data_8PVJ # _entry.id 8PVJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PVJ pdb_00008pvj 10.2210/pdb8pvj/pdb WWPDB D_1292131856 ? ? EMDB EMD-17968 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of lumazine synthase determined by cryoEM at 100 keV' _pdbx_database_related.db_id EMD-17968 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PVJ _pdbx_database_status.recvd_initial_deposition_date 2023-07-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McMullan, G.' 1 ? 'Naydenova, K.' 2 ? 'Mihaylov, D.' 3 ? 'Peet, M.J.' 4 ? 'Wilson, H.' 5 ? 'Yamashita, K.' 6 ? 'Dickerson, J.L.' 7 ? 'Chen, S.' 8 ? 'Cannone, G.' 9 ? 'Lee, Y.' 10 ? 'Hutchings, K.A.' 11 ? 'Gittins, O.' 12 ? 'Sobhy, M.' 13 ? 'Wells, T.' 14 ? 'El-Gomati, M.M.' 15 ? 'Dalby, J.' 16 ? 'Meffert, M.' 17 ? 'Schulze-Briese, C.' 18 ? 'Henderson, R.' 19 ? 'Russo, C.J.' 20 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 120 _citation.language ? _citation.page_first e2312905120 _citation.page_last e2312905120 _citation.title 'Structure determination by cryoEM at 100 keV.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2312905120 _citation.pdbx_database_id_PubMed 38011573 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McMullan, G.' 1 0000-0001-5449-8850 primary 'Naydenova, K.' 2 0000-0001-5533-5930 primary 'Mihaylov, D.' 3 ? primary 'Yamashita, K.' 4 0000-0002-5442-7582 primary 'Peet, M.J.' 5 0000-0002-0162-0063 primary 'Wilson, H.' 6 0000-0001-9411-2246 primary 'Dickerson, J.L.' 7 0000-0001-5049-4000 primary 'Chen, S.' 8 0000-0002-9472-4397 primary 'Cannone, G.' 9 0000-0002-4381-2522 primary 'Lee, Y.' 10 0000-0002-8040-3648 primary 'Hutchings, K.A.' 11 0000-0001-5760-3193 primary 'Gittins, O.' 12 0000-0002-3818-3952 primary 'Sobhy, M.A.' 13 0000-0002-1964-9497 primary 'Wells, T.' 14 0009-0009-0575-5318 primary 'El-Gomati, M.M.' 15 0000-0002-7782-6965 primary 'Dalby, J.' 16 0009-0007-9046-8609 primary 'Meffert, M.' 17 0000-0001-5637-9791 primary 'Schulze-Briese, C.' 18 0000-0002-8850-3926 primary 'Henderson, R.' 19 0000-0003-1444-0528 primary 'Russo, C.J.' 20 0000-0002-4442-744X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8PVJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8PVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '6,7-dimethyl-8-ribityllumazine synthase' _entity.formula_weight 17769.350 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.5.1.78 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DMRL synthase,LS,Lumazine synthase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQIYEGKLTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGV LIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLRWSHPQF EK ; _entity_poly.pdbx_seq_one_letter_code_can ;MQIYEGKLTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGV LIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLRWSHPQF EK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 TYR n 1 5 GLU n 1 6 GLY n 1 7 LYS n 1 8 LEU n 1 9 THR n 1 10 ALA n 1 11 GLU n 1 12 GLY n 1 13 LEU n 1 14 ARG n 1 15 PHE n 1 16 GLY n 1 17 ILE n 1 18 VAL n 1 19 ALA n 1 20 SER n 1 21 ARG n 1 22 PHE n 1 23 ASN n 1 24 HIS n 1 25 ALA n 1 26 LEU n 1 27 VAL n 1 28 ASP n 1 29 ARG n 1 30 LEU n 1 31 VAL n 1 32 GLU n 1 33 GLY n 1 34 ALA n 1 35 ILE n 1 36 ASP n 1 37 CYS n 1 38 ILE n 1 39 VAL n 1 40 ARG n 1 41 HIS n 1 42 GLY n 1 43 GLY n 1 44 ARG n 1 45 GLU n 1 46 GLU n 1 47 ASP n 1 48 ILE n 1 49 THR n 1 50 LEU n 1 51 VAL n 1 52 ARG n 1 53 VAL n 1 54 PRO n 1 55 GLY n 1 56 SER n 1 57 TRP n 1 58 GLU n 1 59 ILE n 1 60 PRO n 1 61 VAL n 1 62 ALA