HEADER IMMUNOSUPPRESSANT 07-JUL-23 8PPM TITLE IL-12RB1 NEUTRALIZING FAB4, CRYSTAL KAPPA VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB4 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDEUS [225-] (GHHHHHH) ENCODE CLONING SCAR AND COMPND 6 PURIFICATION TAG. TAG WAS NOT REMOVED PRIOR TO CRYSTALLIZATION.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAB4 LIGHT CHAIN, CRYSTAL KAPPA VARIANT; COMPND 9 CHAIN: L; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS X MUS MUSCULUS HYBRID CELL LINE; SOURCE 3 ORGANISM_TAXID: 1131344; SOURCE 4 CELL_LINE: HEK293S MGAT-/-; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS X MUS MUSCULUS HYBRID CELL LINE; SOURCE 11 ORGANISM_TAXID: 1131344; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293S MGAT-/-; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS ANTIBODY, FAB FRAGMENT, DESIGNED CRYSTAL CONTACT, IMMUNOSUPPRESSANT EXPDTA X-RAY DIFFRACTION AUTHOR Y.BLOCH,S.N.SAVVIDES REVDAT 2 01-MAY-24 8PPM 1 JRNL REVDAT 1 07-FEB-24 8PPM 0 JRNL AUTH Y.BLOCH,J.FELIX,R.MERCERON,M.PROVOST,R.A.SYMAKANI, JRNL AUTH 2 R.DE BACKER,E.LAMBERT,A.R.MEHDIPOUR,S.N.SAVVIDES JRNL TITL STRUCTURES OF COMPLETE EXTRACELLULAR RECEPTOR ASSEMBLIES JRNL TITL 2 MEDIATED BY IL-12 AND IL-23. JRNL REF NAT.STRUCT.MOL.BIOL. V. 31 591 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 38287195 JRNL DOI 10.1038/S41594-023-01190-6 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 31735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.320 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.4100 - 4.8900 1.00 2370 156 0.1762 0.2092 REMARK 3 2 4.8900 - 3.8800 1.00 2226 153 0.1468 0.1568 REMARK 3 3 3.8800 - 3.3900 1.00 2225 154 0.1843 0.1889 REMARK 3 4 3.3900 - 3.0800 1.00 2190 149 0.2069 0.2402 REMARK 3 5 3.0800 - 2.8600 1.00 2180 142 0.2169 0.2626 REMARK 3 6 2.8600 - 2.6900 1.00 2188 146 0.2171 0.2534 REMARK 3 7 2.6900 - 2.5600 1.00 2171 146 0.2203 0.2833 REMARK 3 8 2.5600 - 2.4500 1.00 2138 144 0.2356 0.2722 REMARK 3 9 2.4500 - 2.3500 1.00 2179 145 0.2383 0.2672 REMARK 3 10 2.3500 - 2.2700 1.00 2146 148 0.2196 0.2516 REMARK 3 11 2.2700 - 2.2000 1.00 2186 147 0.2224 0.2483 REMARK 3 12 2.2000 - 2.1400 1.00 2132 143 0.2215 0.2943 REMARK 3 13 2.1400 - 2.0800 0.98 2077 144 0.2469 0.2734 REMARK 3 14 2.0800 - 2.0300 0.61 1322 88 0.2836 0.3707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.675 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3366 REMARK 3 ANGLE : 0.485 4581 REMARK 3 CHIRALITY : 0.042 513 REMARK 3 PLANARITY : 0.004 586 REMARK 3 DIHEDRAL : 11.018 1197 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2671 2.5637 5.8058 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.3246 REMARK 3 T33: 0.2591 T12: 0.0177 REMARK 3 T13: 0.0490 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.8709 L22: 4.6931 REMARK 3 L33: 2.6644 L12: 0.2908 REMARK 3 L13: -0.7857 L23: 0.8486 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: -0.2066 S13: -0.0326 REMARK 3 S21: -0.0069 S22: -0.0668 S23: 0.0287 REMARK 3 S31: 0.1253 S32: 0.2641 S33: -0.0514 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7936 30.3590 26.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2707 REMARK 3 T33: 0.3432 T12: -0.0328 REMARK 3 T13: -0.0231 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.5041 L22: 4.1005 REMARK 3 L33: 4.8040 L12: 2.9294 REMARK 3 L13: -0.7497 L23: -1.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.2003 S12: -0.2726 S13: 0.6646 REMARK 3 S21: -0.0145 S22: 0.1706 S23: -0.1489 REMARK 3 S31: -0.2260 S32: -0.0424 S33: -0.5036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 154 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5787 24.8876 29.2472 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2750 REMARK 3 T33: 0.3380 T12: -0.0164 REMARK 3 T13: -0.0034 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 2.6599 L22: 1.8473 REMARK 3 L33: 3.9251 L12: 0.0868 REMARK 3 L13: -1.6085 L23: 0.5481 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0917 S13: -0.0011 REMARK 3 S21: -0.0206 S22: 0.0283 S23: -0.2097 REMARK 3 S31: -0.0633 S32: 0.1210 S33: -0.1005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 90) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8254 -1.6643 7.8150 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.3841 REMARK 3 T33: 0.3920 T12: -0.1103 REMARK 3 T13: -0.0105 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 4.4972 L22: 3.8624 REMARK 3 L33: 3.0616 L12: -0.7657 REMARK 3 L13: -1.3190 L23: 0.2480 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.1475 S13: -0.2945 REMARK 3 S21: -0.1229 S22: -0.1159 S23: 0.4605 REMARK 3 S31: 0.3515 S32: -0.4007 S33: 0.0895 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3114 17.8331 14.3904 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.2979 REMARK 3 T33: 0.2376 T12: 0.0164 REMARK 3 T13: -0.0324 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.5759 L22: 3.1095 REMARK 3 L33: 1.9232 L12: -0.1647 REMARK 3 L13: -0.0633 L23: 1.8903 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0379 S13: 0.0887 REMARK 3 S21: -0.2181 S22: -0.1173 S23: 0.1642 REMARK 3 S31: -0.0030 S32: -0.0637 S33: 0.0919 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 129 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4875 30.2294 18.5177 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.3675 REMARK 3 T33: 0.2919 T12: 0.0173 REMARK 3 T13: 0.0263 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 3.2227 L22: 6.1691 REMARK 3 L33: 2.7569 L12: 1.2707 REMARK 3 L13: -0.1288 L23: 0.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.1108 S13: 0.0792 REMARK 3 S21: -0.3514 S22: -0.1868 S23: -0.1001 REMARK 3 S31: -0.0537 S32: -0.1727 S33: 0.1220 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 188 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4568 39.5998 21.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.3994 REMARK 3 T33: 0.5904 T12: 0.0431 REMARK 3 T13: 0.0083 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 7.4824 L22: 8.9925 REMARK 3 L33: 2.2207 L12: 6.3768 REMARK 3 L13: 0.4597 L23: -0.3068 REMARK 3 S TENSOR REMARK 3 S11: 0.4610 S12: -0.3847 S13: 0.8837 REMARK 3 S21: 0.1167 S22: -0.6842 S23: 0.2260 REMARK 3 S31: -0.0981 S32: -0.0503 S33: 0.2614 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20220820 REMARK 200 DATA SCALING SOFTWARE : XDS 20220820 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 163.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 18.71 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 163.8 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 17.97 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 59.45 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FAB4 DISSOCIATED FROM TARGET IN REMARK 280 CRYSTALLIZATION DROP., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.22200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.61100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.61100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.22200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 136 REMARK 465 LYS H 137 REMARK 465 SER H 223 REMARK 465 CYS H 224 REMARK 465 GLY H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 CYS L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE H 103 -156.15 -96.46 REMARK 500 SER H 140 21.24 -146.24 REMARK 500 SER L 30 -124.41 55.82 REMARK 500 ALA L 51 -37.05 66.76 REMARK 500 ASN L 138 74.79 57.16 REMARK 500 PRO L 141 -167.53 -76.41 REMARK 500 ASN L 152 5.23 56.85 REMARK 500 ARG L 209 106.33 -58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K H 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 57 OD1 REMARK 620 2 THR H 58 O 91.6 REMARK 620 3 GLU H 59 OE2 65.7 70.4 REMARK 620 4 GLY H 198 O 101.8 16.1 64.7 REMARK 620 5 HOH H 467 O 128.9 58.0 125.0 60.4 REMARK 620 6 HOH H 482 O 129.7 104.7 164.5 106.5 47.0 REMARK 620 7 HOH H 483 O 94.5 172.1 116.7 162.0 114.2 67.