNA SYNTHETASE EDITING DOMAIN TITLE 2 BOUND TO CMPD6-AMP ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 5 EC: 6.1.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUE 30 (CYSTEINE 243) IS A S-MERCAPTOCYSTEINE COMPND 9 (DENOTED CSS IN PDB ENTRIES) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WOLBACHIA ENDOSYMBIONT STRAIN TRS OF BRUGIA SOURCE 3 MALAYI; SOURCE 4 ORGANISM_TAXID: 292805; SOURCE 5 GENE: LEUS, WBM0605; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-M11 KEYWDS LEUCINE TRNA LIGASE, ATP BINDING PROTEIN, TRNA AMINOACYLATION FOR KEYWDS 2 PROTEIN TRANSLATION, CYTOSOLIC REACTION CATALYSED: ATP + L-LEUCINE + KEYWDS 3 TRNA(LEU) = AMP + DIPHOSPHATE + L-LEUCYL-TRNA(LEU), LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PALENCIA,M.LUKARSKA REVDAT 2 24-JUL-24 8POR 1 JRNL REVDAT 1 12-JUN-24 8POR 0 JRNL AUTH G.HOFFMANN,M.LUKARSKA,R.H.CLARE,E.K.G.MASTERS,K.L.JOHNSTON, JRNL AUTH 2 L.FORD,J.D.TURNER,S.A.WARD,M.J.TAYLOR,M.R.JENSEN,A.PALENCIA JRNL TITL TARGETING A MICROBIOTA WOLBACHIAN AMINOACYL-TRNA SYNTHETASE JRNL TITL 2 TO BLOCK ITS PATHOGENIC HOST. JRNL REF SCI ADV V. 10 O1453 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 38985862 JRNL DOI 10.1126/SCIADV.ADO1453 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1281 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : 6.68000 REMARK 3 B12 (A**2) : -1.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1433 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1366 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1943 ; 1.869 ; 1.706 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3192 ; 1.296 ; 1.628 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 7.160 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;29.619 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;14.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.219 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1519 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 257 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 666 ; 3.832 ; 4.532 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 665 ; 3.826 ;15.944 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 832 ; 5.143 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 833 ; 5.169 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 766 ; 5.075 ; 3.958 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 767 ; 5.072 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1106 ; 6.431 ;45.991 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1528 ; 7.692 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1507 ; 7.576 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1427 ; 3.055 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8POR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 109.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5; 0.2M LISO4; 31% W/V REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.53000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.06000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.79500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.32500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.26500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 20.53000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 41.06000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.32500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 30.79500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 10.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 593 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 216 REMARK 465 ALA A 217 REMARK 465 MET A 218 REMARK 465 GLY A 219 REMARK 465 LYS A 220 REMARK 465 SER A 221 REMARK 465 ARG A 350 REMARK 465 LEU A 351 REMARK 465 GLY A 352 REMARK 465 ILE A 353 REMARK 465 GLU A 354 REMARK 465 GLU A 355 REMARK 465 TYR A 356 REMARK 465 THR A 357 REMARK 465 ASN A 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 606 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 242 CB - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 317 -118.53 52.16 REMARK 500 GLU A 366 -116.93 50.