HEADER MEMBRANE PROTEIN 22-JUL-23 8PX9 TITLE STRUCTURE OF THE ANTIBACTERIAL PEPTIDE ABC TRANSPORTER MCJD, SOLVED AT TITLE 2 WAVELENGTH 2.75 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROCIN-J25 EXPORT ATP-BINDING/PERMEASE PROTEIN MCJD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MICROCIN-J25 IMMUNITY PROTEIN,MICROCIN-J25 SECRETION ATP- COMPND 5 BINDING PROTEIN MCJD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MCJD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, ABC TRANSPORTER EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.ORR,K.BOUNTRA,K.BEIS,A.WAGNER REVDAT 1 25-OCT-23 8PX9 0 JRNL AUTH K.EL OMARI,R.DUMAN,V.MYKHAYLYK,C.M.ORR,M.LATIMER-SMITH, JRNL AUTH 2 G.WINTER,V.GRAMA,F.QU,K.BOUNTRA,H.S.KWONG,M.ROMANO,R.I.REIS, JRNL AUTH 3 L.VOGELEY,L.VECCHIA,C.D.OWEN,S.WITTMANN,M.RENNER,M.SENDA, JRNL AUTH 4 N.MATSUGAKI,Y.KAWANO,T.A.BOWDEN,I.MORAES,J.M.GRIMES, JRNL AUTH 5 E.J.MANCINI,M.A.WALSH,C.R.GUZZO,R.J.OWENS,E.Y.JONES, JRNL AUTH 6 D.G.BROWN,D.I.STUART,K.BEIS,A.WAGNER JRNL TITL EXPERIMENTAL PHASING OPPORTUNITIES FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY AT VERY LONG WAVELENGTHS. JRNL REF COMMUN CHEM V. 6 219 2023 JRNL REFN ESSN 2399-3669 JRNL PMID 37828292 JRNL DOI 10.1038/S42004-023-01014-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.294 REMARK 3 R VALUE (WORKING SET) : 0.292 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3549 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.5780 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.5800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 163.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.68000 REMARK 3 B22 (A**2) : 3.23000 REMARK 3 B33 (A**2) : -7.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.693 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.403 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.708 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 103.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.890 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9218 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 8976 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12486 ; 1.547 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20580 ; 0.789 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1130 ; 3.