n 1 63 ALA n 1 64 GLY n 1 65 GLU n 1 66 LEU n 1 67 ALA n 1 68 ARG n 1 69 LYS n 1 70 GLU n 1 71 ASP n 1 72 ILE n 1 73 ASP n 1 74 ALA n 1 75 VAL n 1 76 ILE n 1 77 ALA n 1 78 ILE n 1 79 GLY n 1 80 VAL n 1 81 LEU n 1 82 ILE n 1 83 ARG n 1 84 GLY n 1 85 ALA n 1 86 THR n 1 87 PRO n 1 88 HIS n 1 89 PHE n 1 90 ASP n 1 91 TYR n 1 92 ILE n 1 93 ALA n 1 94 SER n 1 95 GLU n 1 96 VAL n 1 97 SER n 1 98 LYS n 1 99 GLY n 1 100 LEU n 1 101 ALA n 1 102 ASN n 1 103 LEU n 1 104 SER n 1 105 LEU n 1 106 GLU n 1 107 LEU n 1 108 ARG n 1 109 LYS n 1 110 PRO n 1 111 ILE n 1 112 THR n 1 113 PHE n 1 114 GLY n 1 115 VAL n 1 116 ILE n 1 117 THR n 1 118 ALA n 1 119 ASP n 1 120 THR n 1 121 LEU n 1 122 GLU n 1 123 GLN n 1 124 ALA n 1 125 ILE n 1 126 GLU n 1 127 ARG n 1 128 ALA n 1 129 GLY n 1 130 THR n 1 131 LYS n 1 132 HIS n 1 133 GLY n 1 134 ASN n 1 135 LYS n 1 136 GLY n 1 137 TRP n 1 138 GLU n 1 139 ALA n 1 140 ALA n 1 141 LEU n 1 142 SER n 1 143 ALA n 1 144 ILE n 1 145 GLU n 1 146 MET n 1 147 ALA n 1 148 ASN n 1 149 LEU n 1 150 PHE n 1 151 LYS n 1 152 SER n 1 153 LEU n 1 154 ARG n 1 155 TRP n 1 156 SER n 1 157 HIS n 1 158 PRO n 1 159 GLN n 1 160 PHE n 1 161 GLU n 1 162 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 162 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ribH, aq_132' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63363 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RISB_AQUAE _struct_ref.pdbx_db_accession O66529 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQIYEGKLTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGV LIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PVJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 154 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O66529 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8PVJ TRP A 155 ? UNP O66529 ? ? 'expression tag' 155 1 1 8PVJ SER A 156 ? UNP O66529 ? ? 'expression tag' 156 2 1 8PVJ HIS A 157 ? UNP O66529 ? ? 'expression tag' 157 3 1 8PVJ PRO A 158 ? UNP O66529 ? ? 'expression tag' 158 4 1 8PVJ GLN A 159 ? UNP O66529 ? ? 'expression tag' 159 5 1 8PVJ PHE A 160 ? UNP O66529 ? ? 'expression tag' 160 6 1 8PVJ GLU A 161 ? UNP O66529 ? ? 'expression tag' 161 7 1 8PVJ LYS A 162 ? UNP O66529 ? ? 'expression tag' 162 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PVJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.vector[2] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 1 0 0 0 0 1 0 0 0 0 1 0 ? 2 generate 0.309016994 -0.499999578 0.809017255 50.633324 0.499999578 0.809017316 0.309016833 -81.926551 -0.809017255 0.309016833 0.499999678 132.560099 ? 3 generate -0.809016994 -0.309016734 0.500000161 214.48653 0.309016734 0.500000843 0.809016573 -81.9266069 -0.500000161 0.809016573 -0.309017837 132.560189 ? 4 generate -0.809016994 0.309016734 -0.500000161 265.120056 -0.309016734 0.500000843 0.809016573 -9.04142101e-05 0.500000161 0.809016573 -0.309017837 0.000146293435 ? 5 generate 0.309016994 0.499999578 -0.809017255 132.56009 -0.499999578 0.809017316 0.309016833 50.6333372 0.809017255 0.309016833 0.499999678 -81.9265561 ? 6 generate 0.499999678 -0.809017255 0.309016833 132.560099 0.809017255 0.309016994 -0.499999578 50.633324 0.309016833 0.499999578 0.809017316 -81.926551 ? 7 generate -0.309017837 -0.500000161 0.809016573 132.560189 0.500000161 -0.809016994 -0.309016734 214.48653 0.809016573 0.309016734 0.500000843 -81.9266069 ? 8 generate -0.309017837 0.500000161 0.809016573 0.000146293435 -0.500000161 -0.809016994 0.309016734 265.120056 0.809016573 -0.309016734 0.500000843 -9.04142101e-05 ? 