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8C7M RELATED DB: PDB REMARK 900 SAME FAB REMARK 900 RELATED ID: 8ODX RELATED DB: PDB REMARK 900 SAME FAB, WT VARIANT DBREF 8PPM H 1 231 PDB 8PPM 8PPM 1 231 DBREF 8PPM L 1 212 PDB 8PPM 8PPM 1 212 SEQRES 1 H 231 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 231 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 231 PHE THR PHE THR SER TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 H 231 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA GLY ILE SER SEQRES 5 H 231 TYR ASP ALA SER ASP THR GLU TYR ALA ASP SER VAL LYS SEQRES 6 H 231 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 231 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 231 ALA VAL TYR TYR CYS ALA ARG SER PRO ASP TYR ILE ILE SEQRES 9 H 231 ASP TYR GLY PHE ASP TYR TRP GLY ARG GLY THR LEU VAL SEQRES 10 H 231 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 231 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 231 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 231 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 231 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 231 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 231 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 231 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 231 LYS SER CYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 L 212 ALA ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 212 GLN GLY ILE SER SER ASP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 212 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 212 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 212 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 212 TRP TRP TYR PRO PHE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 212 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 212 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 212 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 212 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 212 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 212 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 212 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 212 VAL THR GLN GLY THR THR SER VAL THR LYS SER PHE ASN SEQRES 17 L 212 ARG GLY GLU CYS HET K H 301 1 HET K H 302 1 HETNAM K POTASSIUM ION FORMUL 3 K 2(K 1+) FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 62 LYS H 65 5 4 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 164 ALA H 166 5 3 HELIX 5 AA5 SER H 195 LEU H 197 5 3 HELIX 6 AA6 LYS H 209 ASN H 212 5 4 HELIX 7 AA7 GLN L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N GLY H 10 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 115 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O GLU H 59 N GLY H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N GLY H 10 SHEET 3 AA3 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 115 SHEET 4 AA3 4 TYR H 110 TRP H 111 -1 O TYR H 110 N ARG H 98 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AA4 4 TYR H 184 PRO H 193 -1 O VAL H 192 N ALA H 144 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA5 4 SER H 128 LEU H 132 0 SHEET 2 AA5 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AA5 4 TYR H 184 PRO H 193 -1 O VAL H 192 N ALA H 144 SHEET 4 AA5 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 TYR H 202 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AA6 3 THR H 213 VAL H 219 -1 O VAL H 215 N VAL H 206 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 GLN L 198 -1 O ALA L 193 N LYS L 149 SHEET 4 AB2 4 THR L 201 ASN L 208 -1 O VAL L 203 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 148 CYS H 204 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK OD1 ASP H 57 K K H 301 1555 1555 3.19 LINK O THR H 58 K K H 301 1555 1555 2.77 LINK OE2 GLU H 59 K K H 301 1555 1555 3.01 LINK O GLY H 198 K K H 301 1555 3665 2.81 LINK K K H 301 O HOH H 467 1555 1555 3.42 LINK K K H 301 O HOH H 482 1555 2654 2.74 LINK K K H 301 O HOH H 483 1555 2654 2.74 CISPEP 1 PHE H 154 PRO H 155 0 -3.78 CISPEP 2 GLU H 156 PRO H 157 0 -4.37 CISPEP 3 SER L 7 PRO L 8 0 -2.80 CISPEP 4 TYR L 94 PRO L 95 0 -1.09 CISPEP 5 TYR L 140 PRO L 141 0 0.10 CRYST1 72.069 72.069 163.833 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013876 0.008011 0.000000 0.00000 SCALE2 0.000000 0.016022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006104 0.00000