HEADER LIGASE 20-JUL-23 8PWC TITLE CRYSTAL STRUCTURE OF MDM2 WITH BRIGIMADLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,RING-TYPE E3 COMPND 5 UBIQUITIN TRANSFERASE MDM2,P53-BINDING PROTEIN MDM2; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BADER,B.WOLKERSTORFER REVDAT 2 11-DEC-24 8PWC 1 JRNL REVDAT 1 02-OCT-24 8PWC 0 JRNL AUTH A.GOLLNER,D.RUDOLPH,U.WEYER-CZERNILOFSKY,R.BAUMGARTINGER, JRNL AUTH 2 P.JUNG,H.WEINSTABL,J.RAMHARTER,R.GREMPLER,J.QUANT, JRNL AUTH 3 J.RINNENTHAL,A.PEREZ PITARCH,B.GOLUBOVIC,D.GERLACH,G.BADER, JRNL AUTH 4 K.WETZEL,S.OTTO,C.MANDL,G.BOEHMELT,D.B.MCCONNELL,N.KRAUT, JRNL AUTH 5 P.SINI JRNL TITL DISCOVERY AND CHARACTERIZATION OF BRIGIMADLIN, A NOVEL AND JRNL TITL 2 HIGHLY POTENT MDM2-P53 ANTAGONIST SUITABLE FOR INTERMITTENT JRNL TITL 3 DOSE SCHEDULES. JRNL REF MOL.CANCER THER. V. 23 1689 2024 JRNL REFN ESSN 1538-8514 JRNL PMID 39259562 JRNL DOI 10.1158/1535-7163.MCT-23-0783 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (8-JUN-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.7 REMARK 3 NUMBER OF REFLECTIONS : 45565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2233 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 869 REMARK 3 BIN R VALUE (WORKING SET) : 0.2772 REMARK 3 BIN FREE R VALUE : 0.2749 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.71 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41610 REMARK 3 B22 (A**2) : 0.41610 REMARK 3 B33 (A**2) : -0.83210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.085 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.084 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.100 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.085 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4910 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8926 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1452 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 777 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4901 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 306 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4772 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.81 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 30.2164 -29.2232 6.6641 REMARK 3 T TENSOR REMARK 3 T11: -0.0270 T22: 0.0145 REMARK 3 T33: -0.0202 T12: -0.0242 REMARK 3 T13: 0.0181 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.7388 L22: 0.8942 REMARK 3 L33: 1.7206 L12: 0.2194 REMARK 3 L13: 0.2448 L23: 0.4958 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0208 S13: -0.0487 REMARK 3 S21: 0.0587 S22: -0.0845 S23: 0.0556 REMARK 3 S31: 0.0930 S32: -0.1709 S33: 0.1004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.5393 -42.5188 21.8253 REMARK 3 T TENSOR REMARK 3 T11: -0.0211 T22: -0.0041 REMARK 3 T33: -0.0181 T12: -0.0351 REMARK 3 T13: -0.0151 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.3225 L22: 0.6619 REMARK 3 L33: 2.4226 L12: 0.3091 REMARK 3 L13: 0.7479 L23: -0.