HEADER HYDROLASE 27-JUL-23 8Q06 TITLE EF-HAND OF MINDY3 DEUBIQUITYLASE IN COMPLEX WITH UBL OF RAD23A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.19.12; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: HR23A,HHR23A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MDA_GLEAN10008107; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 GENE: RAD23A; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DUB, DEUBIQUITYLASE, DEUBIQUITINASE, UBIQUITIN, MINDY, RAD23, RAD23A, KEYWDS 2 UBL, EF-HAND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.A.ARMSTRONG,Y.KULATHU REVDAT 1 12-FEB-25 8Q06 0 JRNL AUTH L.A.ARMSTRONG,Y.KULATHU JRNL TITL EF-HAND OF MINDY3 DEUBIQUITYLASE IN COMPLEX WITH UBL OF JRNL TITL 2 RAD23A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7800 - 4.2200 1.00 2883 125 0.1585 0.1918 REMARK 3 2 4.2200 - 3.3500 1.00 2852 151 0.1679 0.2310 REMARK 3 3 3.3500 - 2.9300 1.00 2825 150 0.2279 0.2661 REMARK 3 4 2.9300 - 2.6600 1.00 2834 118 0.2394 0.3292 REMARK 3 5 2.6600 - 2.4700 1.00 2864 158 0.2254 0.2703 REMARK 3 6 2.4700 - 2.3300 1.00 2805 161 0.2216 0.2654 REMARK 3 7 2.3300 - 2.2100 1.00 2840 113 0.2072 0.2616 REMARK 3 8 2.2100 - 2.1100 1.00 2832 140 0.2194 0.2568 REMARK 3 9 2.1100 - 2.0300 1.00 2823 148 0.2485 0.2975 REMARK 3 10 2.0300 - 1.9600 1.00 2781 169 0.2672 0.3163 REMARK 3 11 1.9600 - 1.9000 0.99 2767 160 0.3013 0.3391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2409 REMARK 3 ANGLE : 0.830 3254 REMARK 3 CHIRALITY : 0.050 373 REMARK 3 PLANARITY : 0.008 423 REMARK 3 DIHEDRAL : 6.587 314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8438 12.6922 11.6091 REMARK 3 T TENSOR REMARK 3 T11: 0.3803 T22: 0.3270 REMARK 3 T33: 0.4737 T12: -0.0442 REMARK 3 T13: -0.1333 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 6.5746 L22: 9.5386 REMARK 3 L33: 4.5933 L12: -0.2833 REMARK 3 L13: -0.2573 L23: -0.0083 REMARK 3 S TENSOR REMARK 3 S11: 0.2866 S12: 0.2125 S13: -0.7801 REMARK 3 S21: -0.4587 S22: -0.0531 S23: -0.0719 REMARK 3 S31: 0.5424 S32: -0.0046 S33: -0.2831 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6718 24.0316 14.5778 REMARK 3 T TENSOR REMARK 3 T11: 0.4128 T22: 0.3333 REMARK 3 T33: 0.3720 T12: -0.0378 REMARK 3 T13: -0.0155 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 4.3304 L22: 4.5255 REMARK 3 L33: 7.0618 L12: -1.5860 REMARK 3 L13: 1.0962 L23: -1.2364 REMARK 3 S TENSOR REMARK 3 S11: 0.2499 S12: 0.1130 S13: 0.2449 REMARK 3 S21: -0.0683 S22: -0.2886 S23: -0.4051 REMARK 3 S31: -0.1940 S32: 0.5417 S33: -0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2588 31.6939 14.1746 REMARK 3 T TENSOR REMARK 3 T11: 0.6577 T22: 0.3309 REMARK 3 T33: 0.3247 T12: -0.0295 REMARK 3 T13: 0.0913 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.9652 L22: 9.7594 REMARK 3 L33: 7.9027 L12: 5.8209 REMARK 3 L13: -0.8799 L23: -1.8606 REMARK 3 S TENSOR REMARK 3 S11: -0.1476 S12: -0.7827 S13: 0.2823 REMARK 3 S21: 0.6342 S22: -0.1499 