HEADER OXIDOREDUCTASE 23-JUL-23 8PXF TITLE CRYSTAL STRUCTURE OF THE FULL LENGTH HH1412 DSB HOMODIMER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISULFIDE BOND OXIDOREDUCTASE/ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER HEPATICUS ATCC 51449; SOURCE 3 ORGANISM_TAXID: 235279; SOURCE 4 GENE: HH_1412; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: (DE3) LACIQ; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DISULFIDE BOND FORMATION, DSB, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,M.ORLIKOWSKA,P.ROSZCZENKO-JASINSKA,E.K.JAGUSZTYN-KRYNICKA REVDAT 1 07-AUG-24 8PXF 0 JRNL AUTH P.ROSZCZENKO-JASINSKA JRNL TITL CRYSTAL STRUCTURES OF DISULFIDE OXIDOREDUCTASE/ISOMERASE JRNL TITL 2 FROM HELICOBACTER HEPATICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6300 - 4.5900 1.00 2949 156 0.1998 0.2246 REMARK 3 2 4.5900 - 3.6400 1.00 2787 146 0.1956 0.2227 REMARK 3 3 3.6400 - 3.1800 1.00 2774 146 0.2440 0.2818 REMARK 3 4 3.1800 - 2.8900 1.00 2733 144 0.2701 0.3392 REMARK 3 5 2.8900 - 2.6800 1.00 2718 143 0.3058 0.3637 REMARK 3 6 2.6800 - 2.5300 1.00 2715 143 0.2944 0.3746 REMARK 3 7 2.5300 - 2.4000 1.00 2701 142 0.2905 0.3375 REMARK 3 8 2.4000 - 2.2900 1.00 2681 142 0.3019 0.3282 REMARK 3 9 2.2900 - 2.2100 1.00 2707 142 0.3453 0.3569 REMARK 3 10 2.2100 - 2.1300 1.00 2680 141 0.3912 0.4295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 NULL REMARK 3 ANGLE : 1.566 NULL REMARK 3 CHIRALITY : 0.093 520 REMARK 3 PLANARITY : 0.008 584 REMARK 3 DIHEDRAL : 17.963 1296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0432 28.8425 23.8613 REMARK 3 T TENSOR REMARK 3 T11: 0.5234 T22: 0.5842 REMARK 3 T33: 0.7453 T12: -0.0273 REMARK 3 T13: -0.0323 T23: -0.0772 REMARK 3 L TENSOR REMARK 3 L11: 0.4514 L22: 3.1679 REMARK 3 L33: 3.6567 L12: -0.5545 REMARK 3 L13: -1.5716 L23: 1.9595 REMARK 3 S TENSOR REMARK 3 S11: -0.1858 S12: -0.0233 S13: -0.1615 REMARK 3 S21: 0.3027 S22: 0.1294 S23: -0.2445 REMARK 3 S31: 0.1392 S32: 0.2676 S33: 0.1043 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8063 38.4126 44.5038 REMARK 3 T TENSOR REMARK 3 T11: 0.6957 T22: 0.4148 REMARK 3 T33: 0.3753 T12: 0.0280 REMARK 3 T13: 0.0013 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 6.6606 L22: 2.4598 REMARK 3 L33: 5.2853 L12: -0.3102 REMARK 3 L13: 1.1246 L23: -0.2489 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.0650 S13: 0.0239 REMARK 3 S21: -0.0734 S22: -0.0403 S23: 0.2091 REMARK 3 S31: -0.1819 S32: -0.4391 S33: 0.0732 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1423 3.8353 14.0028 REMARK 3 T TENSOR REMARK 3 T11: 0.8531 T22: 0.7444 REMARK 3 T33: 1.1213 T12: 0.1046 REMARK 3 T13: 0.1619 T23: -0.1597 REMARK 3 L TENSOR REMARK 3 L11: 4.3722 L22: 3.1657 REMARK 3 L33: 9.3623 L12: -1.5566 REMARK 3 L13: 5.1516 L23: 1.1198 REMARK 3 S TENSOR REMARK 3 S11: 0.1286 S12: 0.7092 S13: -1.7748 REMARK 3 S21: -0.2198 S22: 1.0570 S23: -0.5669 REMARK 3 S31: 0.4113 S32: 0.9744 S33: -1.1602 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9430 7.0248 11.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.8234 T22: 0.7560 REMARK 3 T33: 1.1267 T12: 0.0846 REMARK 3 T13: 0.4211 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 4.6518 L22: 3.7657 REMARK 3 L33: 1.5640 L12: 2.3883 REMARK 3 L13: 1.5227 L23: 2.3463 REMARK 3 S TENSOR REMARK 3 S11: -1.1099 S12: 0.0689 S13: -1.2841 REMARK 3 S21: -0.1891 S22: 1.2421 S23: 0.6250 REMARK 3 S31: 1.1974 S32: 0.2506 S33: 0.0876 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3508 12.6236 12.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.5993 T22: 0.5773 REMARK 3 T33: 0.7993 T12: 0.0211 REMARK 3 T13: 0.0776 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 3.0908 L22: 5.6750 REMARK 3 L33: 3.0857 L12: 2.2122 REMARK 3 L13: 2.5083 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.2382 S12: -0.2434 S13: 0.2436 REMARK 3 S21: -0.1708 S22: 0.3574 S23: 0.4851 REMARK 3 S31: -0.2020 S32: -0.2517 S33: -0.1286 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0097 8.1321 5.2204 REMARK 3 T TENSOR REMARK 3 T11: 0.5872 T22: 0.6238 REMARK 3 T33: 0.7501 T12: 0.0057 REMARK 3 T13: 0.0178 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.8182 L22: 8.3061 REMARK 3 L33: 1.0159 L12: 7.4397 REMARK 3 L13: 0.4207 L23: 0.6043 REMARK 3 S TENSOR REMARK 3 S11: -0.4654 S12: 0.2795 S13: 0.3301 REMARK 3 S21: -0.4650 S22: 0.4120 S23: 0.6346 REMARK 3 S31: -0.3490 S32: 0.1908 S33: -0.0271 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5394 -1.5454 13.