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ; 5.145 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1666 ;15.242 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1500 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10524 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2142 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4532 ; 7.555 ; 8.327 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4532 ; 7.555 ; 8.327 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5658 ;11.399 ;15.076 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5659 ;11.399 ;15.077 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4686 ; 7.844 ; 9.005 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4686 ; 7.843 ; 9.005 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6829 ;12.361 ;16.389 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 37134 ;18.144 ;01.630 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 37135 ;18.144 ;01.630 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2827 -23.5106 42.4310 REMARK 3 T TENSOR REMARK 3 T11: 1.2813 T22: 1.0738 REMARK 3 T33: 0.0720 T12: 0.0196 REMARK 3 T13: -0.0154 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4028 L22: 0.6454 REMARK 3 L33: 3.5385 L12: -0.0004 REMARK 3 L13: -0.2270 L23: 0.6513 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.1205 S13: -0.1503 REMARK 3 S21: 0.0316 S22: -0.0313 S23: -0.0133 REMARK 3 S31: 0.7104 S32: -0.0268 S33: -0.0120 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 601 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2930 -3.1307 40.1313 REMARK 3 T TENSOR REMARK 3 T11: 1.3095 T22: 1.0812 REMARK 3 T33: 0.0284 T12: 0.0540 REMARK 3 T13: 0.0193 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.3121 L22: 0.3903 REMARK 3 L33: 3.8277 L12: 0.0541 REMARK 3 L13: 0.2779 L23: 0.1910 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.0894 S13: 0.0454 REMARK 3 S21: -0.0842 S22: -0.0513 S23: 0.0942 REMARK 3 S31: -0.4915 S32: -0.0810 S33: 0.0702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.7552 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 54.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 54.60 REMARK 200 R MERGE (I) : 0.21460 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 0.1 M AMMONIUM SULPHATE, REMARK 280 100 MM HEPES PH 7.5 AND 22% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 116.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 GLU A 326 REMARK 465 ASN A 327 REMARK 465 LYS A 328 REMARK 465 ALA A 329 REMARK 465 THR A 330 REMARK 465 SER A 331 REMARK 465 PRO A 332 REMARK 465 SER A 333 REMARK 465 ILE A 334 REMARK 465 PRO A 335 REMARK 465 PHE A 336 REMARK 465 LEU A 337 REMARK 465 ASN A 338 REMARK 465 MET A 339 REMARK 465 GLU A 340 REMARK 465 ARG A 341 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 327 REMARK 465 LYS B 328 REMARK 465 ALA B 329 REMARK 465 THR B 330 REMARK 465 SER B 331 REMARK 