HEADER TRANSFERASE 11-JUL-23 8PQA TITLE C-KIT KINASE DOMAIN IN COMPLEX WITH AVAPRITINIB DERIVATIVE 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 5 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 6 SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS C-KIT PROTEIN KINASE, AVAPRITINIB, INHIBITOR, TYROSINE KINASE, KEYWDS 2 TRANSMEMBRANE RECEPTOR, STEM CELL FACTOR, SCF, STEM CELL FACTOR KEYWDS 3 RECEPTOR, GIST, GASTROINTESTINAL STROMAL TUMORS, P10721, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEUBER,M.P.MUELLER,D.RAUH REVDAT 3 13-MAR-24 8PQA 1 REMARK REVDAT 2 17-JAN-24 8PQA 1 JRNL REVDAT 1 27-DEC-23 8PQA 0 JRNL AUTH A.TEUBER,T.SCHULZ,B.S.FLETCHER,R.GONTLA,T.MUHLENBERG, JRNL AUTH 2 M.L.ZISCHINSKY,J.NIGGENABER,J.WEISNER,S.B.KLEINBOLTING, JRNL AUTH 3 J.LATEGAHN,S.SIEVERS,M.P.MULLER,S.BAUER,D.RAUH JRNL TITL AVAPRITINIB-BASED SAR STUDIES UNVEIL A BINDING POCKET IN KIT JRNL TITL 2 AND PDGFRA. JRNL REF NAT COMMUN V. 15 63 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38167404 JRNL DOI 10.1038/S41467-023-44376-8 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 81530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2100 - 5.0700 1.00 2921 153 0.1766 0.1823 REMARK 3 2 5.0600 - 4.0200 1.00 2784 147 0.1407 0.1441 REMARK 3 3 4.0200 - 3.5100 1.00 2732 144 0.1500 0.1756 REMARK 3 4 3.5100 - 3.1900 1.00 2709 142 0.1786 0.1901 REMARK 3 5 3.1900 - 2.9600 1.00 2692 142 0.1934 0.2434 REMARK 3 6 2.9600 - 2.7900 1.00 2700 142 0.1949 0.2330 REMARK 3 7 2.7900 - 2.6500 1.00 2714 143 0.1955 0.2202 REMARK 3 8 2.6500 - 2.5300 1.00 2670 141 0.1986 0.2582 REMARK 3 9 2.5300 - 2.4400 1.00 2657 139 0.1917 0.2309 REMARK 3 10 2.4400 - 2.3500 1.00 2669 141 0.1887 0.2262 REMARK 3 11 2.3500 - 2.2800 1.00 2703 142 0.1878 0.2360 REMARK 3 12 2.2800 - 2.2100 1.00 2693 142 0.1901 0.2628 REMARK 3 13 2.2100 - 2.1600 1.00 2633 139 0.1865 0.2218 REMARK 3 14 2.1600 - 2.1000 1.00 2641 138 0.1882 0.2209 REMARK 3 15 2.1000 - 2.0600 1.00 2674 141 0.1903 0.2633 REMARK 3 16 2.0600 - 2.0100 1.00 2667 141 0.1960 0.2277 REMARK 3 17 2.0100 - 1.9700 1.00 2628 138 0.2081 0.2530 REMARK 3 18 1.9700 - 1.9300 1.00 2618 138 0.2578 0.2911 REMARK 3 19 1.9300 - 1.9000 1.00 2625 138 0.2620 0.2701 REMARK 3 20 1.9000 - 1.8700 0.99 2697 141 0.2472 0.2949 REMARK 3 21 1.8700 - 1.8400 0.99 2573 137 0.2410 0.2893 REMARK 3 22 1.8400 - 1.8100 0.99 2656 141 0.2453 0.2848 REMARK 3 23 1.8100 - 1.7800 1.00 2591 136 0.2689 0.2844 REMARK 3 24 1.7800 - 1.7600 1.00 2674 141 0.2992 0.3486 REMARK 3 25 1.7600 - 1.7300 1.00 2575 135 0.3390 0.3718 REMARK 3 26 1.7300 - 1.7100 1.00 2675 141 0.3970 0.4157 REMARK 3 27 1.7100 - 1.6900 0.99 2593 138 0.4508 0.4791 REMARK 3 28 1.6900 - 1.6700 0.99 2630 138 0.5340 0.5752 REMARK 3 29 1.6700 - 1.6500 0.99 2657 140 0.5886 0.5600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.616 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4890 REMARK 3 ANGLE : 0.986 6655 REMARK 3 CHIRALITY : 0.065 719 REMARK 3 PLANARITY : 0.009 846 REMARK 3 DIHEDRAL : 13.527 1790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 566 THROUGH 677 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7856 -3.3245 61.1162 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2291 REMARK 3 T33: 0.1917 T12: 0.0185 REMARK 3 T13: -0.0031 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.9669 L22: 1.6349 REMARK 3 L33: 2.8202 L12: 1.7926 REMARK 3 L13: -0.8272 L23: -0.1529 REMARK 3 S TENSOR REMARK 3 S11: 0.1602 S12: -0.3645 S13: -0.0804 REMARK 3 S21: 0.1532 S22: -0.1215 S23: -0.0307 REMARK 3 S31: -0.1486 S32: -0.0615 S33: -0.0457 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 678 THROUGH 932 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1212 -9.4777 36.