9 generate 0.499999678 0.809017255 0.309016833 -81.9265561 -0.809017255 0.309016994 0.499999578 132.56009 0.309016833 -0.499999578 0.809017316 50.6333372 ? 10 generate 1.68874961e-07 5.36935615e-08 1 -2.95036813e-05 1 -1.15181379e-07 -1.68874954e-07 3.76545104e-05 1.1518137e-07 1 -5.36935808e-08 -8.15082032e-06 ? 11 generate 1.6887496e-07 1 1.15181371e-07 -3.76545045e-05 5.3693562e-08 -1.1518138e-07 1 8.15082618e-06 1 -1.68874954e-07 -5.36935812e-08 2.95036871e-05 ? 12 generate -0.5 -0.809017081 0.309016767 265.120042 0.80901666 -0.309016593 0.500000789 -0.00011343249 -0.309017871 0.500000107 0.809016593 0.000155088677 ? 13 generate -0.5 0.80901666 -0.309017871 132.560161 -0.809017081 -0.309016593 0.500000107 214.48653 0.309016767 0.500000789 0.809016593 -81.9266069 ? 14 generate 0.309016994 0.499999318 0.809017416 -81.926551 0.499999318 -0.809017515 0.309016734 132.560194 0.809017416 0.309016734 -0.499999479 50.6333241 ? 15 generate -1 -3.73475425e-13 -1.2032e-06 265.120159 -3.73230495e-13 -1 6.206e-07 265.119918 -1.2032e-06 6.206e-07 1 7.72295774e-05 ? 16 generate 0.809016279 -0.309018627 0.500000148 0.000291554105 0.309016519 -0.5 -0.809017176 265.120087 0.500001451 0.809016371 -0.309016279 -0.000204484979 ? 17 generate 0.809016279 0.309016519 0.500001451 -81.9266201 -0.309018627 -0.5 0.809016371 132.560299 0.500000148 -0.809017176 -0.309016279 214.486495 ? 18 generate -0.5 -0.809016693 -0.309017784 347.04665 0.809017498 -0.309017321 -0.499998983 132.559842 0.309015676 -0.500000286 0.809017321 50.6335838 ? 19 generate -0.5 0.809017498 0.309015676 50.6335225 -0.809016693 -0.309017321 -0.500000286 347.046627 -0.309017784 -0.499998983 0.809017321 132.559927 ? 20 generate 0.809016518 -0.309017704 -0.500000333 132.560201 -0.309016761 0.500000477 -0.809016789 214.486464 0.500000915 0.809016429 0.309016994 -81.9266319 ? 21 generate 0.499998752 -0.809017909 -0.309016617 214.486822 -0.809017327 -0.309015747 -0.500000233 347.046495 0.309018142 0.49999929 -0.809016994 132.559942 ? 22 generate 0.499998752 -0.809017327 0.309018142 132.560057 -0.809017909 -0.309015747 0.49999929 214.486636 -0.309016617 -0.500000233 -0.809016994 347.046566 ? 23 generate 0.809016518 -0.309016761 0.500000915 -8.90124399e-05 -0.309017704 0.500000477 0.809016429 0.000105849606 -0.500000333 -0.809016789 0.309016994 265.120017 ? 24 generate 0.309016994 -0.500000072 -0.80901695 265.120004 0.500001076 0.809016556 -0.309016401 -0.000163124605 0.809016329 -0.309018026 0.500000439 0.000166771333 ? 25 generate -0.809016994 -0.309016035 -0.500000593 347.046537 0.309018663 0.499998852 -0.809017066 132.55994 0.499998968 -0.80901807 -0.309015846 214.486713 ? 26 generate -0.809016994 0.309018663 0.499998968 132.559915 -0.309016035 0.499998852 -0.80901807 214.486753 -0.500000593 -0.809017066 -0.309015846 347.046522 ? 27 generate 0.309016994 0.500001076 0.809016329 -81.92664 -0.500000072 0.809016556 -0.309018026 132.560204 -0.80901695 -0.309016401 0.500000439 214.486443 ? 28 generate -0.499998958 0.809017577 0.309017155 50.6331777 0.809017577 0.309016151 0.499999578 -81.9264951 0.309017155 0.499999578 -0.809017193 132.560061 ? 29 generate -0.809016672 -0.309017577 -0.500000161 347.046641 -0.309017577 -0.499998958 0.809017416 132.559883 -0.500000161 0.809017416 0.30901563 50.6335607 ? 30 generate 0.80901721 0.309016384 0.500000028 -81.926537 0.309017388 0.499999784 -0.809016977 132.559974 -0.499999407 0.809017361 0.309016994 50.6332872 ? 