HEADER ISOMERASE 10-JUL-23 8PPZ TITLE CO-CRYSTAL STRUCTURE OF FKBP12, COMPOUND 7 AND THE FRB FRAGMENT OF TITLE 2 MTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE FKBP1A,12 KDA FK506-BINDING PROTEIN,12 KDA FKBP,FKBP- COMPND 5 12,CALSTABIN-1,FK506-BINDING PROTEIN 1A,FKBP-1A,IMMUNOPHILIN FKBP12, COMPND 6 ROTAMASE; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SERINE/THREONINE-PROTEIN KINASE MTOR; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED COMPND 14 PROTEIN 1,FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN,MAMMALIAN COMPND 15 TARGET OF RAPAMYCIN,MTOR,MECHANISTIC TARGET OF RAPAMYCIN,RAPAMYCIN COMPND 16 AND FKBP12 TARGET 1,RAPAMYCIN TARGET PROTEIN 1; COMPND 17 EC: 2.7.11.1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP1A, FKBP1, FKBP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MTOR, FRAP, FRAP1, FRAP2, RAFT1, RAPT1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS FKBP12, MTOR, KINASE, COMPLEX, MOLECULAR GLUE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MEYNERS,R.C.E.DEUTSCHER,F.HAUSCH REVDAT 1 09-AUG-23 8PPZ 0 JRNL AUTH C.MEYNERS,R.C.E.DEUTSCHER,F.HAUSCH JRNL TITL CO-CRYSTAL STRUCTURE OF FKBP12, COMPOUND 7 AND THE FRB JRNL TITL 2 FRAGMENT OF MTOR JRNL REF CHEMRXIV 2023 JRNL REFN ISSN 2573-2293 JRNL DOI 10.26434/CHEMRXIV-2023-4VB0M REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 20480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.151 REMARK 3 FREE R VALUE TEST SET COUNT : 1055 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.91800 REMARK 3 B22 (A**2) : -2.69300 REMARK 3 B33 (A**2) : -0.22500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1675 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1521 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2263 ; 1.661 ; 1.701 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3503 ; 0.638 ; 1.612 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 199 ; 6.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 6.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;14.970 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 230 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1980 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 333 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 41 ; 0.112 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 830 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.084 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.110 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 806 ; 2.845 ; 3.113 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 805 ; 2.821 ; 3.110 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1001 ; 3.863 ; 5.581 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1002 ; 3.861 ; 5.584 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 869 ; 3.937 ; 3.356 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 870 ; 3.935 ; 3.357 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1262 ; 5.733 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1263 ; 5.730 ; 6.001 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8PPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 93.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 93.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1 M HEPES PH 7.5, 0.2 M REMARK 280 CALCIUM ACTETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.67450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.67450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA B2202 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2326 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2331 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 2017 REMARK 465 ALA B 2018 REMARK 465 LYS B 2113 REMARK 465 GLN B 2114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU B2022 CG CD OE1 OE2 REMARK 470 GLU B2052 CG CD OE1 OE2 REMARK 470 ARG B2060 CG CD NE CZ NH1 NH2 REMARK 470 GLN B2063 CG CD OE1 NE2 REMARK 470 THR B2064 OG1 CG2 REMARK 470 LEU B2065 CG CD1 CD2 REMARK 470 LYS B2066 CG CD CE NZ REMARK 470 ARG B2110 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 2091 H ASN B 2093 1.30 REMARK 500 OE2 GLU B 2049 O HOH B 2301 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 81 -117.07 -131.13 REMARK 500 ILE A 90 -43.71 -154.58 REMARK 500 PRO B2062 178.36 -58.26 REMARK 500 GLN B2063 -68.04 -155.