S23: 0.3298 REMARK 3 S31: -0.8159 S32: 0.2275 S33: 0.2737 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9952 22.5962 12.9414 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.2749 REMARK 3 T33: 0.3526 T12: -0.0418 REMARK 3 T13: 0.0048 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 6.5913 L22: 7.2514 REMARK 3 L33: 8.5278 L12: -3.4175 REMARK 3 L13: -4.7747 L23: 3.1351 REMARK 3 S TENSOR REMARK 3 S11: 0.5934 S12: 0.2692 S13: -0.2459 REMARK 3 S21: -0.1706 S22: -0.4374 S23: 0.1962 REMARK 3 S31: -0.4354 S32: -0.5203 S33: -0.1960 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 296 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0362 23.6340 28.5458 REMARK 3 T TENSOR REMARK 3 T11: 0.5220 T22: 0.3824 REMARK 3 T33: 0.4265 T12: 0.0336 REMARK 3 T13: 0.0935 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 0.9663 L22: 3.5168 REMARK 3 L33: 3.9857 L12: 0.5993 REMARK 3 L13: 0.3328 L23: 3.8751 REMARK 3 S TENSOR REMARK 3 S11: -0.3068 S12: -0.0307 S13: -0.0216 REMARK 3 S21: -0.0154 S22: -0.3633 S23: 0.4435 REMARK 3 S31: -0.8730 S32: -0.3352 S33: 0.4802 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 316 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5884 14.6378 15.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 0.4174 REMARK 3 T33: 0.3958 T12: 0.0801 REMARK 3 T13: 0.0170 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 8.4676 L22: 6.1161 REMARK 3 L33: 7.3739 L12: 0.2681 REMARK 3 L13: 2.4171 L23: -0.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.2861 S12: 0.7145 S13: -0.0558 REMARK 3 S21: -0.2222 S22: -0.1322 S23: 0.0557 REMARK 3 S31: -0.0971 S32: -0.1542 S33: -0.0785 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 335 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8035 4.6874 23.7034 REMARK 3 T TENSOR REMARK 3 T11: 0.3848 T22: 0.3636 REMARK 3 T33: 0.4333 T12: 0.0185 REMARK 3 T13: -0.0463 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 7.1409 L22: 3.0910 REMARK 3 L33: 8.3758 L12: 0.4270 REMARK 3 L13: 0.5627 L23: -1.7746 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.1274 S13: -0.8225 REMARK 3 S21: -0.5877 S22: -0.0695 S23: -0.2108 REMARK 3 S31: 0.5246 S32: -0.0902 S33: -0.0488 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 352 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3572 12.7641 20.2962 REMARK 3 T TENSOR REMARK 3 T11: 0.3716 T22: 0.4190 REMARK 3 T33: 0.4121 T12: 0.0822 REMARK 3 T13: -0.0675 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 5.3289 L22: 5.5849 REMARK 3 L33: 8.2824 L12: -0.4539 REMARK 3 L13: 2.4147 L23: -2.5956 REMARK 3 S TENSOR REMARK 3 S11: 0.4132 S12: 0.1679 S13: -0.0274 REMARK 3 S21: -0.3887 S22: -0.1214 S23: 0.5127 REMARK 3 S31: 0.1814 S32: -0.6346 S33: -0.2494 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3042 1.2709 36.0800 REMARK 3 T TENSOR REMARK 3 T11: 0.5208 T22: 0.6549 REMARK 3 T33: 0.5691 T12: -0.0986 REMARK 3 T13: -0.0764 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: -0.0455 L22: 3.5745 REMARK 3 L33: 6.7778 L12: -0.0357 REMARK 3 L13: -0.0802 L23: 4.8117 REMARK 3 S TENSOR REMARK 3 S11: 0.3050 S12: 0.0925 S13: 0.3795 REMARK 3 S21: -0.7631 S22: -0.6626 S23: 0.1560 REMARK 3 S31: -0.3387 S32: -1.9439 S33: 0.5897 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0727 -4.8684 32.7352 REMARK 3 T TENSOR REMARK 3 T11: 0.6518 T22: 0.5409 REMARK 3 T33: 0.4168 T12: -0.1267 REMARK 3 T13: -0.0154 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 7.8144 L22: 2.6869 REMARK 3 L33: 2.2050 L12: 1.1715 REMARK 3 L13: 1.9320 L23: 0.3484 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.5347 S13: -0.3199 REMARK 3 S21: -0.6220 S22: -0.2129 S23: 0.2336 REMARK 3 S31: 0.9391 S32: -0.2098 S33: 0.4885 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 20 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7181 -5.5102 42.4908 REMARK 3 T TENSOR REMARK 3 T11: 0.4739 T22: 0.2883 REMARK 3 T33: 0.3390 T12: -0.0359 REMARK 3 T13: -0.0048 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 6.1654 L22: 6.9160 REMARK 3 L33: 6.3107 L12: 0.0708 REMARK 3 L13: 1.0272 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.4457 S13: -0.3530 REMARK 3 S21: 0.1719 S22: -0.2268 S23: -0.1524 REMARK 3 S31: 0.7625 S32: -0.3581 S33: 0.1373 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 43 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8436 -2.8640 37.5955 REMARK 3 T TENSOR REMARK 3 T11: 0.5349 T22: 0.4172 REMARK 3 T33: 0.4532 T12: 0.0493 REMARK 3 T13: 0.0451 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 8.2387 L22: 6.0807 REMARK 3 L33: 6.0442 L12: -0.9856 REMARK 3 L13: 0.2583 L23: -5.8777 REMARK 3 S TENSOR REMARK 3 S11: -0.1366 S12: 0.5998 S13: -0.0928 REMARK 3 S21: -1.5168 S22: 0.2414 S23: -0.3286 REMARK 3 S31: 1.3392 S32: 0.3761 S33: 0.1245 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0816 6.3779 39.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.3928 REMARK 3 T33: 0.4114 T12: -0.0876 REMARK 3 T13: -0.1142 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.5120 L22: 2.9332 REMARK 3 L33: 9.6221 L12: -1.3247 REMARK 3 L13: -0.9063 L23: -0.2807 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: -0.2016 S13: 0.3071 REMARK 3 S21: 0.1965 S22: -0.0470 S23: -0.4354 REMARK 3 S31: 0.0455 S32: 0.2035 S33: 0.0859 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 61 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9016 8.4647 36.7696 REMARK 3 T TENSOR REMARK 3 T11: 0.3889 T22: 0.4961 REMARK 3 T33: 0.4343 T12: 0.0871 REMARK 3 T13: -0.0572 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 7.8237 L22: 9.6457 REMARK 3 L33: 3.0567 L12: 2.7913 REMARK 3 L13: 3.9941 L23: 3.2044 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: -0.1175 S13: 0.4881 REMARK 3 S21: 0.3585 S22: -0.1771 S23: 0.4224 REMARK 3 S31: -0.2538 S32: -1.2344 S33: 0.4758 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8507 -3.2637 32.