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.0844 S13: -0.0145 REMARK 3 S21: 0.0682 S22: -0.1289 S23: -0.1226 REMARK 3 S31: -0.1244 S32: 0.1600 S33: 0.1496 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 38.3593 -59.7226 30.4624 REMARK 3 T TENSOR REMARK 3 T11: -0.2172 T22: -0.2123 REMARK 3 T33: 0.3642 T12: 0.0092 REMARK 3 T13: 0.1873 T23: 0.2273 REMARK 3 L TENSOR REMARK 3 L11: 1.7421 L22: 5.2826 REMARK 3 L33: 3.1772 L12: -0.0859 REMARK 3 L13: 0.3810 L23: 0.4826 REMARK 3 S TENSOR REMARK 3 S11: 0.2780 S12: 0.4277 S13: 0.5601 REMARK 3 S21: -0.0890 S22: 0.2221 S23: 0.1344 REMARK 3 S31: -0.3712 S32: 0.0636 S33: -0.5001 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { X|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.5456 -45.3199 22.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: -0.0224 REMARK 3 T33: 0.0537 T12: -0.0475 REMARK 3 T13: -0.0001 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.4344 L22: 0.0489 REMARK 3 L33: 0.0000 L12: 0.1678 REMARK 3 L13: -0.2990 L23: -0.3073 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: 0.0334 S13: -0.2043 REMARK 3 S21: -0.0276 S22: -0.0358 S23: -0.1140 REMARK 3 S31: -0.0007 S32: -0.0852 S33: 0.0921 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE FULLY REFINED REMARK 3 WITH FULL OCCUPANCY AT NUCLEAR POSITION. REMARK 4 REMARK 4 8PWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC, XDS (VERSION FEB 5, REMARK 200 AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC (VERSION 1.1.7), REMARK 200 AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45565 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.461 REMARK 200 RESOLUTION RANGE LOW (A) : 41.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.1M SODIUM SULPHATE, 10 REMARK 280 MM MANGANES CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.03733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.01867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 110 REMARK 465 ASN A 111 REMARK 465 GLN A 112 REMARK 465 GLN A 113 REMARK 465 GLU A 114 REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 ASP A 117 REMARK 465 SER A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 SER A 121 REMARK 465 VAL A 122 REMARK 465 SER A 123 REMARK 465 GLU A 124 REMARK 465 ASN A 125 REMARK 465 ASN B 111 REMARK 465 GLN B 112 REMARK 465 GLN B 113 REMARK 465 GLU B 114 REMARK 465 SER B 115 REMARK 465 SER B 116 REMARK 465 ASP B 117 REMARK 465 SER B 118 REMARK 465 GLY B 119 REMARK 465 THR B 120 REMARK 465 SER B 121 REMARK 465 VAL B 122 REMARK 465 SER B 123 REMARK 465 GLU B 124 REMARK 465 ASN B 125 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 GLU C 69 REMARK 465 LYS C 70 REMARK 465 GLN C 71 REMARK 465 VAL C 108 REMARK 465 VAL C 109 REMARK 465 VAL C 110 REMARK 465 ASN C 111 REMARK 465 GLN C 112 REMARK 465 GLN C 113 REMARK 465 GLU C 114 REMARK 465 SER C 115 REMARK 465 SER C 116 REMARK 465 ASP C 117 REMARK 465 SER C 118 REMARK 465 GLY C 119 REMARK 465 THR C 120 REMARK 465 SER C 121 REMARK 465 VAL C 122 