HEADER OXIDOREDUCTASE 11-JUL-23 8PQN TITLE NQO1 BOUND TO RBS-10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)H DEHYDROGENASE [QUINONE] 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AZOREDUCTASE,DT-DIAPHORASE,DTD,MENADIONE REDUCTASE,NAD(P) COMPND 5 H:QUINONE OXIDOREDUCTASE 1,PHYLLOQUINONE REDUCTASE,QUINONE REDUCTASE COMPND 6 1,QR1; COMPND 7 EC: 1.6.5.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO1, DIA4, NMOR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NQO1, RBS-10, QUINONE REDUCTASE, DEGRADER RESISTANCE, PRODRUG, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.POUS,F.JOSE-DURAN,C.MAYOR-RUIZ,A.RIERA REVDAT 2 20-MAR-24 8PQN 1 JRNL REVDAT 1 10-JAN-24 8PQN 0 JRNL AUTH B.M.G.BARBOSA,A.SFYAKI,S.RAFAEL,F.JOSE-DURAN,J.POUS, JRNL AUTH 2 C.SANCHEZ-ZARZALEJO,C.PEREZ-LOPEZ,M.VILANOVA,M.CIGLER,M.GAY, JRNL AUTH 3 M.VILASECA,G.E.WINTER,A.RIERA,C.MAYOR-RUIZ JRNL TITL DISCOVERY AND MECHANISTIC ELUCIDATION OF NQO1-BIOACTIVATABLE JRNL TITL 2 SMALL MOLECULES THAT OVERCOME RESISTANCE TO DEGRADERS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 63 16730 2024 JRNL REFN ESSN 1521-3773 JRNL PMID 38153885 JRNL DOI 10.1002/ANIE.202316730 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.362 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.073 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.4760 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.5810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 121.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 209.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 31.51900 REMARK 3 B22 (A**2) : -11.45000 REMARK 3 B33 (A**2) : -20.06900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 107.197 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9102 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 8368 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12320 ; 0.894 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19496 ; 0.313 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 7.500 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ; 2.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1554 ;14.012 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1292 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10150 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1882 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2087 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 133 ; 0.227 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4430 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4364 ;10.391 ;21.475 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4364 ;10.390 ;21.474 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5448 ;17.181 ;32.149 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5449 ;17.180 ;32.151 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4738 ; 8.074 ;21.642 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4735 ; 8.063 ;21.638 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6872 ;14.056 ;32.397 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6873 ;14.055 ;32.397 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 273 NULL REMARK 3 1 A 1 A 273 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 1 A 273 NULL REMARK 3 2 A 1 A 273 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 1 A 273 NULL REMARK 3 3 A 1 A 273 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 4 A 1 A 273 NULL REMARK 3 4 A 1 A 273 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 A 1 A 273 NULL REMARK 3 5 A 1 A 273 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 6 A 1 A 273 NULL REMARK 3 6 A 1 A 273 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8PQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KIRKPATRICK-BAEZ REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.4.0 REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.14, SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13579 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 89.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SMALL YELLOW RODS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300MM TRIS 9.2 2.8M AMMONIUM SULFATE, REMARK 280 PH 9.