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.6273 T22: 0.3205 REMARK 3 T33: 0.4302 T12: -0.0964 REMARK 3 T13: 0.0004 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 7.0424 L22: 3.7437 REMARK 3 L33: 4.7397 L12: -5.0848 REMARK 3 L13: 1.9291 L23: -1.9054 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.1345 S13: 0.5426 REMARK 3 S21: -0.5772 S22: 0.0216 S23: -0.6586 REMARK 3 S31: 0.6978 S32: -0.1161 S33: -0.2520 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3499 37.0111 40.8554 REMARK 3 T TENSOR REMARK 3 T11: 0.5422 T22: 0.4844 REMARK 3 T33: 0.7157 T12: 0.1382 REMARK 3 T13: -0.0822 T23: 0.0696 REMARK 3 L TENSOR REMARK 3 L11: 8.7904 L22: 2.7375 REMARK 3 L33: 3.4113 L12: 0.5990 REMARK 3 L13: 5.2050 L23: 0.2939 REMARK 3 S TENSOR REMARK 3 S11: 0.2743 S12: -0.0348 S13: 0.3470 REMARK 3 S21: 0.1063 S22: -0.1285 S23: 1.3553 REMARK 3 S31: 0.1590 S32: -1.3708 S33: -0.0807 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 10 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5178 40.8142 44.7946 REMARK 3 T TENSOR REMARK 3 T11: 0.9924 T22: 0.4319 REMARK 3 T33: 0.5405 T12: 0.0853 REMARK 3 T13: -0.0124 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.2309 L22: 2.5166 REMARK 3 L33: 9.3951 L12: -0.4356 REMARK 3 L13: -0.7986 L23: -2.9429 REMARK 3 S TENSOR REMARK 3 S11: -0.6511 S12: 0.4459 S13: 0.2237 REMARK 3 S21: 0.3122 S22: 0.0212 S23: 0.7307 REMARK 3 S31: -0.7526 S32: -0.5839 S33: 0.7224 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 20 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1018 44.8572 37.4243 REMARK 3 T TENSOR REMARK 3 T11: 0.8160 T22: 0.3610 REMARK 3 T33: 0.4663 T12: 0.0364 REMARK 3 T13: -0.0205 T23: 0.0994 REMARK 3 L TENSOR REMARK 3 L11: 3.5163 L22: 9.8991 REMARK 3 L33: 6.8958 L12: -1.0227 REMARK 3 L13: -1.4571 L23: 1.2541 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: 0.2332 S13: 0.3974 REMARK 3 S21: -0.5834 S22: -0.1710 S23: -0.4052 REMARK 3 S31: -0.1844 S32: -0.2757 S33: 0.1037 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 42 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7426 34.0697 39.7038 REMARK 3 T TENSOR REMARK 3 T11: 0.5919 T22: 0.3026 REMARK 3 T33: 0.3488 T12: 0.0232 REMARK 3 T13: 0.1006 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 3.9750 L22: 4.4875 REMARK 3 L33: 6.9458 L12: -1.7823 REMARK 3 L13: 1.0051 L23: 1.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.1196 S12: 0.2246 S13: -0.3804 REMARK 3 S21: -0.2257 S22: -0.0626 S23: 0.1916 REMARK 3 S31: 0.1678 S32: -0.0983 S33: 0.2049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05579 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64220 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 2.2 M REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.06950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 291 REMARK 465 PRO A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 MET A 296 REMARK 465 ALA A 297 REMARK 465 LEU A 