HEADER UNKNOWN FUNCTION 22-JUL-23 8PX4 TITLE STRUCTURE OF THE PAS DOMAIN CODE BY THE LIC_11128 GENE FROM LEPTOSPIRA TITLE 2 INTERROGANS SEROVAR COPENHAGENI FIOCRUZ, SOLVED AT WAVELENGTH 3.09 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE CYCLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI; SOURCE 3 ORGANISM_TAXID: 44275; SOURCE 4 GENE: FVE87_03295; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GGDEF FAMILY PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.ORR,C.R.GUZZO,R.J.OWENS,A.WAGNER REVDAT 1 25-OCT-23 8PX4 0 JRNL AUTH K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.M.ORR,M.LATIMER-SMITH, JRNL AUTH 2 G.WINTER,V.GRAMA,F.QU,K.BOUNTRA,H.S.KWONG,M.ROMANO,R.I.REIS, JRNL AUTH 3 L.VOGELEY,L.VECCHIA,C.D.OWEN,S.WITTMANN,M.RENNER,M.SENDA, JRNL AUTH 4 N.MATSUGAKI,Y.KAWANO,T.A.BOWDEN,I.MORAES,J.M.GRIMES, JRNL AUTH 5 E.J.MANCINI,M.A.WALSH,C.R.GUZZO,R.J.OWENS,E.Y.JONES, JRNL AUTH 6 D.G.BROWN,D.I.STUART,K.BEIS,A.WAGNER JRNL TITL EXPERIMENTAL PHASING OPPORTUNITIES FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY AT VERY LONG WAVELENGTHS. JRNL REF COMMUN CHEM V. 6 219 2023 JRNL REFN ESSN 2399-3669 JRNL PMID 37828292 JRNL DOI 10.1038/S42004-023-01014-0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 10829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.77000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.951 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.063 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2732 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2552 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3701 ; 0.656 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5860 ; 0.243 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ; 6.063 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;16.473 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.036 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3270 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 3.898 ; 5.505 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1297 ; 3.897 ; 5.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1616 ; 5.543 ; 9.900 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1617 ; 5.543 ; 9.901 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1435 ; 5.482 ; 6.427 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1436 ; 5.480 ; 6.427 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2086 ; 8.673 ;11.438 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2788 ;10.623 ;55.920 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2789 ;10.621 ;55.920 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3097 26.9397 41.5317 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.0710 REMARK 3 T33: 0.0245 T12: 0.0552 REMARK 3 T13: 0.0259 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.7879 L22: 1.0123 REMARK 3 L33: 2.5297 L12: 0.1971 REMARK 3 L13: 0.2418 L23: -0.8009 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.0276 S13: -0.0359 REMARK 