465 GLU B 580 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 120 -166.00 -105.68 REMARK 500 VAL A 143 -74.29 -68.70 REMARK 500 ILE A 147 -74.11 -115.03 REMARK 500 ASN A 223 -122.89 58.07 REMARK 500 PHE A 527 75.98 -118.62 REMARK 500 ASP A 529 59.90 -94.25 REMARK 500 ILE B 147 -71.16 -113.50 REMARK 500 ASN B 223 -125.95 59.63 REMARK 500 ASP B 433 -169.60 -163.91 REMARK 500 PHE B 527 76.49 -116.44 REMARK 500 ASP B 529 56.91 -95.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 563 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 385 OG REMARK 620 2 GLN A 426 OE1 89.6 REMARK 620 3 ANP A 602 O3G 172.8 94.2 REMARK 620 4 ANP A 602 O2B 82.4 165.8 92.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 385 OG REMARK 620 2 GLN B 426 OE1 89.8 REMARK 620 3 ANP B 600 O3G 168.5 95.9 REMARK 620 4 ANP B 600 O2B 84.6 166.5 87.6 REMARK 620 N 1 2 3 DBREF 8PX9 A 1 580 UNP Q9X2W0 MCJD_ECOLX 1 580 DBREF 8PX9 B 1 580 UNP Q9X2W0 MCJD_ECOLX 1 580 SEQRES 1 A 580 MET GLU ARG LYS GLN LYS ASN SER LEU PHE ASN TYR ILE SEQRES 2 A 580 TYR SER LEU MET ASP VAL ARG GLY LYS PHE LEU PHE PHE SEQRES 3 A 580 SER MET LEU PHE ILE THR SER LEU SER SER ILE ILE ILE SEQRES 4 A 580 SER ILE SER PRO LEU ILE LEU ALA LYS ILE THR ASP LEU SEQRES 5 A 580 LEU SER GLY SER LEU SER ASN PHE SER TYR GLU TYR LEU SEQRES 6 A 580 VAL LEU LEU ALA CYS LEU TYR MET PHE CYS VAL ILE SER SEQRES 7 A 580 ASN LYS ALA SER VAL PHE LEU PHE MET ILE LEU GLN SER SEQRES 8 A 580 SER LEU ARG ILE ASN MET GLN LYS LYS MET SER LEU LYS SEQRES 9 A 580 TYR LEU ARG GLU LEU TYR ASN GLU ASN ILE THR ASN LEU SEQRES 10 A 580 SER LYS ASN ASN ALA GLY TYR THR THR GLN SER LEU ASN SEQRES 11 A 580 GLN ALA SER ASN ASP ILE TYR ILE LEU VAL ARG ASN VAL SEQRES 12 A 580 SER GLN ASN ILE LEU SER PRO VAL ILE GLN LEU ILE SER SEQRES 13 A 580 THR ILE VAL VAL VAL LEU SER THR LYS ASP TRP PHE SER SEQRES 14 A 580 ALA GLY VAL PHE PHE LEU TYR ILE LEU VAL PHE VAL ILE SEQRES 15 A 580 PHE ASN THR ARG LEU THR GLY SER LEU ALA SER LEU ARG SEQRES 16 A 580 LYS HIS SER MET ASP ILE THR LEU ASN SER TYR SER LEU SEQRES 17 A 580 LEU SER ASP THR VAL ASP ASN MET ILE ALA ALA LYS LYS SEQRES 18 A 580 ASN ASN ALA LEU ARG LEU ILE SER GLU ARG TYR GLU ASP SEQRES 19 A 580 ALA LEU THR GLN GLU ASN ASN ALA GLN LYS LYS TYR TRP SEQRES 20 A 580 LEU LEU SER SER LYS VAL LEU LEU LEU ASN SER LEU LEU SEQRES 21 A 580 ALA VAL ILE LEU PHE GLY SER VAL PHE ILE TYR ASN ILE SEQRES 22 A 580 LEU GLY VAL LEU ASN GLY VAL VAL SER ILE GLY HIS PHE SEQRES 23 A 580 ILE MET ILE THR SER TYR ILE ILE LEU LEU SER THR PRO SEQRES 24 A 580 VAL GLU ASN ILE GLY ALA LEU LEU SER GLU ILE ARG GLN SEQRES 25 A 580 SER MET