31 generate 0.500000566 0.809016401 0.309017632 -81.9266664 0.809017022 -0.30901756 -0.499999606 132.560019 -0.309016007 0.50000061 -0.809016994 214.486374 ? 32 generate 0.500000566 0.809017022 -0.309016007 -0.000209467224 0.809016401 -0.30901756 0.50000061 7.2711595e-05 0.309017632 -0.499999606 -0.809016994 265.119863 ? 33 generate 0.80901721 0.309017388 -0.499999407 50.633255 0.309016384 0.499999784 0.809017361 -81.9265246 0.500000028 -0.809016977 0.309016994 132.559994 ? 34 generate 0.500000367 -0.809016939 -0.309016545 214.48647 0.809016456 0.309016994 0.500000871 -81.9266296 -0.30901781 -0.500000089 0.809016628 132.560168 ? 35 generate -0.309016035 -0.500000449 -0.809017083 347.04653 0.499999184 -0.809016994 0.309018314 132.559933 -0.809017865 -0.309016268 0.49999904 214.486732 ? 36 generate -0.309016035 0.499999184 -0.809017865 214.486682 -0.500000449 -0.809016994 -0.309016268 347.046549 -0.809017083 0.309018314 0.49999904 132.559964 ? 37 generate 0.500000367 0.809016456 -0.30901781 0.000130840014 -0.809016939 0.309016994 -0.500000089 265.120005 -0.309016545 0.500000871 0.809016628 -0.000126332785 ? 38 generate 0.809017201 -0.309016746 -0.499999818 132.559916 0.309016908 -0.5 0.809017028 50.6334216 -0.499999719 -0.809017089 -0.309017201 347.046588 ? 39 generate 0.809017201 0.309016908 -0.499999719 50.6333613 -0.309016746 -0.5 -0.809017089 347.046565 -0.499999818 0.809017028 -0.309017201 132.559999 ? 40 generate 1.24413229e-06 -1.40470472e-07 -1 265.119854 1 -1.38460104e-06 1.24413248e-06 1.86207413e-05 -1.38460121e-06 -1 1.4046875e-07 265.120165 ? 41 generate 1.24413229e-06 1 -1.38460121e-06 1.86207903e-05 -1.40470472e-07 -1.38460104e-06 -1 265.120202 -1 1.24413248e-06 1.40468749e-07 265.119816 ? 42 generate 4.4686898e-07 -1 5.0835724e-07 265.119873 -9.5522602e-07 5.08356813e-07 1 5.92370596e-05 -1 -4.46869465e-07 -9.55225792e-07 265.120186 ? 43 generate 4.4686898e-07 -9.5522602e-07 -1 265.120067 -1 5.08356813e-07 -4.46869465e-07 265.119992 5.08357239e-07 1 -9.55225793e-07 5.9236973e-05 ? 44 generate -0.309016639 0.500000087 -0.809017076 214.486538 0.500000707 0.809016639 0.30901678 -81.9266038 0.809016693 -0.309017784 -0.5 132.560145 ? 45 generate -0.309016639 0.500000707 0.809016693 -0.000100893135 0.500000087 0.809016639 -0.309017784 0.000140224081 -0.809017076 0.30901678 -0.5 265.120039 ? 46 generate -0.80901711 0.309016966 0.499999831 132.560041 0.309016966 -0.49999979 0.809017135 50.6333718 0.499999831 0.809017135 0.3090169 -81.9265692 ? 47 generate -2.19623925e-06 -1 -8.08350253e-07 265.120398 1.38789382e-06 8.08347205e-07 -1 265.119709 1 -2.19624037e-06 1.38789204e-06 0.000107155101 ? 48 generate -2.19623925e-06 1.38789382e-06 1 0.000107154718 -1 8.08347205e-07 -2.19624037e-06 265.120184 -8.08350252e-07 -1 1.38789204e-06 265.119923 ? 49 generate 0.309017443 -0.500000871 -0.809016285 265.119962 -0.500000871 -0.809016395 0.309017155 265.120015 -0.809016285 0.309017155 -0.500001049 265.120024 ? 50 generate -0.500002512 -0.809015586 0.309016617 265.120196 -0.809015586 0.309019013 -0.500001032 265.119682 0.309016617 -0.500001032 -0.809016501 265.120121 ? 51 generate -0.309017538 -0.499999742 -0.809016946 347.046617 -0.499999043 0.809017538 -0.30901712 132.559818 0.809017378 0.309015989 -0.5 50.6334968 ? 52 generate -0.309017538 -0.499999043 0.809017378 132.559894 -0.499999742 0.809017538 0.309015989 50.6334414 -0.809016946 -0.30901712 -0.5 347.046596 ? 53 generate -0.499999085 0.809017399 -0.309017416 132.559881 0.809017399 0.309015908 -0.500000017 50.6335071 -0.309017416 -0.500000017 -0.809016823 347.046621 ? 