HEADER OXIDOREDUCTASE 25-JUL-23 8PY5 TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND ACDV UNDER ANAEROBIC TITLE 2 CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, PENICILLINS, BIOSYNTHESIS, 2OG OXYGENASES, KEYWDS 2 ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 07-AUG-24 8PY5 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND ACDV UNDER JRNL TITL 2 ANAEROBIC CONDITIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9400 - 4.4500 1.00 2012 154 0.1643 0.1934 REMARK 3 2 4.4500 - 3.5400 1.00 1915 146 0.1423 0.1467 REMARK 3 3 3.5400 - 3.0900 1.00 1887 144 0.1749 0.2086 REMARK 3 4 3.0900 - 2.8100 1.00 1862 143 0.1973 0.2087 REMARK 3 5 2.8100 - 2.6100 1.00 1835 141 0.2834 0.3608 REMARK 3 6 2.6100 - 2.4500 1.00 1865 142 0.2728 0.2986 REMARK 3 7 2.4500 - 2.3300 1.00 1843 142 0.2384 0.2445 REMARK 3 8 2.3300 - 2.2300 1.00 1859 142 0.2272 0.2835 REMARK 3 9 2.2300 - 2.1400 1.00 1839 142 0.2471 0.3031 REMARK 3 10 2.1400 - 2.0700 1.00 1843 141 0.2740 0.3021 REMARK 3 11 2.0700 - 2.0000 1.00 1819 140 0.2783 0.3372 REMARK 3 12 2.0000 - 1.9500 0.99 1830 141 0.3069 0.3754 REMARK 3 13 1.9500 - 1.9000 0.99 1785 138 0.3224 0.3578 REMARK 3 14 1.9000 - 1.8500 0.97 1779 138 0.3727 0.4557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.315 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2744 REMARK 3 ANGLE : 0.543 3755 REMARK 3 CHIRALITY : 0.046 395 REMARK 3 PLANARITY : 0.004 502 REMARK 3 DIHEDRAL : 10.897 981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9678 -1.6713 7.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.1679 REMARK 3 T33: 0.1870 T12: -0.0119 REMARK 3 T13: 0.0329 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.5764 L22: 0.8577 REMARK 3 L33: 3.4365 L12: -0.1956 REMARK 3 L13: 0.9335 L23: -0.4954 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0928 S13: 0.0316 REMARK 3 S21: 0.0775 S22: 0.0318 S23: 0.1115 REMARK 3 S31: -0.0825 S32: -0.2737 S33: -0.0257 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9055 6.5409 -24.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.3241 T22: 0.2048 REMARK 3 T33: 0.1342 T12: 0.0129 REMARK 3 T13: -0.0010 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 8.2744 L22: 5.8901 REMARK 3 L33: 4.8769 L12: 0.9457 REMARK 3 L13: -1.9988 L23: 0.2455 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: 0.1241 S13: -0.0350 REMARK 3 S21: 0.2197 S22: -0.0775 S23: -0.0079 REMARK 3 S31: -0.6515 S32: 0.0823 S33: -0.0347 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4720 6.7126 -14.9685 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.1819 REMARK 3 T33: 0.1383 T12: -0.0238 REMARK 3 T13: 0.0260 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.7701 L22: 3.7235 REMARK 3 L33: 2.5748 L12: 0.4767 REMARK 3 L13: 0.2650 L23: 0.7097 REMARK 3 S TENSOR REMARK 3 S11: -0.1550 S12: 0.3306 S13: 0.1971 REMARK 3 S21: -0.2825 S22: 0.0907 S23: 0.0728 REMARK 3 S31: -0.4251 S32: 0.3092 S33: 0.0143 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6544 11.7890 -4.0534 REMARK 3 T TENSOR REMARK 3 T11: 0.2856 T22: 0.1573 REMARK 3 T33: 0.1966 T12: 0.0056 REMARK 3 T13: 0.0295 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.0409 L22: 1.2398 REMARK 3 L33: 2.6822 L12: -0.2258 REMARK 3 L13: -0.1899 L23: -0.5325 REMARK 3 S TENSOR REMARK 3 S11: 0.1117 S12: 0.1215 S13: 0.1491 REMARK 3 S21: -0.0963 S22: -0.0985 S23: 0.0417 REMARK 3 S31: -0.5164 S32: -0.0461 S33: -0.0140 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7486 10.6137 8.7367 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.1862 REMARK 3 T33: 0.2294 T12: -0.0768 REMARK 3 T13: 0.0170 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.9679 L22: 2.6169 REMARK 3 L33: 5.6271 L12: 0.2555 REMARK 3 L13: -0.6232 L23: -3.