3 S21: 0.1711 S22: 0.1843 S23: 0.0796 REMARK 3 S31: -0.1727 S32: -0.0470 S33: -0.2178 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1492 -5.0208 32.6695 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0442 REMARK 3 T33: 0.2157 T12: -0.0449 REMARK 3 T13: -0.0233 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 3.1619 L22: 2.4882 REMARK 3 L33: 0.2260 L12: -1.1293 REMARK 3 L13: 0.0953 L23: -0.7067 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.0753 S13: -0.4736 REMARK 3 S21: -0.0921 S22: 0.0430 S23: 0.3555 REMARK 3 S31: 0.0122 S32: 0.0116 S33: -0.0502 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 116 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7895 21.5713 19.2605 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.0731 REMARK 3 T33: 0.0755 T12: -0.0239 REMARK 3 T13: -0.0135 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 0.0460 L22: 3.3460 REMARK 3 L33: 3.0783 L12: 0.0283 REMARK 3 L13: 0.3726 L23: 0.4446 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.0074 S13: -0.0286 REMARK 3 S21: -0.2492 S22: 0.2771 S23: 0.1843 REMARK 3 S31: -0.1302 S32: 0.0593 S33: -0.2500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 3.09 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 72.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 200 DATA REDUNDANCY : 49.20 REMARK 200 R MERGE (I) : 0.08298 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.43300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5,5, 17% W/V PEG REMARK 280 10,000, AND 0.1 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.45500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.45500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 PHE B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 TYR B 9 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 ASN C 4 REMARK 465 PHE C 5 REMARK 465 GLU C 6 REMARK 465 LYS C 7 REMARK 465 GLU C 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 38 O LEU B 42 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 20 OD2 ASP B 20 2555 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 52 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8PX4 A 3 116 UNP A0A6G9EEG0_LEPIT DBREF2 8PX4 A A0A6G9EEG0 2 115 DBREF1 8PX4 B 3 116 UNP A0A6G9EEG0_LEPIT DBREF2 8PX4 B A0A6G9EEG0 2 115 DBREF1 8PX4 C 3 116 UNP A0A6G9EEG0_LEPIT DBREF2 8PX4 C A0A6G9EEG0 2 115 SEQADV 8PX4 GLY A 1 UNP A0A6G9EEG EXPRESSION TAG SEQADV 8PX4 PRO A 2 UNP A0A6G9EEG EXPRESSION TAG SEQADV 8PX4 GLY B 1 UNP A0A6G9EEG EXPRESSION TAG SEQADV 8PX4 PRO B 2 UNP A0A6G9EEG EXPRESSION TAG SEQADV 8PX4 GLY C 1 UNP A0A6G9EEG EXPRESSION TAG SEQADV 8PX4 PRO C 2 UNP A0A6G9EEG EXPRESSION TAG SEQRES 1 A 116 GLY PRO THR ASN PHE GLU LYS GLU TYR ASP LEU GLU LYS SEQRES 2 A 116 LEU VAL ASN ASN SER LEU ASP LEU LEU SER ILE GLN ARG SEQRES 3 A 116 LEU ASP GLY THR VAL LEU GLN VAL ASN PRO ALA PHE GLU SEQRES 4 A 116 ARG LEU LEU GLY TRP ARG GLU GLU GLU LEU ILE GLY ARG SEQRES 5 A 116 ASN PRO PHE HIS LEU LEU HIS PRO GLU ASP ARG