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.23950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.23950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.37400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.18450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.37400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.18450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.23950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.37400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.18450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.23950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.37400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.18450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL C 1 CG1 CG2 REMARK 470 VAL D 1 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 45 ND2 ASN A 45 4555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 57.93 -111.45 REMARK 500 ASP A 40 100.51 -51.57 REMARK 500 MET A 44 39.13 -94.83 REMARK 500 ASN A 45 81.47 -4.47 REMARK 500 PRO A 62 34.99 -93.85 REMARK 500 ALA A 63 -67.76 -108.99 REMARK 500 HIS A 79 59.50 -151.61 REMARK 500 TRP A 105 48.44 71.17 REMARK 500 GLU A 123 -53.19 79.25 REMARK 500 TYR A 132 -121.93 62.50 REMARK 500 PHE A 137 39.90 -97.97 REMARK 500 ILE A 171 -61.19 -102.02 REMARK 500 ILE A 175 -60.88 -121.93 REMARK 500 PHE A 181 133.70 -38.59 REMARK 500 SER A 191 90.21 16.54 REMARK 500 PRO A 196 171.46 -58.61 REMARK 500 ASN A 213 69.10 -102.46 REMARK 500 ALA A 223 107.49 -49.70 REMARK 500 PHE A 232 62.97 -100.16 REMARK 500 GLN A 233 -44.46 -137.63 REMARK 500 SER A 254 -162.95 -123.35 REMARK 500 HIS A 257 48.72 -99.48 REMARK 500 PRO A 264 96.48 -64.14 REMARK 500 ILE A 269 -39.57 -132.17 REMARK 500 ARG A 272 18.26 -164.01 REMARK 500 SER B 39 58.70 -109.57 REMARK 500 ASP B 40 99.96 -52.95 REMARK 500 MET B 44 39.36 -95.56 REMARK 500 ASN B 45 81.93 -4.50 REMARK 500 PRO B 62 36.46 -94.53 REMARK 500 ALA B 63 -67.19 -109.92 REMARK 500 HIS B 79 60.58 -151.57 REMARK 500 TRP B 105 49.11 70.58 REMARK 500 GLU B 123 -53.52 82.30 REMARK 500 TYR B 132 -122.16 59.33 REMARK 500 PHE B 137 41.59 -96.58 REMARK 500 PRO B 170 -31.81 -39.06 REMARK 500 ILE B 171 -62.87 -100.43 REMARK 500 PHE B 181 133.97 -36.34 REMARK 500 SER B 191 90.92 13.43 REMARK 500 PRO B 196 170.75 -59.16 REMARK 500 ASN B 213 69.11 -102.16 REMARK 500 ALA B 223 106.22 -49.28 REMARK 500 GLN B 233 -43.49 -138.28 REMARK 500 SER B 254 -164.33 -122.97 REMARK 500 HIS B 257 50.61 -99.06 REMARK 500 LYS B 261 -169.57 -120.64 REMARK 500 PRO B 264 94.16 -62.86 REMARK 500 ARG B 272 19.26 -162.81 REMARK 500 SER C 39 60.88 -107.50 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 8PQN A 1 273 UNP P15559 NQO1_HUMAN 2 274 DBREF 8PQN B 1 273 UNP P15559 NQO1_HUMAN 2 274 DBREF 8PQN C 1 273 UNP P15559 NQO1_HUMAN 2 274 DBREF 8PQN D 1 273 UNP P15559 NQO1_HUMAN 2 274 SEQRES 1 A 273 VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER GLU SEQRES 2 A 273 ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA ALA SEQRES 3 A 273 ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SER SEQRES 4 A 273 ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER ARG SEQRES 5 A 273 LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN PHE SEQRES 6 A 273 GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU GLY SEQRES 7 A 273 HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS LEU SEQRES 8 A 273 GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU GLN SEQRES 9 A 273 TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE GLU SEQRES 10 A 273 ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA ALA SEQRES 11 A 273 MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA VAL SEQRES 12 A 273 LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SER SEQRES 13 A 273 LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU TRP SEQRES 14 A 273 PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE GLN SEQRES 15 A 273 VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS THR SEQRES 16 A 273 PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP LYS SEQRES 17 A 273 LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU TYR SEQRES 18 A 273 PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN ALA SEQRES 19 A 273 GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU LYS SEQRES 20 A 273 ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU GLY SEQRES 21 A 273 LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG LYS SEQRES 1 B 273 VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER GLU SEQRES 2 B 273 ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA ALA SEQRES 3 B 273 ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SER SEQRES 4 B 273 ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER ARG SEQRES 5 B 273 LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN PHE SEQRES 6 B 273 GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU GLY SEQRES 7 B 273 HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS LEU SEQRES 8 B 273 GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU GLN SEQRES 9 B 273 TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE GLU SEQRES 10 B 273 ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA ALA SEQRES 11 B 273 MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA VAL SEQRES 12 B 273 LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SER SEQRES 13 B 273 LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU TRP SEQRES 14 B 273 PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE GLN SEQRES 15 B 273 VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS THR SEQRES 16 B 273 PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP LYS SEQRES 17 B 273 LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU TYR SEQRES 18 B 273 PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN ALA SEQRES 19 B 273 GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU LYS SEQRES 20 B 273 ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU GLY SEQRES 21 B 273 LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG LYS SEQRES 1 C 273 VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER GLU SEQRES 2 C 273 ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA ALA SEQRES 3 C 273 ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SER SEQRES 4 C 273 ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER ARG SEQRES 5 C 273 LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN PHE SEQRES 6 C 273 GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU GLY SEQRES 7 C 273 HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS LEU SEQRES 8 C 273 GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU GLN SEQRES 9 C 273 TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE GLU SEQRES 10 C 273 ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA ALA SEQRES 11 C 273 MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA VAL SEQRES 12 C 273 LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SER SEQRES 13 C 273 LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU TRP SEQRES 14 C 273 PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE GLN SEQRES 15 C 273 VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS THR SEQRES 16 C 273 PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP LYS SEQRES 17 C 273 LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU TYR SEQRES 18 C 273 PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN ALA SEQRES 19 C 273 GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU LYS SEQRES 20 C 273 ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU GLY SEQRES 21 C 273 LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG LYS SEQRES 1 D 273 VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER GLU SEQRES 2 D 273 ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA ALA SEQRES 3 D 273 ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SER SEQRES 4 D 273 ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER ARG SEQRES 5 D 273 LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN PHE SEQRES 6 D 273 GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU GLY SEQRES 7 D 273 HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS LEU SEQRES 8 D 273 GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU GLN SEQRES 9 D 273 TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE GLU SEQRES 10 D 273 ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA ALA SEQRES 11 D 273 MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA VAL SEQRES 12 D 273 LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SER SEQRES 13 D 273 LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU TRP SEQRES 14 D 273 PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE GLN SEQRES 15 D 273 VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS THR SEQRES 16 D 273 PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP LYS SEQRES 17 D 273 LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU TYR SEQRES 18 D 273 PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN ALA SEQRES 19 D 273 GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU LYS SEQRES 20 D 273 ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU GLY SEQRES 21 D 273 LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG LYS HET FAD A 301 53 HET 978 B 301 27 HET 978 C 301 27 HET FAD D 301 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 978 ~{N}-[4-[(3-METHYLPHENYL)CARBONYLAMINO]PHENYL]-5-NITRO- HETNAM 2 978 FURAN-2-CARBOXAMIDE FORMUL 5 FAD 2(C27 H33 N9 O15 P2) FORMUL 6 978 2(C19 H15 N3 O5) HELIX 1 AA1 SER A 16 LYS A 31 1 16 HELIX 2 AA2 SER A 51 ILE A 55 5 5 HELIX 3 AA3 GLN A 66 GLY A 78 1 13 HELIX 4 AA4 SER A 81 ALA A 94 1 14 HELIX 5 AA5 PRO A 109 PHE A 120 1 12 HELIX 6 AA6 MET A 131 GLY A 135 5 5 HELIX 7 AA7 MET A 164 SER A 173 1 10 HELIX 8 AA8 ILE A 175 GLY A 180 1 6 HELIX 9 AA9 ASP A 198 LEU A 211 1 14 HELIX 10 AB1 PRO A 224 PHE A 228 5 5 HELIX 11 AB2 LYS A 239 GLU A 246 1 8 HELIX 12 AB3 SER B 16 LYS B 31 1 16 HELIX 13 AB4 SER B 51 ILE B 55 5 5 HELIX 14 AB5 GLN B 66 GLY B 78 1 13 HELIX 15 AB6 SER B 81 ALA B 94 1 14 HELIX 16 AB7 PRO B 109 PHE B 120 1 12 HELIX 17 AB8 MET B 131 GLY B 135 5 5 HELIX 18 AB9 MET B 164 SER B 173 1 10 HELIX 19 AC1 ILE B 175 GLY B 180 1 6 HELIX 20 AC2 ASP B 198 LEU B 211 1 14 HELIX 21 AC3 PRO B 224 PHE B 228 5 5 HELIX 22 AC4 GLU B 241 GLU B 246 1 6 HELIX 23 AC5 SER C 16 LYS C 31 1 16 HELIX 24 AC6 SER C 51 ILE C 55 5 5 HELIX 25 AC7 GLN C 66 GLY C 78 1 13 HELIX 26 AC8 SER C 81 ALA C 94 1 14 HELIX 27 AC9 PRO C 109 PHE C 120 1 12 HELIX 28 AD1 MET C 131 GLY C 135 5 5 HELIX 29 AD2 MET C 164 SER C 173 1 10 HELIX 30 AD3 ILE C 175 GLY C 180 1 6 HELIX 31 AD4 ASP C 198 LEU C 211 1 14 HELIX 32 AD5 PRO C 224 PHE C 228 5 5 HELIX 33 AD6 GLU C 241 GLU C 246 1 6 HELIX 34 AD7 SER D 16 LYS D 31 1 16 HELIX 35 AD8 SER D 51 ILE D 55 5 5 HELIX 36 AD9 GLN D 66 GLY D 78 1 13 HELIX 37 AE1 SER D 81 ALA D 94 1 14 HELIX 38 AE2 PRO D 109 PHE D 120 1 12 HELIX 39 AE3 MET D 131 GLY D 135 5 5 HELIX 40 AE4 MET D 164 SER D 173 1 10 HELIX 41 AE5 ILE D 175 GLY D 180 1 6 HELIX 42 AE6 ASP D 198 GLU D 212 1 15 HELIX 43 AE7 PRO D 224 PHE D 228 5 5 HELIX 44 AE8 GLU D 241 GLU D 246 1 6 SHEET 1 AA1 5 VAL A 37 GLU A 38 0 SHEET 2 AA1 5 LEU A 6 LEU A 9 1 N ILE A 7 O VAL A 37 SHEET 3 AA1 5 LEU A 96 PRO A 102 1 O ILE A 98 N LEU A 6 SHEET 4 AA1 5 LYS A 141 THR A 147 1 O VAL A 143 N VAL A 97 SHEET 5 AA1 5 GLN A 182 VAL A 183 1 O GLN A 182 N ALA A 142 SHEET 1 AA2 5 VAL A 37 GLU A 38 0 SHEET 2 AA2 5 LEU A 6 LEU A 9 1 N ILE A 7 O VAL A 37 SHEET 3 AA2 5 LEU A 96 PRO A 102 1 O ILE A 98 N LEU A 6 SHEET 4 AA2 5 LYS A 141 THR A 147 1 O VAL A 143 N VAL A 97 SHEET 5 AA2 5 GLN A 187 THR A 189 1 O GLN A 187 N ILE A 146 SHEET 1 AA3 5 VAL B 37 GLU B 38 0 SHEET 2 AA3 5 LEU B 6 LEU B 9 1 N ILE B 7 O VAL B 37 SHEET 3 AA3 5 LEU B 96 PRO B 102 1 O ILE B 98 N LEU B 6 SHEET 4 AA3 5 LYS B 141 THR B 147 1 O VAL B 143 N VAL B 97 SHEET 5 AA3 5 GLN B 182 VAL B 183 1 O GLN B 182 N ALA B 142 SHEET 1 AA4 5 VAL B 37 GLU B 38 0 SHEET 2 AA4 5 LEU B 6 LEU B 9 1 N ILE B 7 O VAL B 37 SHEET 3 AA4 5 LEU B 96 PRO B 102 1 O ILE B 98 N LEU B 6 SHEET 4 AA4 5 LYS B 141 THR B 147 1 O VAL B 143 N VAL B 97 SHEET 5 AA4 5 GLN B 187 THR B 189 1 O GLN B 187 N ILE B 146 SHEET 1 AA5 5 VAL C 37 GLU C 38 0 SHEET 2 AA5 5 LEU C 6 LEU C 9 1 N ILE C 7 O VAL C 37 SHEET 3 AA5 5 LEU C 96 PRO C 102 1 O ILE C 98 N LEU C 6 SHEET 4 AA5 5 LYS C 141 THR C 147 1 O VAL C 143 N VAL C 97 SHEET 5 AA5 5 GLN C 182 VAL C 183 1 O GLN C 182 N ALA C 142 SHEET 1 AA6 5 VAL C 37 GLU C 38 0 SHEET 2 AA6 5 LEU C 6 LEU C 9 1 N ILE C 7 O VAL C 37 SHEET 3 AA6 5 LEU C 96 PRO C 102 1 O ILE C 98 N LEU C 6 SHEET 4 AA6 5 LYS C 141 THR C 147 1 O VAL C 143 N VAL C 97 SHEET 5 AA6 5 GLN C 187 THR C 189 1 O GLN C 187 N LEU C 144 SHEET 1 AA7 5 VAL D 37 GLU D 38 0 SHEET 2 AA7 5 LEU D 6 LEU D 9 1 N ILE D 7 O VAL D 37 SHEET 3 AA7 5 LEU D 96 PRO D 102 1 O ILE D 98 N LEU D 6 SHEET 4 AA7 5 LYS D 141 THR D 147 1 O VAL D 143 N VAL D 97 SHEET 5 AA7 5 GLN D 182 VAL D 183 1 O GLN D 182 N ALA D 142 SHEET 1 AA8 5 VAL D 37 GLU D 38 0 SHEET 2 AA8 5 LEU D 6 LEU D 9 1 N ILE D 7 O VAL D 37 SHEET 3 AA8 5 LEU D 96 PRO D 102 1 O ILE D 98 N LEU D 6 SHEET 4 AA8 5 LYS D 141 THR D 147 1 O VAL D 143 N VAL D 97 SHEET 5 AA8 5 GLN D 187 THR D 189 1 O GLN D 187 N LEU D 144 CRYST1 70.748 178.369 210.479 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004751 0.00000