54 generate -0.50000022 -0.809017155 -0.309016218 347.046533 -0.809017155 0.30901809 0.499999062 132.56 -0.309016218 0.499999062 -0.809017871 214.486723 ? 55 generate -1 6.44e-07 -3.70229265e-13 265.119915 6.44e-07 1 -1.1494e-06 6.6995939e-05 -3.69984335e-13 -1.1494e-06 -1 265.120152 ? 56 generate 0.30901506 -0.500000199 0.80901761 50.6336156 -0.500000199 -0.80901656 -0.309017809 347.046662 0.80901761 -0.309017809 -0.4999985 132.559828 ? 57 generate -0.809017924 -0.309016205 0.499998983 214.486739 -0.309016205 -0.50000012 -0.809017222 347.046527 0.499998983 -0.809017222 0.309018044 132.560026 ? 58 generate 1 -1.4256e-06 7.37e-07 9.12809867e-05 -1.4256e-06 -1 -5.25456065e-13 265.120189 7.37e-07 -5.25211135e-13 -1 265.119902 ? 59 generate -0.80901623 0.309017183 -0.500001121 265.120022 0.309017183 -0.500001392 -0.809016062 265.120036 -0.500001121 -0.809016062 0.309017621 265.119942 ? 60 generate 0.309017839 0.49999935 -0.809017073 132.559985 0.49999935 -0.809017614 -0.309016423 214.486678 -0.809017073 -0.309016423 -0.500000225 347.04655 ? # _struct.entry_id 8PVJ _struct.title 'Structure of lumazine synthase determined by cryoEM at 100 keV' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PVJ _struct_keywords.text 'LUMAZINE SYNTHASE, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 23 ? HIS A 41 ? ASN A 23 HIS A 41 1 ? 19 HELX_P HELX_P2 AA2 ARG A 44 ? GLU A 46 ? ARG A 44 GLU A 46 5 ? 3 HELX_P HELX_P3 AA3 GLY A 55 ? TRP A 57 ? GLY A 55 TRP A 57 5 ? 3 HELX_P HELX_P4 AA4 GLU A 58 ? ARG A 68 ? GLU A 58 ARG A 68 1 ? 11 HELX_P HELX_P5 AA5 PRO A 87 ? ARG A 108 ? PRO A 87 ARG A 108 1 ? 22 HELX_P HELX_P6 AA6 THR A 120 ? ARG A 127 ? THR A 120 ARG A 127 1 ? 8 HELX_P HELX_P7 AA7 LYS A 135 ? TRP A 155 ? LYS A 135 TRP A 155 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 48 ? VAL A 53 ? ILE A 48 VAL A 53 AA1 2 PHE A 15 ? SER A 20 ? PHE A 15 SER A 20 AA1 3 ALA A 74 ? ILE A 82 ? ALA A 74 ILE A 82 AA1 4 ILE A 111 ? ALA A 118 ? ILE A 111 ALA A 118 AA2 1 ALA A 128 ? THR A 130 ? ALA A 128 THR A 130 AA2 2 GLY A 133 ? ASN A 134 ? GLY A 133 ASN A 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 49 ? O THR A 49 N ILE A 17 ? N ILE A 17 AA1 2 3 N VAL A 18 ? N VAL A 18 O ILE A 78 ? O ILE A 78 AA1 3 4 N LEU A 81 ? N LEU A 81 O ILE A 116 ? O ILE A 116 AA2 1 2 N GLY A 129 ? N GLY A 129 O GLY A 133 ? O GLY A 133 # _atom_sites.entry_id 8PVJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 MET 146 146 146 MET MET A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 SER 156 156 ? ? ? A . n A 1 157 HIS 157 157 ? ? ? A . n A 1 158 PRO 158 158 ? ? ? A . n A 1 159 GLN 159 159 ? ? ? A . n A 1 160 PHE 160 160 ? ? ? A . n A 1 161 GLU 161 161 ? ? ? A . n A 1 162 LYS 162 162 ? ? ? A . n # _pdbx_contact_author.id 1 _pdbx_contact_author.email crusso@mrc-lmb.cam.ac.uk _pdbx_contact_author.name_first Christopher _pdbx_contact_author.name_last Russo _pdbx_contact_author.name_mi J. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4442-744X # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.309017 -0.500000 0.809017 50.63332 0.500000 0.809017 0.309017 -81.92655 -0.809017 0.309017 0.500000 132.56010 3 'point symmetry operation' ? ? -0.809017 -0.309017 0.500000 214.48653 0.309017 0.500001 0.809017 -81.92661 -0.500000 0.809017 -0.309018 132.56019 4 'point symmetry operation' ? ? -0.809017 0.309017 -0.500000 265.12006 -0.309017 0.500001 0.809017 -0.00009 0.500000 0.809017 -0.309018 0.00015 5 'point symmetry operation' ? ? 0.309017 0.500000 -0.809017 132.56009 -0.500000 0.809017 0.309017 50.63334 0.809017 0.309017 0.500000 -81.92656 6 'point symmetry operation' ? ? 