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.5237 T22: 0.7265 REMARK 3 T33: 0.7326 T12: 0.0732 REMARK 3 T13: 0.0512 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 6.1446 L22: 3.6777 REMARK 3 L33: 5.6897 L12: -1.2280 REMARK 3 L13: -0.4667 L23: -0.6010 REMARK 3 S TENSOR REMARK 3 S11: -0.1341 S12: -0.7485 S13: 0.5000 REMARK 3 S21: 0.4652 S22: 0.2024 S23: 0.0333 REMARK 3 S31: -0.4248 S32: -0.3826 S33: -0.1288 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2612 -11.2364 21.3909 REMARK 3 T TENSOR REMARK 3 T11: 0.7291 T22: 1.1795 REMARK 3 T33: 0.7135 T12: 0.1883 REMARK 3 T13: 0.0419 T23: 0.1560 REMARK 3 L TENSOR REMARK 3 L11: 5.7950 L22: 2.3056 REMARK 3 L33: 2.1754 L12: -0.3478 REMARK 3 L13: -1.9149 L23: -0.5708 REMARK 3 S TENSOR REMARK 3 S11: -0.6322 S12: -1.7637 S13: -0.3890 REMARK 3 S21: 0.7876 S22: 0.4387 S23: 0.0374 REMARK 3 S31: 0.0350 S32: 0.1873 S33: 0.2434 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 202 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2614 4.2418 9.3982 REMARK 3 T TENSOR REMARK 3 T11: 0.5983 T22: 0.6922 REMARK 3 T33: 0.8805 T12: -0.0442 REMARK 3 T13: -0.0801 T23: -0.1823 REMARK 3 L TENSOR REMARK 3 L11: 5.1829 L22: 7.3793 REMARK 3 L33: 4.3402 L12: -0.0240 REMARK 3 L13: -0.6608 L23: -2.5432 REMARK 3 S TENSOR REMARK 3 S11: 0.5598 S12: 0.4434 S13: -0.4790 REMARK 3 S21: 0.0018 S22: 0.0242 S23: 1.4230 REMARK 3 S31: -0.0676 S32: -0.3487 S33: -0.4699 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 44.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.45 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.97 REMARK 200 R MERGE FOR SHELL (I) : 1.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS A4; 0.06 M DIVALENTS, 0.1 M REMARK 280 BUFFER SYSTEM 1 6.5, 50 % V/V PRECIPITANT MIX 4, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.26000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.63000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.63000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.63000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.89000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.63000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.63000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.63000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.89000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 10 O ASN B 13 1.50 REMARK 500 O LYS A 175 OG1 THR A 178 2.19 REMARK 500 O ALA A 97 NZ LYS A 162 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 83 CD2 HIS B 215 3555 1.44 REMARK 500 OE2 GLU A 35 OE2 GLU B 35 5555 1.47 REMARK 500 OE1 GLN A 16 O ILE B 15 5555 1.95 REMARK 500 N ASN A 37 OD1 ASN B 18 5555 1.97 REMARK 500 NH2 ARG A 83 NE2 HIS B 215 3555 2.06 REMARK 500 NH2 ARG A 83 CG HIS B 215 3555 2.07 REMARK 500 CZ ARG A 83 CD2 HIS B 215 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 212 N PRO B 212 CA 0.229 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 93 CA - CB - CG ANGL. DEV. = -23.2 DEGREES REMARK 500 LYS A 93 CB - CG - CD ANGL. DEV. = 27.7 DEGREES REMARK 500 PRO B 212 C - N - CA ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO B 212 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 186 -178.90 -172.68 REMARK 500 SER B 27 28.74 47.19 REMARK 500 ASN B 38 -4.28 69.81 REMARK 500 GLN B 95 45.38 -93.21 REMARK 500 PRO B 107 133.21 -35.60 REMARK 500 LEU B 147 53.56 -112.