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.2430 T22: 0.2408 REMARK 3 T33: 0.2201 T12: -0.0101 REMARK 3 T13: -0.0093 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.1321 L22: 1.5882 REMARK 3 L33: 3.1122 L12: -0.6154 REMARK 3 L13: 0.3040 L23: 0.4312 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.0010 S13: 0.0517 REMARK 3 S21: -0.0439 S22: 0.0320 S23: 0.0213 REMARK 3 S31: -0.2585 S32: -0.0170 S33: -0.0481 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 566 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6947 -7.0358 -14.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.3152 REMARK 3 T33: 0.2782 T12: 0.0148 REMARK 3 T13: -0.0289 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.0630 L22: 6.9105 REMARK 3 L33: 3.1226 L12: 2.6122 REMARK 3 L13: -1.9278 L23: -3.7241 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.0481 S13: -0.1309 REMARK 3 S21: -0.1932 S22: -0.2329 S23: -0.5734 REMARK 3 S31: 0.1045 S32: 0.0569 S33: 0.2264 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 828 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4963 1.7171 -4.6513 REMARK 3 T TENSOR REMARK 3 T11: 0.2741 T22: 0.2657 REMARK 3 T33: 0.3053 T12: 0.0705 REMARK 3 T13: -0.0429 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.3198 L22: 0.9976 REMARK 3 L33: 5.2891 L12: 0.0840 REMARK 3 L13: 1.6906 L23: -0.9231 REMARK 3 S TENSOR REMARK 3 S11: -0.2488 S12: -0.1576 S13: 0.2112 REMARK 3 S21: 0.0192 S22: -0.0071 S23: -0.1537 REMARK 3 S31: -0.3951 S32: -0.3521 S33: 0.2129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 829 THROUGH 930 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5127 -1.1450 14.6562 REMARK 3 T TENSOR REMARK 3 T11: 0.3336 T22: 0.3184 REMARK 3 T33: 0.2275 T12: 0.0852 REMARK 3 T13: -0.0547 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 3.2859 L22: 1.8428 REMARK 3 L33: 2.8213 L12: -0.2772 REMARK 3 L13: 0.8713 L23: -0.1484 REMARK 3 S TENSOR REMARK 3 S11: -0.2267 S12: -0.4216 S13: 0.2822 REMARK 3 S21: 0.1221 S22: 0.0720 S23: 0.0296 REMARK 3 S31: -0.3067 S32: -0.4821 S33: 0.1265 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.38 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.68 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MG/ML, 23% PEG3350, 150 MM NA2 REMARK 280 -TARTRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.38000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.38000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 MET A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 GLU A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 TRP A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 VAL A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 SER A 563 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 TYR A 752 REMARK 465 LYS A 753 REMARK 465 VAL A 754 REMARK 465 ALA A 755 REMARK 465 PRO A 756 REMARK 465 GLU A 757 REMARK 465 ASP A 758 REMARK 465 LEU A 759 REMARK 465 TYR A 760 REMARK 465 LYS A 761 REMARK 465 ASP A 762 REMARK 465 PHE A 763 REMARK 465 SER A 931 REMARK 465 THR A 932 REMARK 465 ASN A 933 REMARK 465 HIS A 934 REMARK 465 GLY C 548 REMARK 465 SER C 549 REMARK 465 MET C 550 REMARK 465 PRO C 551 REMARK 465 MET C 552 REMARK 465 TYR C 553 REMARK 465 GLU C 554 REMARK 465 VAL C 555 REMARK 465 GLN C 556 REMARK 465 TRP C 557 REMARK 465 LYS C 558 REMARK 465 VAL C 559 REMARK 465 VAL C 560 REMARK 465 GLU C 561 REMARK 465 GLU C 562 REMARK 465 SER C 563 REMARK 465 ASN C 564 REMARK 465 GLY C 565 REMARK 465 VAL C 