HEADER TRANSCRIPTION 20-JUL-23 8PWM TITLE CRYSTAL STRUCTURE OF VDR IN COMPLEX WITH DES-C-RING AND AROMATIC-D- TITLE 2 RING ANALOG 3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, VDR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 1 21-AUG-24 8PWM 0 JRNL AUTH N.ROCHEL JRNL TITL NOVEL DES-C-RING AND AROMATIC-D-RING ANALOGS ACTING AS JRNL TITL 2 POTENT AGONISTS OF THE VITAMIN D RECEPTOR (VDR) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8100 - 5.1000 1.00 1476 163 0.1775 0.2159 REMARK 3 2 5.1000 - 4.0600 1.00 1347 151 0.1477 0.1899 REMARK 3 3 4.0500 - 3.5400 1.00 1323 147 0.1623 0.2377 REMARK 3 4 3.5400 - 3.2200 0.99 1311 146 0.1911 0.2678 REMARK 3 5 3.2200 - 2.9900 1.00 1272 142 0.2260 0.3385 REMARK 3 6 2.9900 - 2.8100 1.00 1309 146 0.2347 0.3401 REMARK 3 7 2.8100 - 2.6700 0.99 1273 142 0.2499 0.3237 REMARK 3 8 2.6700 - 2.5600 1.00 1259 140 0.2722 0.3065 REMARK 3 9 2.5600 - 2.4600 0.99 1259 140 0.3402 0.3924 REMARK 3 10 2.4600 - 2.3700 0.99 1255 140 0.4278 0.4410 REMARK 3 11 2.3700 - 2.3000 0.99 1275 141 0.4887 0.5504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : 1.063 NULL REMARK 3 CHIRALITY : 0.051 318 REMARK 3 PLANARITY : 0.007 371 REMARK 3 DIHEDRAL : 17.133 817 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3679 33.6724 0.1099 REMARK 3 T TENSOR REMARK 3 T11: 0.7529 T22: 0.8734 REMARK 3 T33: 0.7343 T12: -0.1375 REMARK 3 T13: 0.0402 T23: -0.1033 REMARK 3 L TENSOR REMARK 3 L11: 5.0095 L22: 5.3219 REMARK 3 L33: 4.9187 L12: -1.6489 REMARK 3 L13: -2.0815 L23: 5.1038 REMARK 3 S TENSOR REMARK 3 S11: 0.1602 S12: -0.0766 S13: 0.3180 REMARK 3 S21: -0.5967 S22: -1.4066 S23: 1.1268 REMARK 3 S31: -0.9029 S32: -1.7560 S33: 1.1134 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4204 11.0115 -16.8641 REMARK 3 T TENSOR REMARK 3 T11: 0.9088 T22: 0.9018 REMARK 3 T33: 0.6764 T12: -0.0545 REMARK 3 T13: 0.1041 T23: -0.1472 REMARK 3 L TENSOR REMARK 3 L11: 6.8563 L22: 4.1162 REMARK 3 L33: 6.3491 L12: 1.3676 REMARK 3 L13: 3.7937 L23: -3.2849 REMARK 3 S TENSOR REMARK 3 S11: 0.2136 S12: 0.1981 S13: -0.5340 REMARK 3 S21: 0.2051 S22: -0.2945 S23: 0.1496 REMARK 3 S31: 0.3317 S32: 0.2538 S33: 0.0725 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6278 30.4869 -5.8614 REMARK 3 T TENSOR REMARK 3 T11: 0.6768 T22: 0.6523 REMARK 3 T33: 0.4542 T12: -0.0938 REMARK 3 T13: 0.0022 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 5.8569 L22: 2.9000 REMARK 3 L33: 7.0365 L12: -1.5448 REMARK 3 L13: -3.4736 L23: 1.3055 REMARK 3 S TENSOR REMARK 3 S11: 0.4125 S12: -0.5273 S13: 0.4826 REMARK 3 S21: 0.0910 S22: -0.4435 S23: 0.0167 REMARK 3 S31: -0.2654 S32: -0.1124 S33: 0.0249 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 307 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5020 10.8470 -4.9561 REMARK 3 T TENSOR REMARK 3 T11: 1.3043 T22: 0.8984 REMARK 3 T33: 0.9059 T12: -0.2772 REMARK 3 T13: 0.2063 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 4.6171 L22: 5.4410 REMARK 3 L33: 7.9888 L12: -2.1143 REMARK 3 L13: -1.1339 L23: 1.2641 REMARK 3 S TENSOR REMARK 3 S11: -0.6227 S12: -0.2844 S13: -0.8305 REMARK 3 S21: -0.0973 S22: -0.1975 S23: 0.3757 REMARK 3 S31: 1.9869 S32: -0.9725 S33: 0.7460 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2226 25.1781 5.0274 REMARK 3 T TENSOR REMARK 3 T11: 0.9438 T22: 0.9270 REMARK 3 T33: 0.5126 T12: -0.0747 REMARK 3 T13: -0.0105 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 4.1808 L22: 2.8886 REMARK 3 L33: 5.0785 L12: 0.2639 REMARK 3 L13: -3.3061 L23: 0.6378 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.6138 S13: -0.0842 REMARK 3 S21: 0.6646 S22: -0.1000 S23: 0.2996 REMARK 3 S31: 0.4348 S32: 0.1476 S33: 0.2337 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9454 27.0467 1.4753 REMARK 3 T TENSOR REMARK 3 T11: 0.7380 T22: 0.5897 REMARK 3 T33: 0.5444 T12: -0.1520 