298 REMARK 465 VAL A 299 REMARK 465 ALA A 300 REMARK 465 PRO A 301 REMARK 465 GLY B 291 REMARK 465 PRO B 292 REMARK 465 LEU B 293 REMARK 465 GLY B 294 REMARK 465 SER B 295 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 LEU C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 LYS C 78 REMARK 465 THR C 79 REMARK 465 LYS C 80 REMARK 465 ALA C 81 REMARK 465 GLY C 82 REMARK 465 GLN C 83 REMARK 465 GLY C 84 REMARK 465 GLY D -4 REMARK 465 PRO D -3 REMARK 465 LEU D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 THR D 77 REMARK 465 LYS D 78 REMARK 465 THR D 79 REMARK 465 LYS D 80 REMARK 465 ALA D 81 REMARK 465 GLY D 82 REMARK 465 GLN D 83 REMARK 465 GLY D 84 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG C 38 OE1 GLU D 35 2747 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 316 62.66 -119.25 REMARK 500 PHE B 369 57.11 -143.72 REMARK 500 GLN C 12 56.64 72.70 REMARK 500 ASN C 70 -166.51 -101.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 8Q06 A 296 370 UNP L5MDV7 L5MDV7_MYODS 314 388 DBREF 8Q06 B 296 370 UNP L5MDV7 L5MDV7_MYODS 314 388 DBREF 8Q06 C 1 84 UNP P54725 RD23A_HUMAN 1 84 DBREF 8Q06 D 1 84 UNP P54725 RD23A_HUMAN 1 84 SEQADV 8Q06 GLY A 291 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 PRO A 292 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 LEU A 293 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 GLY A 294 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 SER A 295 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 GLY B 291 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 PRO B 292 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 LEU B 293 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 GLY B 294 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 SER B 295 UNP L5MDV7 EXPRESSION TAG SEQADV 8Q06 GLY C -4 UNP P54725 EXPRESSION TAG SEQADV 8Q06 PRO C -3 UNP P54725 EXPRESSION TAG SEQADV 8Q06 LEU C -2 UNP P54725 EXPRESSION TAG SEQADV 8Q06 GLY C -1 UNP P54725 EXPRESSION TAG SEQADV 8Q06 SER C 0 UNP P54725 EXPRESSION TAG SEQADV 8Q06 GLY D -4 UNP P54725 EXPRESSION TAG SEQADV 8Q06 PRO D -3 UNP P54725 EXPRESSION TAG SEQADV 8Q06 LEU D -2 UNP P54725 EXPRESSION TAG SEQADV 8Q06 GLY D -1 UNP P54725 EXPRESSION TAG SEQADV 8Q06 SER D 0 UNP P54725 EXPRESSION TAG SEQRES 1 A 80 GLY PRO LEU GLY SER MET ALA LEU VAL ALA PRO GLU ALA SEQRES 2 A 80 PRO SER GLU GLN ALA ARG ARG VAL PHE GLN THR TYR ASP SEQRES 3 A 80 PRO GLU ASP ASN GLY PHE ILE PRO ASP SER LEU LEU GLU SEQRES 4 A 80 ASP VAL MET LYS ALA LEU ASP LEU VAL SER ASP PRO GLU SEQRES 5 A 80 TYR ILE ASN LEU MET LYS ASN LYS LEU ASP PRO GLU GLY SEQRES 6 A 80 LEU GLY ILE ILE LEU LEU GLY PRO PHE LEU GLN GLU PHE SEQRES 7 A 80 PHE PRO SEQRES 1 B 80 GLY PRO LEU GLY SER MET ALA LEU VAL ALA PRO GLU ALA SEQRES 2 B 80 PRO SER GLU GLN ALA ARG ARG VAL PHE GLN THR TYR ASP SEQRES 3 B 80 PRO GLU ASP ASN GLY PHE ILE PRO ASP SER LEU LEU GLU SEQRES 4 B 80 ASP VAL MET LYS ALA LEU ASP LEU VAL