GLU SER SEQRES 6 A 116 THR PHE GLN GLU PHE LYS LYS LEU ASN GLN GLY LEU PRO SEQRES 7 A 116 VAL PHE ALA PHE GLN ASN ARG PHE LEU CYS SER ASP GLY SEQRES 8 A 116 THR TYR LYS TYR PHE SER TRP THR ALA SER PRO ASP LEU SEQRES 9 A 116 SER ALA GLY LEU ILE TYR VAL THR GLY ARG ASP ILE SEQRES 1 B 116 GLY PRO THR ASN PHE GLU LYS GLU TYR ASP LEU GLU LYS SEQRES 2 B 116 LEU VAL ASN ASN SER LEU ASP LEU LEU SER ILE GLN ARG SEQRES 3 B 116 LEU ASP GLY THR VAL LEU GLN VAL ASN PRO ALA PHE GLU SEQRES 4 B 116 ARG LEU LEU GLY TRP ARG GLU GLU GLU LEU ILE GLY ARG SEQRES 5 B 116 ASN PRO PHE HIS LEU LEU HIS PRO GLU ASP ARG GLU SER SEQRES 6 B 116 THR PHE GLN GLU PHE LYS LYS LEU ASN GLN GLY LEU PRO SEQRES 7 B 116 VAL PHE ALA PHE GLN ASN ARG PHE LEU CYS SER ASP GLY SEQRES 8 B 116 THR TYR LYS TYR PHE SER TRP THR ALA SER PRO ASP LEU SEQRES 9 B 116 SER ALA GLY LEU ILE TYR VAL THR GLY ARG ASP ILE SEQRES 1 C 116 GLY PRO THR ASN PHE GLU LYS GLU TYR ASP LEU GLU LYS SEQRES 2 C 116 LEU VAL ASN ASN SER LEU ASP LEU LEU SER ILE GLN ARG SEQRES 3 C 116 LEU ASP GLY THR VAL LEU GLN VAL ASN PRO ALA PHE GLU SEQRES 4 C 116 ARG LEU LEU GLY TRP ARG GLU GLU GLU LEU ILE GLY ARG SEQRES 5 C 116 ASN PRO PHE HIS LEU LEU HIS PRO GLU ASP ARG GLU SER SEQRES 6 C 116 THR PHE GLN GLU PHE LYS LYS LEU ASN GLN GLY LEU PRO SEQRES 7 C 116 VAL PHE ALA PHE GLN ASN ARG PHE LEU CYS SER ASP GLY SEQRES 8 C 116 THR TYR LYS TYR PHE SER TRP THR ALA SER PRO ASP LEU SEQRES 9 C 116 SER ALA GLY LEU ILE TYR VAL THR GLY ARG ASP ILE FORMUL 4 HOH *7(H2 O) HELIX 1 AA1 LYS A 7 ASN A 17 1 11 HELIX 2 AA2 PRO A 36 GLY A 43 1 8 HELIX 3 AA3 ARG A 45 LEU A 49 5 5 HELIX 4 AA4 HIS A 59 GLU A 61 5 3 HELIX 5 AA5 ASP A 62 GLN A 75 1 14 HELIX 6 AA6 LEU B 11 ASN B 17 1 7 HELIX 7 AA7 PRO B 36 LEU B 42 1 7 HELIX 8 AA8 ARG B 45 LEU B 49 5 5 HELIX 9 AA9 ASN B 53 LEU B 57 5 5 HELIX 10 AB1 HIS B 59 GLU B 61 5 3 HELIX 11 AB2 ASP B 62 GLN B 75 1 14 HELIX 12 AB3 ASP C 10 ASN C 17 1 8 HELIX 13 AB4 PRO C 36 GLY C 43 1 8 HELIX 14 AB5 ARG C 45 LEU C 49 5 5 HELIX 15 AB6 ASN C 53 LEU C 57 5 5 HELIX 16 AB7 HIS C 59 GLU C 61 5 3 HELIX 17 AB8 ASP C 62 GLN C 75 1 14 SHEET 1 AA1 5 VAL A 31 VAL A 34 0 SHEET 2 AA1 5 LEU A 21 ARG A 26 -1 N ILE A 24 O LEU A 32 SHEET 3 AA1 5 LEU A 108 ASP A 115 -1 O VAL A 111 N SER A 23 SHEET 4 AA1 5 TYR A 93 ASP A 103 -1 N THR A 99 O THR A 112 SHEET 5 AA1 5 VAL A 79 LEU A 87 -1 N PHE A 82 O TRP A 98 SHEET 1 AA2 5 VAL B 31 VAL B 34 0 SHEET 2 AA2 5 LEU B 21 ARG B 26 -1 N ILE B 24 O LEU B 32 SHEET 3 AA2 5 LEU B 108 ASP B 115 -1 O VAL B 111 N SER B 23 SHEET 4 AA2 5 TYR B 93 ASP B 103 -1 N THR B 99 O THR B 112 SHEET 5 AA2 5 VAL B 79 LEU B 87 -1 N PHE B 82 O TRP B 98 SHEET 1 AA3 5 VAL C 31 VAL C 34 0 SHEET 2 AA3 5 LEU C 21 ARG C 26 -1 N ILE C 24 O LEU C 32 SHEET 3 AA3 5 LEU C 108 ASP C 115 -1 O VAL C 111 N SER C 23 SHEET 4 AA3 5 TYR C 93 ASP C 103 -1 N THR C 99 O THR C 112 SHEET 5 AA3 5 VAL C 79 LEU C 87 -1 N PHE C 82 O TRP C 98 CRYST1 54.910 144.560 48.650 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020555 0.00000