REMARK 3 T13: 0.0185 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 4.9159 L22: 1.4888 REMARK 3 L33: 5.7373 L12: -1.2840 REMARK 3 L13: -1.2004 L23: 1.3451 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.9679 S13: 0.1891 REMARK 3 S21: 0.5182 S22: 0.2156 S23: 0.0938 REMARK 3 S31: 0.0948 S32: 0.6256 S33: -0.2289 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9072 37.6733 -15.6452 REMARK 3 T TENSOR REMARK 3 T11: 1.1252 T22: 1.0540 REMARK 3 T33: 0.6596 T12: -0.1382 REMARK 3 T13: 0.0981 T23: -0.1265 REMARK 3 L TENSOR REMARK 3 L11: 7.3063 L22: 8.1713 REMARK 3 L33: 2.0015 L12: 6.3467 REMARK 3 L13: 0.3905 L23: -0.1045 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.0395 S13: 0.2018 REMARK 3 S21: -1.2903 S22: 0.3267 S23: -0.4028 REMARK 3 S31: -1.3046 S32: 1.9061 S33: -0.5661 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAACETATE 2.5M, BISTRIS 0.1M PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.14200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.07100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.10650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.03550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.17750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.14200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.07100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.03550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.10650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.17750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -32.92450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.02691 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.03550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 HIS A 154 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 SER A 453 REMARK 465 ASP B 696 REMARK 465 SER B 697 REMARK 465 SER B 698 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 359 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 263 O HOH A 601 2.09 REMARK 500 OG SER A 424 O HOH A 602 2.12 REMARK 500 O HOH A 603 O HOH A 625 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 179 29.43 49.36 REMARK 500 LEU A 252 78.45 57.75 REMARK 500 PRO A 277 109.96 -46.97 REMARK 500 LYS A 330 15.53 -69.33 REMARK 500 LEU A 367 32.96 -90.16 REMARK 500 HIS B 687 57.39 -118.95 REMARK 500 LEU B 694 21.06 -74.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PWM A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 8PWM B 686 698 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 8PWM GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWM SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWM HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 8PWM MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET ACT A 501 4 HET HXI A 502 34 HETNAM ACT ACETATE ION HETNAM HXI (1R,3S,5Z)-4-METHYLIDENE-5-[(E)-3-[3-[7,7,7- HETNAM 2 HXI TRIS(FLUORANYL)-6-OXIDANYL-6-(TRIFLUOROMETHYL)HEPT-3- HETNAM 3 HXI YNYL]PHENYL]BUT-2-ENYLIDENE]CYCLOHEXANE-1,3-DIOL FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HXI C25 H26 F6 O3 FORMUL 5 HOH *47(H2 O) HELIX 1 AA1 SER A 157 THR A 174 1 18 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 LYS A 274 1 21 HELIX 4 AA4 THR A 283 SER A 303 1 21 HELIX 5 AA5 GLY A 318 ASP A 320 5 3 HELIX 6 AA6 CYS A 324 LYS A 330 1 7 HELIX 7 AA7 THR A 334 LYS A 352 1 19 HELIX 8 AA8 HIS A 354 LEU A 367 1 14 HELIX 9 AA9 ASP A 376 HIS A 399 1 24 HELIX 10 AB1 LEU A 404 PHE A 432 1 29 HELIX 11 AB2 GLN A 433 MET A 438 1 6 HELIX 12 AB3 THR A 441 PHE A 448 1 8 HELIX 13 AB4 HIS B 687 LEU B 694 1 8 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 65.849 65.849 264.213 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015186 0.008768 0.000000 0.00000 SCALE2 0.000000 0.017536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003785 0.00000