SER SER LEU ALA GLY PHE ILE GLN ARG HIS ALA SEQRES 26 A 580 GLU ASN LYS ALA THR SER PRO SER ILE PRO PHE LEU ASN SEQRES 27 A 580 MET GLU ARG LYS LEU ASN LEU SER ILE ARG GLU LEU SER SEQRES 28 A 580 PHE SER TYR SER ASP ASP LYS LYS ILE LEU ASN SER VAL SEQRES 29 A 580 SER LEU ASP LEU PHE THR GLY LYS MET TYR SER LEU THR SEQRES 30 A 580 GLY PRO SER GLY SER GLY LYS SER THR LEU VAL LYS ILE SEQRES 31 A 580 ILE SER GLY TYR TYR LYS ASN TYR PHE GLY ASP ILE TYR SEQRES 32 A 580 LEU ASN ASP ILE SER LEU ARG ASN ILE SER ASP GLU ASP SEQRES 33 A 580 LEU ASN ASP ALA ILE TYR TYR LEU THR GLN ASP ASP TYR SEQRES 34 A 580 ILE PHE MET ASP THR LEU ARG PHE ASN LEU ARG LEU ALA SEQRES 35 A 580 ASN TYR ASP ALA SER GLU ASN GLU ILE PHE LYS VAL LEU SEQRES 36 A 580 LYS LEU ALA ASN LEU SER VAL VAL ASN ASN GLU PRO VAL SEQRES 37 A 580 SER LEU ASP THR HIS LEU ILE ASN ARG GLY ASN ASN TYR SEQRES 38 A 580 SER GLY GLY GLN LYS GLN ARG ILE SER LEU ALA ARG LEU SEQRES 39 A 580 PHE LEU ARG LYS PRO ALA ILE ILE ILE ILE ASP GLU ALA SEQRES 40 A 580 THR SER ALA LEU ASP TYR ILE ASN GLU SER GLU ILE LEU SEQRES 41 A 580 SER SER ILE ARG THR HIS PHE PRO ASP ALA LEU ILE ILE SEQRES 42 A 580 ASN ILE SER HIS ARG ILE ASN LEU LEU GLU CYS SER ASP SEQRES 43 A 580 CYS VAL TYR VAL LEU ASN GLU GLY ASN ILE VAL ALA SER SEQRES 44 A 580 GLY HIS PHE ARG ASP LEU MET VAL SER ASN GLU TYR ILE SEQRES 45 A 580 SER GLY LEU ALA SER VAL THR GLU SEQRES 1 B 580 MET GLU ARG LYS GLN LYS ASN SER LEU PHE ASN TYR ILE SEQRES 2 B 580 TYR SER LEU MET ASP VAL ARG GLY LYS PHE LEU PHE PHE SEQRES 3 B 580 SER MET LEU PHE ILE THR SER LEU SER SER ILE ILE ILE SEQRES 4 B 580 SER ILE SER PRO LEU ILE LEU ALA LYS ILE THR ASP LEU SEQRES 5 B 580 LEU SER GLY SER LEU SER ASN PHE SER TYR GLU TYR LEU SEQRES 6 B 580 VAL LEU LEU ALA CYS LEU TYR MET PHE CYS VAL ILE SER SEQRES 7 B 580 ASN LYS ALA SER VAL PHE LEU PHE MET ILE LEU GLN SER SEQRES 8 B 580 SER LEU ARG ILE ASN MET GLN LYS LYS MET SER LEU LYS SEQRES 9 B 580 TYR LEU ARG GLU LEU TYR ASN GLU ASN ILE THR ASN LEU SEQRES 10 B 580 SER LYS ASN ASN ALA GLY TYR THR THR GLN SER LEU ASN SEQRES 11 B 580 GLN ALA SER ASN ASP ILE TYR ILE LEU VAL ARG ASN VAL SEQRES 12 B 580 SER GLN ASN ILE LEU SER PRO VAL ILE GLN LEU ILE SER SEQRES 13 B 580 THR ILE VAL VAL VAL LEU SER THR LYS ASP TRP PHE SER SEQRES 14 B 580 ALA GLY VAL PHE PHE LEU TYR ILE LEU VAL PHE VAL ILE SEQRES 15 B 580 PHE ASN THR ARG LEU THR GLY SER LEU ALA SER LEU ARG SEQRES 16 B 580 LYS HIS SER MET ASP ILE THR LEU ASN SER TYR SER LEU SEQRES 17 B 580 LEU SER ASP THR VAL ASP ASN MET ILE ALA ALA LYS LYS SEQRES 18 B 580 ASN ASN ALA LEU ARG LEU ILE SER GLU ARG TYR GLU ASP