SER ASP PRO GLU SEQRES 5 B 80 TYR ILE ASN LEU MET LYS ASN LYS LEU ASP PRO GLU GLY SEQRES 6 B 80 LEU GLY ILE ILE LEU LEU GLY PRO PHE LEU GLN GLU PHE SEQRES 7 B 80 PHE PRO SEQRES 1 C 89 GLY PRO LEU GLY SER MET ALA VAL THR ILE THR LEU LYS SEQRES 2 C 89 THR LEU GLN GLN GLN THR PHE LYS ILE ARG MET GLU PRO SEQRES 3 C 89 ASP GLU THR VAL LYS VAL LEU LYS GLU LYS ILE GLU ALA SEQRES 4 C 89 GLU LYS GLY ARG ASP ALA PHE PRO VAL ALA GLY GLN LYS SEQRES 5 C 89 LEU ILE TYR ALA GLY LYS ILE LEU SER ASP ASP VAL PRO SEQRES 6 C 89 ILE ARG ASP TYR ARG ILE ASP GLU LYS ASN PHE VAL VAL SEQRES 7 C 89 VAL MET VAL THR LYS THR LYS ALA GLY GLN GLY SEQRES 1 D 89 GLY PRO LEU GLY SER MET ALA VAL THR ILE THR LEU LYS SEQRES 2 D 89 THR LEU GLN GLN GLN THR PHE LYS ILE ARG MET GLU PRO SEQRES 3 D 89 ASP GLU THR VAL LYS VAL LEU LYS GLU LYS ILE GLU ALA SEQRES 4 D 89 GLU LYS GLY ARG ASP ALA PHE PRO VAL ALA GLY GLN LYS SEQRES 5 D 89 LEU ILE TYR ALA GLY LYS ILE LEU SER ASP ASP VAL PRO SEQRES 6 D 89 ILE ARG ASP TYR ARG ILE ASP GLU LYS ASN PHE VAL VAL SEQRES 7 D 89 VAL MET VAL THR LYS THR LYS ALA GLY GLN GLY HET GOL B 401 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *159(H2 O) HELIX 1 AA1 ALA A 303 ASP A 316 1 14 HELIX 2 AA2 LEU A 327 LEU A 335 1 9 HELIX 3 AA3 ASP A 340 ASP A 352 1 13 HELIX 4 AA4 LEU A 361 PHE A 369 1 9 HELIX 5 AA5 ALA B 303 ASP B 316 1 14 HELIX 6 AA6 LEU B 327 LEU B 335 1 9 HELIX 7 AA7 ASP B 340 ASP B 352 1 13 HELIX 8 AA8 LEU B 361 PHE B 369 1 9 HELIX 9 AA9 THR C 24 GLY C 37 1 14 HELIX 10 AB1 PRO C 42 ALA C 44 5 3 HELIX 11 AB2 PRO C 60 ARG C 65 5 6 HELIX 12 AB3 THR D 24 GLY D 37 1 14 HELIX 13 AB4 PRO D 42 GLN D 46 5 5 HELIX 14 AB5 PRO D 60 ARG D 65 5 6 SHEET 1 AA1 2 PHE A 322 PRO A 324 0 SHEET 2 AA1 2 ILE A 358 LEU A 360 -1 O ILE A 359 N ILE A 323 SHEET 1 AA2 2 PHE B 322 PRO B 324 0 SHEET 2 AA2 2 ILE B 358 LEU B 360 -1 O ILE B 359 N ILE B 323 SHEET 1 AA3 5 GLN C 13 MET C 19 0 SHEET 2 AA3 5 VAL C 3 THR C 9 -1 N LEU C 7 O PHE C 15 SHEET 3 AA3 5 VAL C 72 VAL C 76 1 O VAL C 72 N THR C 6 SHEET 4 AA3 5 GLN C 46 TYR C 50 -1 N LYS C 47 O MET C 75 SHEET 5 AA3 5 LYS C 53 ILE C 54 -1 O LYS C 53 N TYR C 50 SHEET 1 AA4 5 THR D 14 MET D 19 0 SHEET 2 AA4 5 VAL D 3 LYS D 8 -1 N LEU D 7 O PHE D 15 SHEET 3 AA4 5 VAL D 72 MET D 75 1 O VAL D 72 N THR D 6 SHEET 4 AA4 5 LYS D 47 TYR D 50 -1 N ILE D 49 O VAL D 73 SHEET 5 AA4 5 LYS D 53 ILE D 54 -1 O LYS D 53 N TYR D 50 CRYST1 38.279 134.139 45.498 90.00 114.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026124 0.000000 0.011999 0.00000 SCALE2 0.000000 0.007455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024187 0.00000 CONECT 4643 4644 4645 4649 4650 CONECT 4644 4643 4651 CONECT 4645 4643 4646 4647 4652 CONECT 4646 4645 4653 CONECT 4647 4645 4648 4654 4655 CONECT 4648 4647 4656 CONECT 4649 4643 CONECT 4650 4643 CONECT 4651 4644 CONECT 4652 4645 CONECT 4653 4646 CONECT 4654 4647 CONECT 4655 4647 CONECT 4656 4648 MASTER 566 0 1 14 14 0 0 6 2528 4 14 28 END