754 REMARK 465 ALA C 755 REMARK 465 PRO C 756 REMARK 465 GLU C 757 REMARK 465 ASP C 758 REMARK 465 LEU C 759 REMARK 465 TYR C 760 REMARK 465 LYS C 761 REMARK 465 ASN C 933 REMARK 465 HIS C 934 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 630 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 632 OG1 CG2 REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 470 LYS A 818 CG CD CE NZ REMARK 470 ASN A 819 CG OD1 ND2 REMARK 470 ASP A 820 CG OD1 OD2 REMARK 470 SER A 821 OG REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 ASN A 828 CG OD1 ND2 REMARK 470 LYS A 918 CG CD CE NZ REMARK 470 LYS A 926 CG CD CE NZ REMARK 470 ILE A 928 CG1 CG2 CD1 REMARK 470 ASN C 566 CG OD1 ND2 REMARK 470 LYS C 593 CG CD CE NZ REMARK 470 PHE C 600 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP C 687 CG OD1 OD2 REMARK 470 GLU C 688 CG CD OE1 OE2 REMARK 470 LYS C 693 CG CD CE NZ REMARK 470 ASP C 762 CG OD1 OD2 REMARK 470 PHE C 763 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 818 CG CD CE NZ REMARK 470 SER C 821 OG REMARK 470 LYS C 826 CG CD CE NZ REMARK 470 ASN C 828 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 791 -1.00 74.34 REMARK 500 ASP A 792 48.81 -143.22 REMARK 500 ASP A 810 85.50 63.58 REMARK 500 LYS A 818 -118.86 51.65 REMARK 500 SER A 821 -5.69 67.15 REMARK 500 ASN A 828 37.89 -141.37 REMARK 500 ILE C 612 -60.39 -90.72 REMARK 500 ARG C 791 -0.95 73.67 REMARK 500 ASP C 792 49.26 -146.74 REMARK 500 THR C 801 -167.55 -128.54 REMARK 500 ASP C 810 85.37 60.72 REMARK 500 SER C 821 -5.70 65.23 REMARK 500 LYS C 826 68.32 -109.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PQA A 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8PQA A 766 934 UNP P10721 KIT_HUMAN 766 934 DBREF 8PQA C 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8PQA C 766 934 UNP P10721 KIT_HUMAN 766 934 SEQADV 8PQA GLY A 548 UNP P10721 EXPRESSION TAG SEQADV 8PQA SER A 549 UNP P10721 EXPRESSION TAG SEQADV 8PQA MET A 550 UNP P10721 EXPRESSION TAG SEQADV 8PQA SER A 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8PQA SER A 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8PQA GLN A 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8PQA SER A 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8PQA GLU A 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8PQA HIS A 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8PQA GLU A 688 UNP P10721 LINKER SEQADV 8PQA PHE A 689 UNP P10721 LINKER SEQADV 8PQA VAL A 690 UNP P10721 LINKER SEQADV 8PQA PRO A 691 UNP P10721 LINKER SEQADV 8PQA TYR A 752 UNP P10721 LINKER SEQADV 8PQA LYS A 753 UNP P10721 LINKER SEQADV 8PQA VAL A 754 UNP P10721 LINKER SEQADV 8PQA ALA A 755 UNP P10721 LINKER SEQADV 8PQA PRO A 756 UNP P10721 LINKER SEQADV 8PQA GLU A 757 UNP P10721 LINKER SEQADV 8PQA ASP A 758 UNP P10721 LINKER SEQADV 8PQA LEU A 759 UNP P10721 LINKER SEQADV 8PQA TYR A 760 UNP P10721 LINKER SEQADV 8PQA LYS A 761 UNP P10721 LINKER SEQADV 8PQA ASP A 762 UNP P10721 LINKER SEQADV 8PQA PHE A 763 UNP P10721 LINKER SEQADV 8PQA LEU A 764 UNP P10721 LINKER SEQADV 8PQA THR A 765 UNP P10721 LINKER SEQADV 8PQA HIS A 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8PQA ASN A 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8PQA ASP A 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8PQA SER A 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8PQA SER A 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8PQA TYR A 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8PQA ASP A 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8PQA ASP A 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQADV 8PQA GLY C 548 UNP P10721 EXPRESSION TAG SEQADV 8PQA SER C 549 UNP P10721 EXPRESSION TAG SEQADV 8PQA MET C 550 UNP P10721 EXPRESSION TAG SEQADV 8PQA SER C 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8PQA SER C 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8PQA GLN C 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8PQA SER C 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8PQA GLU C 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8PQA HIS C 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8PQA GLU C 688 UNP P10721 LINKER SEQADV 8PQA PHE C 689 UNP P10721 LINKER SEQADV 8PQA VAL C 690 UNP P10721 LINKER SEQADV 8PQA PRO C 691 UNP P10721 LINKER SEQADV 8PQA TYR C 692 UNP P10721 LINKER SEQADV 8PQA LYS C 693 UNP P10721 LINKER SEQADV 8PQA VAL C 754 UNP P10721 LINKER SEQADV 8PQA ALA C 755 UNP P10721 LINKER SEQADV 8PQA PRO C 756 UNP P10721 LINKER SEQADV 8PQA GLU C 757 UNP P10721 LINKER SEQADV 8PQA ASP C 758 UNP P10721 LINKER SEQADV 8PQA LEU C 759 UNP P10721 LINKER SEQADV 8PQA TYR C 760 UNP P10721 LINKER SEQADV 8PQA LYS C 761 UNP P10721 LINKER SEQADV 8PQA ASP C 762 UNP P10721 LINKER SEQADV 8PQA PHE C 763 UNP P10721 LINKER SEQADV 8PQA LEU C 764 UNP P10721 LINKER SEQADV 8PQA THR C 765 UNP P10721 LINKER SEQADV 8PQA HIS C 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8PQA ASN C 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8PQA ASP C 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8PQA SER C 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8PQA SER C 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8PQA TYR C 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8PQA ASP C 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8PQA ASP C 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQRES 1 A 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 A 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 A 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 A 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 A 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 A 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 A 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 A 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 A 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 A 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 A 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 A 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 A 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 A 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 A 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 A 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 A 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 A 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 A 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 A 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 A 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 A 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 A 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 A 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 A 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 A 327 ASN HIS SEQRES 1 C 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 C 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 C 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 C 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 C 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 C 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 C 