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: -0.2767 S13: 0.3205 REMARK 3 S21: 0.3840 S22: -0.0555 S23: -0.0706 REMARK 3 S31: -1.0783 S32: 0.5698 S33: -0.0303 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1215 -8.9415 -3.9232 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1276 REMARK 3 T33: 0.1470 T12: 0.0007 REMARK 3 T13: 0.0117 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.6947 L22: 1.6113 REMARK 3 L33: 2.8888 L12: 0.0903 REMARK 3 L13: 0.3497 L23: 0.2409 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.0039 S13: -0.1079 REMARK 3 S21: -0.0652 S22: -0.0326 S23: 0.0088 REMARK 3 S31: 0.1744 S32: 0.0551 S33: -0.0375 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7713 1.9946 10.3091 REMARK 3 T TENSOR REMARK 3 T11: 0.2332 T22: 0.4737 REMARK 3 T33: 0.2929 T12: -0.0752 REMARK 3 T13: -0.0182 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.0131 L22: 1.5694 REMARK 3 L33: 3.2006 L12: 0.2448 REMARK 3 L13: -1.0491 L23: -0.7650 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.0830 S13: -0.0486 REMARK 3 S21: 0.1478 S22: -0.2805 S23: -0.5038 REMARK 3 S31: -0.2107 S32: 1.4092 S33: 0.3643 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7952 -0.8247 -8.4896 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.3687 REMARK 3 T33: 0.2370 T12: -0.0196 REMARK 3 T13: 0.0296 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.6402 L22: 3.0657 REMARK 3 L33: 5.7383 L12: 0.6733 REMARK 3 L13: 1.9390 L23: 2.9554 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: 0.2391 S13: -0.0446 REMARK 3 S21: -0.3867 S22: 0.2435 S23: -0.2444 REMARK 3 S31: 0.0369 S32: 0.7879 S33: -0.1910 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : NCI REMARK 200 X-RAY GENERATOR MODEL : PAL-XFEL BEAMLINE NCI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.318066 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 27.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 67.58 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4930 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.25 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.578 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 2 UM X 2 UM X 80 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.85850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.66250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.85850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.66250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 56 CB CG CD OE1 NE2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 NE CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 309 O HOH A 501 2.11 REMARK 500 O HOH A 601 O HOH A 659 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -107.44 -88.01 REMARK 500 HIS A 82 58.79 -103.90 REMARK 500 LYS A 97 -46.37 -131.92 REMARK 500 LEU A 106 -166.92 -108.11 REMARK 500 THR A 123 -5.31 65.38 REMARK 500 ASN A 230 -28.00 -156.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 105.1 REMARK 620 3 HIS A 270 NE2 90.6 88.3 REMARK 620 4 ACV A 403 S17 88.8 82.0 169.8 REMARK 620 5 HOH A 540 O 167.7 85.1 96.6 85.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB DBREF 8PY5 A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 24 HET FE A 404 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE FE (III) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 FE FE 3+ FORMUL 6 HOH *178(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 404 1555 1555 2.10 LINK OD1 ASP A 216 FE FE A 404 1555 1555 2.07 LINK NE2 HIS A 270 FE FE A 404 1555 1555 2.28 LINK S17 ACV A 403 FE FE A 404 1555 1555 2.42 LINK FE FE A 404 O HOH A 540 1555 1555 2.28 CISPEP 1 ASP A 193 PRO A 194 0 0.15 CRYST1 41.681 75.325 101.717 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009831 0.00000