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 329 O REMARK 620 2 HOH A 373 O 107.0 REMARK 620 3 HOH B2313 O 104.4 97.7 REMARK 620 4 HOH B2339 O 109.7 118.7 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2304 O REMARK 620 2 HOH B2304 O 77.2 REMARK 620 3 HOH B2309 O 63.6 132.5 REMARK 620 4 HOH B2309 O 132.5 63.7 162.9 REMARK 620 5 HOH B2329 O 48.1 62.6 71.2 122.5 REMARK 620 6 HOH B2329 O 62.6 48.1 122.4 71.2 87.6 REMARK 620 7 HOH B2331 O 141.4 141.4 81.5 81.5 136.3 136.1 REMARK 620 8 HOH B2331 O 141.3 141.4 81.5 81.5 136.3 136.1 0.0 REMARK 620 9 HOH B2345 O 69.9 102.2 89.0 92.3 117.6 54.1 94.7 94.7 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 8PPZ A 1 107 UNP P62942 FKB1A_HUMAN 2 108 DBREF 8PPZ B 2025 2114 UNP P42345 MTOR_HUMAN 2025 2114 SEQADV 8PPZ VAL A 22 UNP P62942 CYS 23 ENGINEERED MUTATION SEQADV 8PPZ GLY B 2017 UNP P42345 EXPRESSION TAG SEQADV 8PPZ ALA B 2018 UNP P42345 EXPRESSION TAG SEQADV 8PPZ MET B 2019 UNP P42345 EXPRESSION TAG SEQADV 8PPZ ASP B 2020 UNP P42345 EXPRESSION TAG SEQADV 8PPZ PRO B 2021 UNP P42345 EXPRESSION TAG SEQADV 8PPZ GLU B 2022 UNP P42345 EXPRESSION TAG SEQADV 8PPZ PHE B 2023 UNP P42345 EXPRESSION TAG SEQADV 8PPZ MET B 2024 UNP P42345 EXPRESSION TAG SEQRES 1 A 107 GLY VAL GLN VAL GLU THR ILE SER PRO GLY ASP GLY ARG SEQRES 2 A 107 THR PHE PRO LYS ARG GLY GLN THR VAL VAL VAL HIS TYR SEQRES 3 A 107 THR GLY MET LEU GLU ASP GLY LYS LYS PHE ASP SER SER SEQRES 4 A 107 ARG ASP ARG ASN LYS PRO PHE LYS PHE MET LEU GLY LYS SEQRES 5 A 107 GLN GLU VAL ILE ARG GLY TRP GLU GLU GLY VAL ALA GLN SEQRES 6 A 107 MET SER VAL GLY GLN ARG ALA LYS LEU THR ILE SER PRO SEQRES 7 A 107 ASP TYR ALA TYR GLY ALA THR GLY HIS PRO GLY ILE ILE SEQRES 8 A 107 PRO PRO HIS ALA THR LEU VAL PHE ASP VAL GLU LEU LEU SEQRES 9 A 107 LYS LEU GLU SEQRES 1 B 98 GLY ALA MET ASP PRO GLU PHE MET GLU MET TRP HIS GLU SEQRES 2 B 98 GLY LEU GLU GLU ALA SER ARG LEU TYR PHE GLY GLU ARG SEQRES 3 B 98 ASN VAL LYS GLY MET PHE GLU VAL LEU GLU PRO LEU HIS SEQRES 4 B 98 ALA MET MET GLU ARG GLY PRO GLN THR LEU LYS GLU THR SEQRES 5 B 98 SER PHE ASN GLN ALA TYR GLY ARG ASP LEU MET GLU ALA SEQRES 6 B 98 GLN GLU TRP CYS ARG LYS TYR MET LYS SER GLY ASN VAL SEQRES 7 B 98 LYS ASP LEU THR GLN ALA TRP ASP LEU TYR TYR HIS VAL SEQRES 8 B 98 PHE ARG ARG ILE SER LYS GLN HET 0AN A 201 64 HET CA A 202 1 HET ACT B2201 7 HET CA B2202 1 HET CA B2203 1 HET CA B2204 1 HETNAM 0AN (1~{S},5~{S},6~{R})-10-[3,5-BIS(CHLORANYL) HETNAM 2 0AN PHENYL]SULFONYL-5-[(~{E})-2-(2-CHLOROPHENYL)ETHENYL]- HETNAM 3 0AN 3-(PYRIDIN-2-YLMETHYL)-3,10-DIAZABICYCLO[4.3.1]DECAN- HETNAM 4 0AN 2-ONE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 3 0AN C28 H26 CL3 N3 O3 S FORMUL 4 CA 4(CA 2+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 9 HOH *128(H2 O) HELIX 1 AA1 ILE A 56 ALA A 64 1 9 HELIX 2 AA2 PRO A 78 ALA A 81 5 4 HELIX 3 AA3 ASP B 2020 GLY B 2040 1 21 HELIX 4 AA4 ASN B 2043 ARG B 2060 1 18 HELIX 5 AA5 THR B 2064 GLY B 2092 1 29 HELIX 6 AA6 ASN B 2093 ILE B 2111 1 19 SHEET 1 AA1 5 VAL A 2 SER A 8 0 SHEET 2 AA1 5 ARG A 71 ILE A 76 -1 O ARG A 71 N ILE A 7 SHEET 3 AA1 5 LEU A 97 GLU A 107 -1 O VAL A 101 N ALA A 72 SHEET 4 AA1 5 THR A 21 LEU A 30 -1 N THR A 21 O GLU A 107 SHEET 5 AA1 5 LYS A 35 SER A 38 -1 O ASP A 37 N GLY A 28 SHEET 1 AA2 5 VAL A 2 SER A 8 0 SHEET 2 AA2 5 ARG A 71 ILE A 76 -1 O ARG A 71 N ILE A 7 SHEET 3 AA2 5 LEU A 97 GLU A 107 -1 O VAL A 101 N ALA A 72 SHEET 4 AA2 5 THR A 21 LEU A 30 -1 N THR A 21 O GLU A 107 SHEET 5 AA2 5 PHE A 46 MET A 49 -1 O PHE A 48 N VAL A 22 LINK O HOH A 329 CA CA B2204 1555 1555 2.40 LINK O HOH A 373 CA CA B2204 1555 1555 3.17 LINK CA CA B2202 O HOH B2304 1555 1555 3.16 LINK CA CA B2202 O HOH B2304 1555 2556 3.16 LINK CA CA B2202 O HOH B2309 1555 1555 2.62 LINK CA CA B2202 O HOH B2309 1555 2556 2.62 LINK CA CA B2202 O HOH B2329 1555 1555 2.72 LINK CA CA B2202 O HOH B2329 1555 2556 2.73 LINK CA CA B2202 O HOH B2331 1555 1555 2.59 LINK CA CA B2202 O HOH B2331 1555 2556 2.59 LINK CA CA B2202 O HOH B2345 1555 1555 2.31 LINK CA CA B2202 O HOH B2345 1555 2556 2.30 LINK CA CA B2204 O HOH B2313 1555 1555 2.86 LINK CA CA B2204 O HOH B2339 1555 1555 2.72 CRYST1 39.912 64.680 93.349 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010712 0.00000