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 C 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 C 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 C 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 C 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 C 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 C 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 C 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 C 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 C 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 C 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 C 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 C 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 C 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 C 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 C 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 C 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 C 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 C 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 C 327 ASN HIS HET 98A A1001 27 HET 98A C1001 27 HETNAM 98A 6-(1-METHYLPYRAZOL-4-YL)-4-(4-PYRIMIDIN-2-YLPIPERAZIN- HETNAM 2 98A 1-YL)PYRROLO[2,1-F][1,2,4]TRIAZINE FORMUL 3 98A 2(C18 H19 N9) FORMUL 5 HOH *474(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 HIS A 630 GLY A 648 1 19 HELIX 5 AA5 ASP A 677 ARG A 686 1 10 HELIX 6 AA6 ASP A 687 PHE A 689 5 3 HELIX 7 AA7 THR A 765 LYS A 786 1 22 HELIX 8 AA8 ALA A 794 ARG A 796 5 3 HELIX 9 AA9 HIS A 802 ASN A 804 5 3 HELIX 10 AB1 PRO A 832 MET A 836 5 5 HELIX 11 AB2 ALA A 837 SER A 844 1 8 HELIX 12 AB3 THR A 847 SER A 864 1 18 HELIX 13 AB4 ASP A 876 GLY A 886 1 11 HELIX 14 AB5 PRO A 896 TRP A 907 1 12 HELIX 15 AB6 ASP A 910 ARG A 914 5 5 HELIX 16 AB7 THR A 916 GLU A 930 1 15 HELIX 17 AB8 ASP C 572 LEU C 576 5 5 HELIX 18 AB9 ASP C 579 GLU C 583 5 5 HELIX 19 AC1 PRO C 585 ASN C 587 5 3 HELIX 20 AC2 HIS C 630 GLY C 648 1 19 HELIX 21 AC3 ASP C 677 ARG C 686 1 10 HELIX 22 AC4 ASP C 687 PHE C 689 5 3 HELIX 23 AC5 THR C 765 LYS C 786 1 22 HELIX 24 AC6 ALA C 794 ARG C 796 5 3 HELIX 25 AC7 HIS C 802 ASN C 804 5 3 HELIX 26 AC8 PRO C 832 MET C 836 5 5 HELIX 27 AC9 ALA C 837 SER C 844 1 8 HELIX 28 AD1 THR C 847 SER C 864 1 18 HELIX 29 AD2 ASP C 876 GLY C 886 1 11 HELIX 30 AD3 PRO C 896 TRP C 907 1 12 HELIX 31 AD4 ASP C 910 ARG C 914 5 5 HELIX 32 AD5 THR C 916 THR C 932 1 17 SHEET 1 AA1 5 LEU A 589 ALA A 597 0 SHEET 2 AA1 5 GLY A 601 GLN A 609 -1 O GLU A 605 N GLY A 592 SHEET 3 AA1 5 ALA A 617 LEU A 625 -1 O MET A 624 N LYS A 602 SHEET 4 AA1 5 LEU A 667 GLU A 671 -1 O VAL A 668 N LYS A 623 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA2 2 CYS A 788 ILE A 789 0 SHEET 2 AA2 2 ARG A 815 ASP A 816 -1 O ARG A 815 N ILE A 789 SHEET 1 AA3 2 ILE A 798 THR A 801 0 SHEET 2 AA3 2 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA4 2 TYR A 823 VAL A 824 0 SHEET 2 AA4 2 VAL A 845 TYR A 846 -1 O TYR A 846 N TYR A 823 SHEET 1 AA5 5 LEU C 589 ALA C 597 0 SHEET 2 AA5 5 GLY C 601 GLN C 609 -1 O GLU C 605 N GLY C 592 SHEET 3 AA5 5 ALA C 617 LEU C 625 -1 O VAL C 620 N ALA C 606 SHEET 4 AA5 5 LEU C 667 GLU C 671 -1 O THR C 670 N ALA C 621 SHEET 5 AA5 5 LEU C 656 CYS C 660 -1 N LEU C 657 O ILE C 669 SHEET 1 AA6 2 CYS C 788 ILE C 789 0 SHEET 2 AA6 2 ARG C 815 ASP C 816 -1 O ARG C 815 N ILE C 789 SHEET 1 AA7 2 ILE C 798 THR C 801 0 SHEET 2 AA7 2 ILE C 805 ILE C 808 -1 O LYS C 807 N LEU C 799 SHEET 1 AA8 2 TYR C 823 VAL C 824 0 SHEET 2 AA8 2 VAL C 845 TYR C 846 -1 O TYR C 846 N TYR C 823 CRYST1 58.760 58.880 193.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005170 0.00000