SEQRES 19 B 580 ALA LEU THR GLN GLU ASN ASN ALA GLN LYS LYS TYR TRP SEQRES 20 B 580 LEU LEU SER SER LYS VAL LEU LEU LEU ASN SER LEU LEU SEQRES 21 B 580 ALA VAL ILE LEU PHE GLY SER VAL PHE ILE TYR ASN ILE SEQRES 22 B 580 LEU GLY VAL LEU ASN GLY VAL VAL SER ILE GLY HIS PHE SEQRES 23 B 580 ILE MET ILE THR SER TYR ILE ILE LEU LEU SER THR PRO SEQRES 24 B 580 VAL GLU ASN ILE GLY ALA LEU LEU SER GLU ILE ARG GLN SEQRES 25 B 580 SER MET SER SER LEU ALA GLY PHE ILE GLN ARG HIS ALA SEQRES 26 B 580 GLU ASN LYS ALA THR SER PRO SER ILE PRO PHE LEU ASN SEQRES 27 B 580 MET GLU ARG LYS LEU ASN LEU SER ILE ARG GLU LEU SER SEQRES 28 B 580 PHE SER TYR SER ASP ASP LYS LYS ILE LEU ASN SER VAL SEQRES 29 B 580 SER LEU ASP LEU PHE THR GLY LYS MET TYR SER LEU THR SEQRES 30 B 580 GLY PRO SER GLY SER GLY LYS SER THR LEU VAL LYS ILE SEQRES 31 B 580 ILE SER GLY TYR TYR LYS ASN TYR PHE GLY ASP ILE TYR SEQRES 32 B 580 LEU ASN ASP ILE SER LEU ARG ASN ILE SER ASP GLU ASP SEQRES 33 B 580 LEU ASN ASP ALA ILE TYR TYR LEU THR GLN ASP ASP TYR SEQRES 34 B 580 ILE PHE MET ASP THR LEU ARG PHE ASN LEU ARG LEU ALA SEQRES 35 B 580 ASN TYR ASP ALA SER GLU ASN GLU ILE PHE LYS VAL LEU SEQRES 36 B 580 LYS LEU ALA ASN LEU SER VAL VAL ASN ASN GLU PRO VAL SEQRES 37 B 580 SER LEU ASP THR HIS LEU ILE ASN ARG GLY ASN ASN TYR SEQRES 38 B 580 SER GLY GLY GLN LYS GLN ARG ILE SER LEU ALA ARG LEU SEQRES 39 B 580 PHE LEU ARG LYS PRO ALA ILE ILE ILE ILE ASP GLU ALA SEQRES 40 B 580 THR SER ALA LEU ASP TYR ILE ASN GLU SER GLU ILE LEU SEQRES 41 B 580 SER SER ILE ARG THR HIS PHE PRO ASP ALA LEU ILE ILE SEQRES 42 B 580 ASN ILE SER HIS ARG ILE ASN LEU LEU GLU CYS SER ASP SEQRES 43 B 580 CYS VAL TYR VAL LEU ASN GLU GLY ASN ILE VAL ALA SER SEQRES 44 B 580 GLY HIS PHE ARG ASP LEU MET VAL SER ASN GLU TYR ILE SEQRES 45 B 580 SER GLY LEU ALA SER VAL THR GLU HET MG A 601 1 HET ANP A 602 31 HET ANP B 600 31 HET MG B 601 1 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) HELIX 1 AA1 SER A 8 LEU A 16 1 9 HELIX 2 AA2 ASP A 18 SER A 40 1 23 HELIX 3 AA3 ILE A 41 GLY A 55 1 15 HELIX 4 AA4 SER A 58 ASN A 111 1 54 HELIX 5 AA5 ASN A 113 LYS A 119 1 7 HELIX 6 AA6 ASN A 121 ILE A 147 1 27 HELIX 7 AA7 ILE A 147 THR A 164 1 18 HELIX 8 AA8 ASP A 166 ASN A 215 1 50 HELIX 9 AA9 ASN A 215 ASN A 222 1 8 HELIX 10 AB1 ALA A 224 ASN A 278 1 55 HELIX 11 AB2 SER A 282 ALA A 325 1 44 HELIX 12 AB3 GLY A 383 GLY A 393 1 11 HELIX 13 AB4 SER A 408 ILE A 412 5 5 HELIX 14 AB5 SER A 413 ALA A 420 1 8 HELIX 15 AB6 THR A 434 LEU A 441 1 8 HELIX 16 AB7 SER A 447 ALA A 458 1 12 HELIX 17 AB8 ILE A 475 ASN A 479 5 5 HELIX 18 AB9 SER A 482 ARG A 497 1 16 HELIX 19 