REMARK 465 SER C 123 REMARK 465 GLU C 124 REMARK 465 ASN C 125 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 48 N CA C O CB CG CD1 REMARK 480 TYR A 48 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG22 ILE A 19 O HOH A 301 1.36 REMARK 500 HG23 ILE B 74 O HOH B 301 1.48 REMARK 500 O HOH B 318 O HOH B 347 1.53 REMARK 500 O HOH A 327 O HOH A 328 1.73 REMARK 500 O HOH C 326 O HOH C 340 1.93 REMARK 500 CG2 ILE B 74 O HOH B 301 2.02 REMARK 500 O PRO A 20 O HOH A 301 2.10 REMARK 500 O VAL B 75 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 44 60.92 -115.84 REMARK 500 GLN B 44 57.11 -113.09 REMARK 500 GLU B 69 -37.54 121.49 REMARK 500 GLN C 44 60.37 -113.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PWC A 17 125 UNP Q00987 MDM2_HUMAN 17 125 DBREF 8PWC B 17 125 UNP Q00987 MDM2_HUMAN 17 125 DBREF 8PWC C 17 125 UNP Q00987 MDM2_HUMAN 17 125 SEQADV 8PWC GLY A 16 UNP Q00987 EXPRESSION TAG SEQADV 8PWC GLY B 16 UNP Q00987 EXPRESSION TAG SEQADV 8PWC GLY C 16 UNP Q00987 EXPRESSION TAG SEQRES 1 A 110 GLY SER GLN ILE PRO ALA SER GLU GLN GLU THR LEU VAL SEQRES 2 A 110 ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SER VAL SEQRES 3 A 110 GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU VAL LEU SEQRES 4 A 110 PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG LEU TYR SEQRES 5 A 110 ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER ASN ASP SEQRES 6 A 110 LEU LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SER VAL SEQRES 7 A 110 LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR ARG ASN SEQRES 8 A 110 LEU VAL VAL VAL ASN GLN GLN GLU SER SER ASP SER GLY SEQRES 9 A 110 THR SER VAL SER GLU ASN SEQRES 1 B 110 GLY SER GLN ILE PRO ALA SER GLU GLN GLU THR LEU VAL SEQRES 2 B 110 ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SER VAL SEQRES 3 B 110 GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU VAL LEU SEQRES 4 B 110 PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG LEU TYR SEQRES 5 B 110 ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER ASN ASP SEQRES 6 B 110 LEU LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SER VAL SEQRES 7 B 110 LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR ARG ASN SEQRES 8 B 110 LEU VAL VAL VAL ASN GLN GLN GLU SER SER ASP SER GLY SEQRES 9 B 110 THR SER VAL SER GLU ASN SEQRES 1 C 110 GLY SER GLN ILE PRO ALA SER GLU GLN GLU THR LEU VAL SEQRES 2 C 110 ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SER VAL SEQRES 3 C 110 GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU VAL LEU SEQRES 4 C 110 PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG LEU TYR SEQRES 5 C 110 ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER ASN ASP SEQRES 6 C 110 LEU LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SER VAL SEQRES 7 C 110 LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR ARG ASN SEQRES 8 C 110 LEU VAL VAL VAL ASN GLN GLN GLU SER SER ASP SER GLY SEQRES 9 C 110 THR SER VAL SER GLU ASN HET G7I A 201 65 HET