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PXF A 30 212 UNP Q7VGB0 Q7VGB0_HELHP 2 184 DBREF 8PXF B 30 212 UNP Q7VGB0 Q7VGB0_HELHP 2 184 SEQADV 8PXF MET A 1 UNP Q7VGB0 INITIATING METHIONINE SEQADV 8PXF ASP A 2 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LYS A 3 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ALA A 4 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLU A 5 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU A 6 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLN A 7 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LYS A 8 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF THR A 9 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU A 10 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLN A 11 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ALA A 12 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ASN A 13 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LYS A 14 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ILE A 15 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLN A 16 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLY A 17 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ASN A 18 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ILE A 19 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF VAL A 20 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER A 21 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER A 22 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER A 23 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ASP A 24 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU A 25 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLY A 26 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER A 27 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLY A 28 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU A 29 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS A 213 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS A 214 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS A 215 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS A 216 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS A 217 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS A 218 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF MET B 1 UNP Q7VGB0 INITIATING METHIONINE SEQADV 8PXF ASP B 2 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LYS B 3 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ALA B 4 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLU B 5 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU B 6 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLN B 7 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LYS B 8 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF THR B 9 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU B 10 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLN B 11 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ALA B 12 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ASN B 13 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LYS B 14 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ILE B 15 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLN B 16 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLY B 17 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ASN B 18 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ILE B 19 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF VAL B 20 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER B 21 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER B 22 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER B 23 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF ASP B 24 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU B 25 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLY B 26 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF SER B 27 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF GLY B 28 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF LEU B 29 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS B 213 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS B 214 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS B 215 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS B 216 