0.500000 -0.809017 0.309017 132.56010 0.809017 0.309017 -0.500000 50.63332 0.309017 0.500000 0.809017 -81.92655 7 'point symmetry operation' ? ? -0.309018 -0.500000 0.809017 132.56019 0.500000 -0.809017 -0.309017 214.48653 0.809017 0.309017 0.500001 -81.92661 8 'point symmetry operation' ? ? -0.309018 0.500000 0.809017 0.00015 -0.500000 -0.809017 0.309017 265.12006 0.809017 -0.309017 0.500001 -0.00009 9 'point symmetry operation' ? ? 0.500000 0.809017 0.309017 -81.92656 -0.809017 0.309017 0.500000 132.56009 0.309017 -0.500000 0.809017 50.63334 10 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 -0.00003 1.000000 -0.000000 -0.000000 0.00004 0.000000 1.000000 -0.000000 -0.00001 11 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 -0.00004 0.000000 -0.000000 1.000000 0.00001 1.000000 -0.000000 -0.000000 0.00003 12 'point symmetry operation' ? ? -0.500000 -0.809017 0.309017 265.12004 0.809017 -0.309017 0.500001 -0.00011 -0.309018 0.500000 0.809017 0.00016 13 'point symmetry operation' ? ? -0.500000 0.809017 -0.309018 132.56016 -0.809017 -0.309017 0.500000 214.48653 0.309017 0.500001 0.809017 -81.92661 14 'point symmetry operation' ? ? 0.309017 0.499999 0.809017 -81.92655 0.499999 -0.809018 0.309017 132.56019 0.809017 0.309017 -0.499999 50.63332 15 'point symmetry operation' ? ? -1.000000 -0.000000 -0.000001 265.12016 -0.000000 -1.000000 0.000001 265.11992 -0.000001 0.000001 1.000000 0.00008 16 'point symmetry operation' ? ? 0.809016 -0.309019 0.500000 0.00029 0.309017 -0.500000 -0.809017 265.12009 0.500001 0.809016 -0.309016 -0.00020 17 'point symmetry operation' ? ? 0.809016 0.309017 0.500001 -81.92662 -0.309019 -0.500000 0.809016 132.56030 0.500000 -0.809017 -0.309016 214.48650 18 'point symmetry operation' ? ? -0.500000 -0.809017 -0.309018 347.04665 0.809017 -0.309017 -0.499999 132.55984 0.309016 -0.500000 0.809017 50.63358 19 'point symmetry operation' ? ? -0.500000 0.809017 0.309016 50.63352 -0.809017 -0.309017 -0.500000 347.04663 -0.309018 -0.499999 0.809017 132.55993 20 'point symmetry operation' ? ? 0.809017 -0.309018 -0.500000 132.56020 -0.309017 0.500000 -0.809017 214.48646 0.500001 0.809016 0.309017 -81.92663 21 'point symmetry operation' ? ? 0.499999 -0.809018 -0.309017 214.48682 -0.809017 -0.309016 -0.500000 347.04650 0.309018 0.499999 -0.809017 132.55994 22 'point symmetry operation' ? ? 0.499999 -0.809017 0.309018 132.56006 -0.809018 -0.309016 0.499999 214.48664 -0.309017 -0.500000 -0.809017 347.04657 23 'point symmetry operation' ? ? 0.809017 -0.309017 0.500001 -0.00009 -0.309018 0.500000 0.809016 0.00011 -0.500000 -0.809017 0.309017 265.12002 24 'point symmetry operation' ? ? 0.309017 -0.500000 -0.809017 265.12000 0.500001 0.809017 -0.309016 -0.00016 0.809016 -0.309018 0.500000 0.00017 25 'point symmetry operation' ? ? -0.809017 -0.309016 -0.500001 347.04654 0.309019 0.499999 -0.809017 132.55994 0.499999 -0.809018 -0.309016 214.48671 26 'point symmetry operation' ? ? -0.809017 0.309019 0.499999 132.55992 -0.309016 0.499999 -0.809018 214.48675 -0.500001 -0.809017 -0.309016 347.04652 27 'point symmetry operation' ? ? 0.309017 0.500001 0.809016 -81.92664 -0.500000 0.809017 -0.309018 132.56020 -0.809017 -0.309016 0.500000 214.48644 28 'point symmetry operation' ? ? -0.499999 0.809018 0.309017 50.63318 0.809018 0.309016 0.500000 -81.92650 0.309017 0.500000 -0.809017 132.56006 29 'point symmetry operation' ? ? -0.809017 -0.309018 -0.500000 347.04664 -0.309018 -0.499999 0.809017 132.55988 -0.500000 0.809017 0.309016 50.63356 30 'point symmetry operation' ? ? 