G7I B 201 65 HET G7I C 201 65 HETNAM G7I BRIGIMADLIN FORMUL 4 G7I 3(C31 H25 CL2 F N4 O3) FORMUL 7 HOH *215(H2 O) HELIX 1 AA1 PRO A 20 GLU A 25 1 6 HELIX 2 AA2 LYS A 31 VAL A 41 1 11 HELIX 3 AA3 MET A 50 LYS A 64 1 15 HELIX 4 AA4 ASP A 80 GLY A 87 1 8 HELIX 5 AA5 GLU A 95 ARG A 105 1 11 HELIX 6 AA6 PRO B 20 GLU B 25 1 6 HELIX 7 AA7 LYS B 31 VAL B 41 1 11 HELIX 8 AA8 MET B 50 LYS B 64 1 15 HELIX 9 AA9 ASP B 80 GLY B 87 1 8 HELIX 10 AB1 GLU B 95 ARG B 105 1 11 HELIX 11 AB2 PRO C 20 GLU C 25 1 6 HELIX 12 AB3 LYS C 31 VAL C 41 1 11 HELIX 13 AB4 MET C 50 LYS C 64 1 15 HELIX 14 AB5 ASP C 80 GLY C 87 1 8 HELIX 15 AB6 GLU C 95 ARG C 105 1 11 SHEET 1 AA1 2 LEU A 27 VAL A 28 0 SHEET 2 AA1 2 TYR A 48 THR A 49 -1 O TYR A 48 N VAL A 28 SHEET 1 AA2 2 ILE A 74 TYR A 76 0 SHEET 2 AA2 2 SER A 90 SER A 92 -1 O PHE A 91 N VAL A 75 SHEET 1 AA3 2 LEU B 27 VAL B 28 0 SHEET 2 AA3 2 TYR B 48 THR B 49 -1 O TYR B 48 N VAL B 28 SHEET 1 AA4 2 ILE B 74 TYR B 76 0 SHEET 2 AA4 2 SER B 90 SER B 92 -1 O PHE B 91 N VAL B 75 SHEET 1 AA5 2 LEU C 27 VAL C 28 0 SHEET 2 AA5 2 TYR C 48 THR C 49 -1 O TYR C 48 N VAL C 28 SHEET 1 AA6 2 ILE C 74 TYR C 76 0 SHEET 2 AA6 2 SER C 90 SER C 92 -1 O PHE C 91 N VAL C 75 CRYST1 83.207 83.207 42.056 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012018 0.006939 0.000000 0.00000 SCALE2 0.000000 0.013877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023778 0.00000 CONECT 4651 4652 4671 4690 CONECT 4652 4651 4655 4692 CONECT 4653 4654 4671 4693 CONECT 4654 4653 4655 4664 CONECT 4655 4652 4654 4686 CONECT 4656 4664 4686 4687 CONECT 4657 4665 4667 4668 CONECT 4658 4665 4666 4691 CONECT 4659 4666 4667 4694 CONECT 4660 4669 4683 4695 4696 CONECT 4661 4668 4670 4684 4697 CONECT 4662 4663 4670 4698 4699 CONECT 4663 4662 4673 4684 CONECT 4664 4654 4656 4668 4683 CONECT 4665 4657 4658 4682 CONECT 4666 4658 4659 4700 CONECT 4667 4657 4659 4701 CONECT 4668 4657 4661 4664 4702 CONECT 4669 4660 4679 4680 4703 CONECT 4670 4661 4662 4683 4704 CONECT 4671 4651 4653 4705 CONECT 4672 4673 4677 4685 CONECT 4673 4663 4672 4674 CONECT 4674 4673 4675 4706 CONECT 4675 4674 4676 4707 CONECT 4676 4675 4677 4678 CONECT 4677 4672 4676 4681 CONECT 4678 4676 4688 4689 CONECT 4679 4669 4680 4708 4709 CONECT 4680 4669 4679 4710 4711 CONECT 4681 4677 4712 4713 4714 CONECT 4682 4665 CONECT 4683 4660 4664 4670 CONECT 4684 4661 4663 4685 CONECT 4685 4672 4684 CONECT 4686 4655 4656 4715 CONECT 4687 4656 CONECT 4688 4678 CONECT 4689 4678 CONECT 4690 4651 CONECT 4691 4658 CONECT 4692 4652 CONECT 4693 4653 CONECT 4694 4659 CONECT 4695 4660 CONECT 4696 4660 CONECT 4697 4661 CONECT 4698 4662 CONECT 4699 4662 CONECT 4700 4666 CONECT 4701 4667 CONECT 4702 4668 CONECT 4703 4669 CONECT 4704 4670 CONECT 4705 4671 CONECT 4706 4674 CONECT 4707 4675 CONECT 4708 4679 CONECT 4709 4679 CONECT 4710 4680 CONECT 4711 4680 CONECT 4712 4681 CONECT 4713 4681 CONECT 4714 4681 CONECT 4715 4686 CONECT 4716 4717 4736 4755 CONECT 4717 4716 4720 4757 CONECT 4718 4719 4736 