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS B 217 UNP Q7VGB0 EXPRESSION TAG SEQADV 8PXF HIS B 218 UNP Q7VGB0 EXPRESSION TAG SEQRES 1 A 218 MET ASP LYS ALA GLU LEU GLN LYS THR LEU GLN ALA ASN SEQRES 2 A 218 LYS ILE GLN GLY ASN ILE VAL SER SER SER ASP LEU GLY SEQRES 3 A 218 SER GLY LEU SER MET VAL ILE VAL GLU VAL ASN ASN GLN SEQRES 4 A 218 GLN ALA PRO PHE LEU ALA THR ASP ASP GLY LYS MET ILE SEQRES 5 A 218 PHE GLN ALA GLU VAL LEU ILE ALA GLN ASP LYS SER THR SEQRES 6 A 218 GLU SER ARG VAL GLN GLU PHE TYR LYS ASN LEU TYR GLU SEQRES 7 A 218 LYS GLU LYS LEU ARG ILE SER ALA LYS LEU LYS GLU VAL SEQRES 8 A 218 PHE LYS ALA GLN LYS ALA ASN VAL PHE THR PHE LYS ALA SEQRES 9 A 218 LYS LYS PRO SER ASN LYS THR ILE TYR ILE VAL SER ASP SEQRES 10 A 218 PHE ASN CYS PRO TYR CYS GLN ARG GLU PHE ALA ASN LEU SEQRES 11 A 218 ASP LYS ARG LEU GLU SER ALA ASN VAL GLU LEU LEU VAL SEQRES 12 A 218 VAL GLY PHE LEU GLY GLU ASP SER ILE LEU LYS ALA ALA SEQRES 13 A 218 ASN ALA LEU LYS ASN LYS SER GLY ASN GLN ALA LYS ASP SEQRES 14 A 218 ILE ALA MET LEU GLN LYS LEU TYR THR PRO LYS SER LYS SEQRES 15 A 218 GLY GLN SER MET ASP ILE LYS ALA ALA MET ALA LEU THR SEQRES 16 A 218 GLN ALA VAL ALA ASP THR GLY VAL ARG SER VAL PRO TYR SEQRES 17 A 218 ILE ILE GLU PRO HIS HIS HIS HIS HIS HIS SEQRES 1 B 218 MET ASP LYS ALA GLU LEU GLN LYS THR LEU GLN ALA ASN SEQRES 2 B 218 LYS ILE GLN GLY ASN ILE VAL SER SER SER ASP LEU GLY SEQRES 3 B 218 SER GLY LEU SER MET VAL ILE VAL GLU VAL ASN ASN GLN SEQRES 4 B 218 GLN ALA PRO PHE LEU ALA THR ASP ASP GLY LYS MET ILE SEQRES 5 B 218 PHE GLN ALA GLU VAL LEU ILE ALA GLN ASP LYS SER THR SEQRES 6 B 218 GLU SER ARG VAL GLN GLU PHE TYR LYS ASN LEU TYR GLU SEQRES 7 B 218 LYS GLU LYS LEU ARG ILE SER ALA LYS LEU LYS GLU VAL SEQRES 8 B 218 PHE LYS ALA GLN LYS ALA ASN VAL PHE THR PHE LYS ALA SEQRES 9 B 218 LYS LYS PRO SER ASN LYS THR ILE TYR ILE VAL SER ASP SEQRES 10 B 218 PHE ASN CYS PRO TYR CYS GLN ARG GLU PHE ALA ASN LEU SEQRES 11 B 218 ASP LYS ARG LEU GLU SER ALA ASN VAL GLU LEU LEU VAL SEQRES 12 B 218 VAL GLY PHE LEU GLY GLU ASP SER ILE LEU LYS ALA ALA SEQRES 13 B 218 ASN ALA LEU LYS ASN LYS SER GLY ASN GLN ALA LYS ASP SEQRES 14 B 218 ILE ALA MET LEU GLN LYS LEU TYR THR PRO LYS SER LYS SEQRES 15 B 218 GLY GLN SER MET ASP ILE LYS ALA ALA MET ALA LEU THR SEQRES 16 B 218 GLN ALA VAL ALA ASP THR GLY VAL ARG SER VAL PRO TYR SEQRES 17 B 218 ILE ILE GLU PRO HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *36(H2 O) HELIX 1 AA1 ASP A 2 ASN A 13 1 12 HELIX 2 AA2 ASP A 62 GLN A 95 1 34 HELIX 3 AA3 LYS A 96 VAL A 99 5 4 HELIX 4 AA4 CYS A 120 ASN A 129 1 10 HELIX 5 AA5 ASN A 129 ALA A 137 1 9 HELIX 6 AA6 GLY A 148 LYS A 162 1 15 HELIX 7 AA7 ASN A 165 THR A 178 1 14 HELIX 8 AA8 ILE A 188 THR A 201 1 14 HELIX 9 AA9 ASP B 2 ASN B 13 1 12 HELIX 10 AB1 ASP B 62 GLN B 95 1 34 HELIX 11 AB2 LYS B 96 VAL B 99 5 4 HELIX 12 AB3 CYS B 120 ASN B 129 1 10 HELIX 13 AB4 ASN B 129 ALA B 137 1 9 HELIX 14 AB5 GLY B 148 LYS B 162 1 15 HELIX 15 AB6 ASN B 165 TYR B 177 1 13 HELIX 16 AB7 ILE B 188 ASP B 200 1 13 SHEET 1 AA1 8 ASN A 18 GLY A 26 0 SHEET 2 AA1 8 LEU A 29 VAL A 36 -1 O MET A 31 N SER A 23 SHEET 3 AA1 8 GLN A 39 THR A 46 -1 O PHE A 43 N VAL A 32 SHEET 4 AA1 8 MET A 51 ALA A 60 -1 O PHE A 53 N LEU A 44 SHEET 5 AA1 8 MET B 51 ALA B 60 -1 O ILE B 59 N ILE A 52 SHEET 6 AA1 8 GLN B 39 THR B 46 -1 N LEU B 44 O PHE B 53 SHEET 7 AA1 8 LEU B 29 VAL B 36 -1 N VAL B 32 O PHE B 43 SHEET 8 AA1 8 ASN B 18 GLY B 26 -1 N GLY B 26 O LEU B 29 SHEET 1 AA2 4 PHE A 100 PHE A 102 0 SHEET 2 AA2 4 ASN A 138 VAL A 143 -1 O VAL A 139 N PHE A 102 SHEET 3 AA2 4 THR A 111 SER A 116 1 N ILE A 114 O GLU A 140 SHEET 4 AA2 4 TYR A 208 ILE A 210 -1 O TYR A 208 N VAL A 115 SHEET 1 AA3 4 PHE B 100 PHE B 102 0 SHEET 2 AA3 4 ASN B 138 VAL B 143 -1 O VAL B 139 N PHE B 102 SHEET 3 AA3 4 THR B 111 SER B 116 1 N ILE B 112 O GLU B 140 SHEET 4 AA3 4 TYR B 208 ILE B 210 -1 O TYR B 208 N VAL B 115 CISPEP 1 VAL A 206 PRO A 207 0 2.77 CISPEP 2 VAL B 206 PRO B 207 0 3.04 CRYST1 87.260 87.260 130.520 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007662 0.00000