0.809017 0.309016 0.500000 -81.92654 0.309017 0.500000 -0.809017 132.55997 -0.499999 0.809017 0.309017 50.63329 31 'point symmetry operation' ? ? 0.500001 0.809016 0.309018 -81.92667 0.809017 -0.309018 -0.500000 132.56002 -0.309016 0.500001 -0.809017 214.48637 32 'point symmetry operation' ? ? 0.500001 0.809017 -0.309016 -0.00021 0.809016 -0.309018 0.500001 0.00007 0.309018 -0.500000 -0.809017 265.11986 33 'point symmetry operation' ? ? 0.809017 0.309017 -0.499999 50.63325 0.309016 0.500000 0.809017 -81.92652 0.500000 -0.809017 0.309017 132.55999 34 'point symmetry operation' ? ? 0.500000 -0.809017 -0.309017 214.48647 0.809016 0.309017 0.500001 -81.92663 -0.309018 -0.500000 0.809017 132.56017 35 'point symmetry operation' ? ? -0.309016 -0.500000 -0.809017 347.04653 0.499999 -0.809017 0.309018 132.55993 -0.809018 -0.309016 0.499999 214.48673 36 'point symmetry operation' ? ? -0.309016 0.499999 -0.809018 214.48668 -0.500000 -0.809017 -0.309016 347.04655 -0.809017 0.309018 0.499999 132.55996 37 'point symmetry operation' ? ? 0.500000 0.809016 -0.309018 0.00013 -0.809017 0.309017 -0.500000 265.12000 -0.309017 0.500001 0.809017 -0.00013 38 'point symmetry operation' ? ? 0.809017 -0.309017 -0.500000 132.55992 0.309017 -0.500000 0.809017 50.63342 -0.500000 -0.809017 -0.309017 347.04659 39 'point symmetry operation' ? ? 0.809017 0.309017 -0.500000 50.63336 -0.309017 -0.500000 -0.809017 347.04657 -0.500000 0.809017 -0.309017 132.56000 40 'point symmetry operation' ? ? 0.000001 -0.000000 -1.000000 265.11985 1.000000 -0.000001 0.000001 0.00002 -0.000001 -1.000000 0.000000 265.12016 41 'point symmetry operation' ? ? 0.000001 1.000000 -0.000001 0.00002 -0.000000 -0.000001 -1.000000 265.12020 -1.000000 0.000001 0.000000 265.11982 42 'point symmetry operation' ? ? 0.000000 -1.000000 0.000001 265.11987 -0.000001 0.000001 1.000000 0.00006 -1.000000 -0.000000 -0.000001 265.12019 43 'point symmetry operation' ? ? 0.000000 -0.000001 -1.000000 265.12007 -1.000000 0.000001 -0.000000 265.11999 0.000001 1.000000 -0.000001 0.00006 44 'point symmetry operation' ? ? -0.309017 0.500000 -0.809017 214.48654 0.500001 0.809017 0.309017 -81.92660 0.809017 -0.309018 -0.500000 132.56014 45 'point symmetry operation' ? ? -0.309017 0.500001 0.809017 -0.00010 0.500000 0.809017 -0.309018 0.00014 -0.809017 0.309017 -0.500000 265.12004 46 'point symmetry operation' ? ? -0.809017 0.309017 0.500000 132.56004 0.309017 -0.500000 0.809017 50.63337 0.500000 0.809017 0.309017 -81.92657 47 'point symmetry operation' ? ? -0.000002 -1.000000 -0.000001 265.12040 0.000001 0.000001 -1.000000 265.11971 1.000000 -0.000002 0.000001 0.00011 48 'point symmetry operation' ? ? -0.000002 0.000001 1.000000 0.00011 -1.000000 0.000001 -0.000002 265.12018 -0.000001 -1.000000 0.000001 265.11992 49 'point symmetry operation' ? ? 0.309017 -0.500001 -0.809016 265.11996 -0.500001 -0.809016 0.309017 265.12001 -0.809016 0.309017 -0.500001 265.12002 50 'point symmetry operation' ? ? -0.500003 -0.809016 0.309017 265.12020 -0.809016 0.309019 -0.500001 265.11968 0.309017 -0.500001 -0.809017 265.12012 51 'point symmetry operation' ? ? -0.309018 -0.500000 -0.809017 347.04662 -0.499999 0.809018 -0.309017 132.55982 0.809017 0.309016 -0.500000 50.63350 52 'point symmetry operation' ? ? -0.309018 -0.499999 0.809017 132.55989 -0.500000 0.809018 0.309016 50.63344 -0.809017 -0.309017 -0.500000 347.04660 53 'point symmetry operation' ? ? -0.499999 0.809017 -0.309017 132.55988 0.809017 0.309016 -0.500000 50.63351 -0.309017 -0.500000 -0.809017 347.04662 54 'point symmetry operation' ? ? -0.500000 -0.809017 -0.309016 347.04653 -0.809017 0.309018 0.499999 132.56000 -0.309016 0.499999 -0.809018 214.48672 55 'point symmetry operation' ? ? -1.000000 0.000001 -0.000000 265.11991 0.000001 1.000000 -0.000001 0.00007 -0.000000 -0.000001 -1.000000 265.12015 56 'point symmetry operation' ? ? 