4758 CONECT 4719 4718 4720 4729 CONECT 4720 4717 4719 4751 CONECT 4721 4729 4751 4752 CONECT 4722 4730 4732 4733 CONECT 4723 4730 4731 4756 CONECT 4724 4731 4732 4759 CONECT 4725 4734 4748 4760 4761 CONECT 4726 4733 4735 4749 4762 CONECT 4727 4728 4735 4763 4764 CONECT 4728 4727 4738 4749 CONECT 4729 4719 4721 4733 4748 CONECT 4730 4722 4723 4747 CONECT 4731 4723 4724 4765 CONECT 4732 4722 4724 4766 CONECT 4733 4722 4726 4729 4767 CONECT 4734 4725 4744 4745 4768 CONECT 4735 4726 4727 4748 4769 CONECT 4736 4716 4718 4770 CONECT 4737 4738 4742 4750 CONECT 4738 4728 4737 4739 CONECT 4739 4738 4740 4771 CONECT 4740 4739 4741 4772 CONECT 4741 4740 4742 4743 CONECT 4742 4737 4741 4746 CONECT 4743 4741 4753 4754 CONECT 4744 4734 4745 4773 4774 CONECT 4745 4734 4744 4775 4776 CONECT 4746 4742 4777 4778 4779 CONECT 4747 4730 CONECT 4748 4725 4729 4735 CONECT 4749 4726 4728 4750 CONECT 4750 4737 4749 CONECT 4751 4720 4721 4780 CONECT 4752 4721 CONECT 4753 4743 CONECT 4754 4743 CONECT 4755 4716 CONECT 4756 4723 CONECT 4757 4717 CONECT 4758 4718 CONECT 4759 4724 CONECT 4760 4725 CONECT 4761 4725 CONECT 4762 4726 CONECT 4763 4727 CONECT 4764 4727 CONECT 4765 4731 CONECT 4766 4732 CONECT 4767 4733 CONECT 4768 4734 CONECT 4769 4735 CONECT 4770 4736 CONECT 4771 4739 CONECT 4772 4740 CONECT 4773 4744 CONECT 4774 4744 CONECT 4775 4745 CONECT 4776 4745 CONECT 4777 4746 CONECT 4778 4746 CONECT 4779 4746 CONECT 4780 4751 CONECT 4781 4782 4801 4820 CONECT 4782 4781 4785 4822 CONECT 4783 4784 4801 4823 CONECT 4784 4783 4785 4794 CONECT 4785 4782 4784 4816 CONECT 4786 4794 4816 4817 CONECT 4787 4795 4797 4798 CONECT 4788 4795 4796 4821 CONECT 4789 4796 4797 4824 CONECT 4790 4799 4813 4825 4826 CONECT 4791 4798 4800 4814 4827 CONECT 4792 4793 4800 4828 4829 CONECT 4793 4792 4803 4814 CONECT 4794 4784 4786 4798 4813 CONECT 4795 4787 4788 4812 CONECT 4796 4788 4789 4830 CONECT 4797 4787 4789 4831 CONECT 4798 4787 4791 4794 4832 CONECT 4799 4790 4809 4810 4833 CONECT 4800 4791 4792 4813 4834 CONECT 4801 4781 4783 4835 CONECT 4802 4803 4807 4815 CONECT 4803 4793 4802 4804 CONECT 4804 4803 4805 4836 CONECT 4805 4804 4806 4837 CONECT 4806 4805 4807 4808 CONECT 4807 4802 4806 4811 CONECT 4808 4806 4818 4819 CONECT 4809 4799 4810 4838 4839 CONECT 4810 4799 4809 4840 4841 CONECT 4811 4807 4842 4843 4844 CONECT 4812 4795 CONECT 4813 4790 4794 4800 CONECT 4814 4791 4793 4815 CONECT 4815 4802 4814 CONECT 4816 4785 4786 4845 CONECT 4817 4786 CONECT 4818 4808 CONECT 4819 4808 CONECT 4820 4781 CONECT 4821 4788 CONECT 4822 4782 CONECT 4823 4783 CONECT 4824 4789 CONECT 4825 4790 CONECT 4826 4790 CONECT 4827 4791 CONECT 4828 4792 CONECT 4829 4792 CONECT 4830 4796 CONECT 4831 4797 CONECT 4832 4798 CONECT 4833 4799 CONECT 4834 4800 CONECT 4835 4801 CONECT 4836 4804 CONECT 4837 4805 CONECT 4838 4809 CONECT 4839 4809 CONECT 4840 4810 CONECT 4841 4810 CONECT 4842 4811 CONECT 4843 4811 CONECT 4844 4811 CONECT 4845 4816 MASTER 397 0 3 15 12 0 0 6 2598 3 195 27 END