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 634 DISTANCE = 6.97 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8POQ RELATED DB: PDB DBREF 8POR A 219 394 UNP Q5GS31 SYL_WOLTR 219 418 SEQADV 8POR GLY A 216 UNP Q5GS31 EXPRESSION TAG SEQADV 8POR ALA A 217 UNP Q5GS31 EXPRESSION TAG SEQADV 8POR MET A 218 UNP Q5GS31 EXPRESSION TAG SEQADV 8POR A UNP Q5GS31 ILE 354 DELETION SEQADV 8POR A UNP Q5GS31 PRO 355 DELETION SEQADV 8POR A UNP Q5GS31 ALA 356 DELETION SEQADV 8POR A UNP Q5GS31 CYS 357 DELETION SEQADV 8POR A UNP Q5GS31 ASP 358 DELETION SEQADV 8POR A UNP Q5GS31 GLN 359 DELETION SEQADV 8POR A UNP Q5GS31 GLY 360 DELETION SEQADV 8POR A UNP Q5GS31 SER 361 DELETION SEQADV 8POR A UNP Q5GS31 TYR 362 DELETION SEQADV 8POR A UNP Q5GS31 THR 363 DELETION SEQADV 8POR A UNP Q5GS31 GLY 364 DELETION SEQADV 8POR A UNP Q5GS31 SER 365 DELETION SEQADV 8POR A UNP Q5GS31 GLN 366 DELETION SEQADV 8POR A UNP Q5GS31 CYS 367 DELETION SEQADV 8POR A UNP Q5GS31 GLN 368 DELETION SEQADV 8POR A UNP Q5GS31 ALA 369 DELETION SEQADV 8POR A UNP Q5GS31 THR 370 DELETION SEQADV 8POR A UNP Q5GS31 ARG 371 DELETION SEQADV 8POR A UNP Q5GS31 MET 372 DELETION SEQADV 8POR A UNP Q5GS31 ALA 373 DELETION SEQADV 8POR A UNP Q5GS31 ASP 374 DELETION SEQADV 8POR A UNP Q5GS31 GLY 375 DELETION SEQADV 8POR A UNP Q5GS31 LEU 376 DELETION SEQADV 8POR A UNP Q5GS31 ASN 377 DELETION SEQRES 1 A 179 GLY ALA MET GLY LYS SER GLU GLY VAL THR ILE GLU PHE SEQRES 2 A 179 LYS ILE VAL GLY LEU ASN LYS LYS LEU LYS VAL PHE THR SEQRES 3 A 179 THR CSS PRO HIS THR LEU PHE GLY ALA SER PHE CYS ALA SEQRES 4 A 179 VAL ALA ILE GLU HIS PRO ILE VAL GLN ASP LEU MET SER SEQRES 5 A 179 LYS GLU ILE GLN ASP LEU ILE SER SER ILE LYS ILE GLN SEQRES 6 A 179 GLY LYS ASN ASN GLU LYS VAL GLY ILE TYR THR GLY LEU SEQRES 7 A 179 ASN VAL LYS HIS PRO PHE LEU ASP LYS GLU LEU PRO LEU SEQRES 8 A 179 TYR VAL ALA ASN PHE VAL LEU MET GLU TYR ARG GLU GLY SEQRES 9 A 179 ALA ILE PHE GLY CYS PRO ALA HIS ASP GLN ARG ASP PHE SEQRES 10 A 179 GLU PHE ALA GLN GLU TYR ASP LEU PRO ILE ILE PRO VAL SEQRES 11 A 179 ILE SER SER ALA ARG LEU GLY ILE GLU GLU TYR THR ASN SEQRES 12 A 179 ASN SER ILE MET PHE ASN SER GLU PHE LEU ASN GLY LEU SEQRES 13 A 179 THR VAL SER GLU ALA ARG LYS VAL ILE VAL GLU LYS LEU SEQRES 14 A 179 GLU GLU LYS GLY ILE GLY LYS LYS THR ILE MODRES 8POR CSS A 243 CYS MODIFIED RESIDUE HET CSS A 243 7 HET SO4 A 401 5 HET EYT A 402 46 HET EDO A 403 4 HET PE4 A 404 22 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM SO4 SULFATE ION HETNAM EYT [(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(AMINOMETHYL)-8- HETNAM 2 EYT (6-AMINOPURIN-9-YL)-2'-BROMANYL-5'-[3-OXIDANYLIDENE-3- HETNAM 3 EYT (1,3-THIAZOL-2-YLAMINO)PROPOXY]SPIRO[2,4,7-TRIOXA-3- HETNAM 4 EYT BORANUIDABICYCLO[3.3.0]OCTANE-3,7'-8-OXA-7- HETNAM 5 EYT BORANUIDABICYCLO[4.3.0]NONA-1(6),2,4-TRIENE]-6- HETNAM 6 EYT YL]METHYL DIHYDROGEN PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN EDO ETHYLENE GLYCOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 SO4 O4 S 2- FORMUL 3 EYT C24 H26 B BR N8 O10 P S 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 PE4 C16 H34 O8 FORMUL 6 HOH *134(H2 O) HELIX 1 AA1 CSS A 243 ALA A 250 5 8 HELIX 2 AA2 PRO A 260 MET A 266 1 7 HELIX 3 AA3 SER A 267 ILE A 277 1 11 HELIX 4 AA4 ASP A 328 ASP A 339 1 12 HELIX 5 AA5 SER A 365 ASN A 369 5 5 HELIX 6 AA6 THR A 372 LYS A 387 1 16 SHEET 1 AA1 3 LYS A 236 THR A 241 0 SHEET 2 AA1 3 VAL A 224 LYS A 229 -1 N PHE A 228 O LEU A 237 SHEET 3 AA1 3 GLY A 390 LYS A 392 -1 O LYS A 391 N THR A 225 SHEET 1 AA2 4 GLY A 288 LYS A 296 0 SHEET 2 AA2 4 GLU A 303 ALA A 309 -1 O LEU A 304 N VAL A 295 SHEET 3 AA2 4 PHE A 252 VAL A 255 1 N CYS A 253 O TYR A 307 SHEET 4 AA2 4 ALA A 320 GLY A 323 -1 O GLY A 323 N PHE A 252 LINK C THR A 242 N CSS A 243 1555 1555 1.34 LINK C CSS A 243 N PRO A 244 1555 1555 1.35 CRYST1 126.630 126.630 61.590 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007897 0.004559 0.000000 0.00000 SCALE2 0.000000 0.009119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016236 0.00000