0.309015 -0.500000 0.809018 50.63362 -0.500000 -0.809017 -0.309018 347.04666 0.809018 -0.309018 -0.499999 132.55983 57 'point symmetry operation' ? ? -0.809018 -0.309016 0.499999 214.48674 -0.309016 -0.500000 -0.809017 347.04653 0.499999 -0.809017 0.309018 132.56003 58 'point symmetry operation' ? ? 1.000000 -0.000001 0.000001 0.00009 -0.000001 -1.000000 -0.000000 265.12019 0.000001 -0.000000 -1.000000 265.11990 59 'point symmetry operation' ? ? -0.809016 0.309017 -0.500001 265.12002 0.309017 -0.500001 -0.809016 265.12004 -0.500001 -0.809016 0.309018 265.11994 60 'point symmetry operation' ? ? 0.309018 0.499999 -0.809017 132.55998 0.499999 -0.809018 -0.309016 214.48668 -0.809017 -0.309016 -0.500000 347.04655 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-11-29 2 'Structure model' 1 1 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8PVJ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 1hqk _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1hqk _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8PVJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 8565 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'lumazine synthase' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8PVJ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'JEOL 1400/HR + YPS FEG' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 100 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8PVJ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8PVJ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8PVJ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 87 ? ? -68.37 1.57 2 1 ALA A 128 ? ? -114.14 53.08 3 1 THR A 130 ? ? -124.51 -128.35 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TRP 155 ? CG ? A TRP 155 CG 2 1 Y 1 A TRP 155 ? CD1 ? A TRP 155 CD1 3 1 Y 1 A TRP 155 ? CD2 ? A TRP 155 CD2 4 1 Y 1 A TRP 155 ? NE1 ? A TRP 155 NE1 5 1 Y 1 A TRP 155 ? CE2 ? A TRP 155 CE2 6 1 Y 1 A TRP 155 ? CE3 ? A TRP 155 CE3 7 1 Y 1 A TRP 155 ? CZ2 ? A TRP 155 CZ2 8 1 Y 1 A TRP 155 ? CZ3 ? A TRP 155 CZ3 9 1 Y 1 A TRP 155 ? CH2 ? A TRP 155 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 156 ? A SER 156 2 1 Y 1 A HIS 157 ? A HIS 157 3 1 Y 1 A PRO 158 ? A PRO 158 4 1 Y 1 A GLN 159 ? A GLN 159 5 1 Y 1 A PHE 160 ? A PHE 160 6 1 Y 1 A GLU 161 ? A GLU 161 7 1 Y 1 A LYS 162 ? A LYS 162 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 63363 _em_entity_assembly_naturalsource.organism 'Aquifex aeolicus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 80 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'DECTRIS SINGLA (1k x 1k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? Servalcat 0.4.27 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' 'MC UP 120117' 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' 'MC U105184322' 2 'Wellcome Trust' 'United Kingdom' 220526/B/20/Z 3 'Engineering and Physical Sciences Research Council' 'United Kingdom' R122522 4 'Innovate UK' 'United Kingdom' 103806 5 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/T003677/1 6 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1hqk # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' #