AC1 ASP A 512 PHE A 527 1 16 HELIX 20 AC2 ARG A 538 CYS A 544 1 7 HELIX 21 AC3 HIS A 561 ASN A 569 1 9 HELIX 22 AC4 ASN A 569 SER A 577 1 9 HELIX 23 AC5 LEU B 9 LEU B 16 1 8 HELIX 24 AC6 ASP B 18 SER B 40 1 23 HELIX 25 AC7 ILE B 41 SER B 54 1 14 HELIX 26 AC8 SER B 61 ASN B 111 1 51 HELIX 27 AC9 ASN B 113 SER B 118 1 6 HELIX 28 AD1 ASN B 121 ASN B 146 1 26 HELIX 29 AD2 ILE B 147 THR B 164 1 18 HELIX 30 AD3 ASP B 166 ASN B 215 1 50 HELIX 31 AD4 ASN B 215 ASN B 222 1 8 HELIX 32 AD5 ALA B 224 ASN B 278 1 55 HELIX 33 AD6 SER B 282 GLU B 326 1 45 HELIX 34 AD7 GLY B 383 GLY B 393 1 11 HELIX 35 AD8 SER B 408 ILE B 412 5 5 HELIX 36 AD9 SER B 413 ALA B 420 1 8 HELIX 37 AE1 THR B 434 LEU B 441 1 8 HELIX 38 AE2 SER B 447 ALA B 458 1 12 HELIX 39 AE3 ILE B 475 ASN B 479 5 5 HELIX 40 AE4 SER B 482 ARG B 497 1 16 HELIX 41 AE5 ASP B 512 PHE B 527 1 16 HELIX 42 AE6 ARG B 538 CYS B 544 1 7 HELIX 43 AE7 HIS B 561 ASN B 569 1 9 HELIX 44 AE8 ASN B 569 SER B 577 1 9 SHEET 1 AA1 3 LEU A 361 ASP A 367 0 SHEET 2 AA1 3 LEU A 345 PHE A 352 -1 N ILE A 347 O LEU A 366 SHEET 3 AA1 3 PHE A 399 LEU A 404 -1 O ASP A 401 N ARG A 348 SHEET 1 AA2 6 ILE A 421 LEU A 424 0 SHEET 2 AA2 6 ILE A 501 ASP A 505 1 O ILE A 503 N LEU A 424 SHEET 3 AA2 6 LEU A 531 ILE A 535 1 O ILE A 535 N ILE A 504 SHEET 4 AA2 6 MET A 373 THR A 377 1 N TYR A 374 O ILE A 532 SHEET 5 AA2 6 CYS A 547 ASN A 552 1 O LEU A 551 N THR A 377 SHEET 6 AA2 6 ASN A 555 GLY A 560 -1 O ASN A 555 N ASN A 552 SHEET 1 AA3 2 VAL A 462 VAL A 463 0 SHEET 2 AA3 2 GLU A 466 PRO A 467 -1 O GLU A 466 N VAL A 463 SHEET 1 AA4 3 LEU B 361 LEU B 368 0 SHEET 2 AA4 3 LEU B 345 PHE B 352 -1 N LEU B 345 O LEU B 368 SHEET 3 AA4 3 PHE B 399 LEU B 404 -1 O ASP B 401 N ARG B 348 SHEET 1 AA5 6 ILE B 421 LEU B 424 0 SHEET 2 AA5 6 ILE B 501 ASP B 505 1 O ILE B 503 N LEU B 424 SHEET 3 AA5 6 LEU B 531 ILE B 535 1 O ILE B 535 N ILE B 504 SHEET 4 AA5 6 MET B 373 THR B 377 1 N TYR B 374 O ILE B 532 SHEET 5 AA5 6 CYS B 547 ASN B 552 1 O LEU B 551 N THR B 377 SHEET 6 AA5 6 ASN B 555 GLY B 560 -1 O ASN B 555 N ASN B 552 SHEET 1 AA6 2 VAL B 462 VAL B 463 0 SHEET 2 AA6 2 GLU B 466 PRO B 467 -1 O GLU B 466 N VAL B 463 LINK OG SER A 385 MG MG A 601 1555 1555 1.98 LINK OE1 GLN A 426 MG MG A 601 1555 1555 2.00 LINK MG MG A 601 O3G ANP A 602 1555 1555 1.86 LINK MG MG A 601 O2B ANP A 602 1555 1555 2.19 LINK OG SER B 385 MG MG B 601 1555 1555 1.98 LINK OE1 GLN B 426 MG MG B 601 1555 1555 2.01 LINK O3G ANP B 600 MG MG B 601 1555 1555 1.99 LINK O2B ANP B 600 MG MG B 601 1555 1555 2.00 CRYST1 81.190 109.320 233.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004285 0.00000