HEADER DNA BINDING PROTEIN 30-JUL-23 8Q15 TITLE CRYOEM STRUCTURE OF CANONICAL RICE NUCLEOSOME CORE PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H2A.2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H2A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H2B.4; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: H2B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HISTONE H3.2; COMPND 13 CHAIN: E, F; COMPND 14 SYNONYM: H3; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: HISTONE H4; COMPND 18 CHAIN: G, H; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: WIDOM 601; COMPND 22 CHAIN: I; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 6; COMPND 25 MOLECULE: WIDOM 601; COMPND 26 CHAIN: J; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA; SOURCE 3 ORGANISM_TAXID: 4527; SOURCE 4 GENE: OSI_025469; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ORYZA; SOURCE 9 ORGANISM_TAXID: 4527; SOURCE 10 GENE: H2B.4, OSI_000388; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ORYZA; SOURCE 15 ORGANISM_TAXID: 4527; SOURCE 16 GENE: OSI_019426, OSI_021009, OSI_021012, OSI_033964; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: ORYZA; SOURCE 21 ORGANISM_TAXID: 4527; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 5; SOURCE 25 SYNTHETIC: YES; SOURCE 26 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 27 ORGANISM_TAXID: 32630; SOURCE 28 MOL_ID: 6; SOURCE 29 SYNTHETIC: YES; SOURCE 30 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 31 ORGANISM_TAXID: 32630 KEYWDS HISTONE, NUCLEOSOME CORE PARTICLE, RICE NUCLEOSOME, CHROMATIN, DNA KEYWDS 2 BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR P.SOTELO-PARRILLA,V.HARI SUNDAR G,S.RAJU,S.JHA,A.GIREESH,F.GUT, AUTHOR 2 K.R.VINOTHKUMAR,F.BERGER,P.V.SHIVAPRASAD,A.A.JEYAPRAKASH REVDAT 1 05-FEB-25 8Q15 0 JRNL AUTH V.HARI SUNDAR G,P.SOTELO-PARRILLA,S.RAJU,S.JHA,A.GIREESH, JRNL AUTH 2 F.GUT,K.R.VINOTHKUMAR,F.BERGER,A.A.JEYAPRAKASH, JRNL AUTH 3 P.V.SHIVAPRASAD JRNL TITL ORYZA GENERA-SPECIFIC NOVEL HISTONE H4 VARIANT PREDISPOSES JRNL TITL 2 H4 LYSINE5 ACETYLATION MARKS TO MODULATE SALT STRESS JRNL TITL 3 RESPONSES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 140877 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8Q15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292132333. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RICE CANONICAL NUCLEOSOME CORE REMARK 245 PARTICLE WITH WIDOM 601 DNA REMARK 245 SEQUENCE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : TFS FALCON 4I (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ILE A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 MET A 17 REMARK 465 SER A 18 REMARK 465 ARG A 19 REMARK 465 ILE A 104 REMARK 465 ALA A 105 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 VAL A 109 REMARK 465 MET A 110 REMARK 465 PRO A 111 REMARK 465 ASN A 112 REMARK 465 ILE A 113 REMARK 465 HIS A 114 REMARK 465 ASN A 115 REMARK 465 LEU A 116 REMARK 465 LEU A 117 REMARK 465 LEU A 118 REMARK 465 PRO A 119 REMARK 465 LYS A 120 REMARK 465 LYS A 121 REMARK 465 ALA A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 ALA A 126 REMARK 465 LYS A 127 REMARK 465 ALA A 128 REMARK 465 ALA A 129 REMARK 465 ALA A 130 REMARK 465 GLY A 131 REMARK 465 ASP A 132 REMARK 465 ASP A 133 REMARK 465 ASP A 134 REMARK 465 ASN A 135 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 ILE B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 ALA B 16 REMARK 465 MET B 17 REMARK 465 SER B 18 REMARK 465 ARG B 19 REMARK 465 ILE B 104 REMARK 465 ALA B 105 REMARK 465 SER B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 108 REMARK 465 VAL B 109 REMARK 465 MET B 110 REMARK 465 PRO B 111 REMARK 465 ASN B 112 REMARK 465 ILE B 113 REMARK 465 HIS B 114 REMARK 465 ASN B 115 REMARK 465 LEU B 116 REMARK 465 LEU B 117 REMARK 465 LEU B 118 REMARK 465 PRO B 119 REMARK 465 LYS B 120 REMARK 465 LYS B 121 REMARK 465 ALA B 122 REMARK 465 GLY B 123 REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 ALA B 126 REMARK 465 LYS B 127 REMARK 465 ALA B 128 REMARK 465 ALA B 129 REMARK 465 ALA B 130 REMARK 465 GLY B 131 REMARK 465 ASP B 132 REMARK 465 ASP B 133 REMARK 465 ASP B 134 REMARK 465 ASN B 135 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PRO C 3 REMARK 465 LYS C 4 REMARK 465 ALA C 5 REMARK 465 GLU C 6 REMARK 465 LYS C 7 REMARK 465 LYS C 8 REMARK 465 PRO C 9 REMARK 465 ALA C 10 REMARK 465 ALA C 11 REMARK 465 LYS C 12 REMARK 465 LYS C 13 REMARK 465 PRO C 14 REMARK 465 ALA C 15 REMARK 465 GLU C 16 REMARK 465 GLU C 17 REMARK 465 GLU C 18 REMARK 465 PRO C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 GLU C 22 REMARK 465 LYS C 23 REMARK 465 ALA C 24 REMARK 465 GLU C 25 REMARK 465 LYS C 26 REMARK 465 ALA C 27 REMARK 465 PRO C 28 REMARK 465 ALA C 29 REMARK 465 GLY C 30 REMARK 465 LYS C 31 REMARK 465 LYS C 32 REMARK 465 PRO C 33 REMARK 465 LYS C 34 REMARK 465 ALA C 35 REMARK 465 GLU C 36 REMARK 465 LYS C 37 REMARK 465 ARG C 38 REMARK 465 LEU C 39 REMARK 465 PRO C 40 REMARK 465 ALA C 41 REMARK 465 GLY C 42 REMARK 465 LYS C 43 REMARK 465 ALA C 44 REMARK 465 GLU C 45 REMARK 465 LYS C 46 REMARK 465 GLY C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 GLU C 50 REMARK 465 GLY C 51 REMARK 465 LYS C 52 REMARK 465 LYS C 53 REMARK 465 ALA C 54 REMARK 465 GLY C 55 REMARK 465 ARG C 56 REMARK 465 LYS C 57 REMARK 465 LYS C 58 REMARK 465 ALA C 59 REMARK 465 LYS C 60 REMARK 465 LYS C 61 REMARK 465 SER C 62 REMARK 465 VAL C 63 REMARK 465 GLU C 64 REMARK 465 ALA C 153 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 PRO D 3 REMARK 465 LYS D 4 REMARK 465 ALA D 5 REMARK 465 GLU D 6 REMARK 465 LYS D 7 REMARK 465 LYS D 8 REMARK 465 PRO D 9 REMARK 465 ALA D 10 REMARK 465 ALA D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 PRO D 14 REMARK 465 ALA D 15 REMARK 465 GLU D 16 REMARK 465 GLU D 17 REMARK 465 GLU D 18 REMARK 465 PRO D 19 REMARK 465 ALA D 20 REMARK 465 ALA D 21 REMARK 465 GLU D 22 REMARK 465 LYS D 23 REMARK 465 ALA D 24 REMARK 465 GLU D 25 REMARK 465 LYS D 26 REMARK 465 ALA D 27 REMARK 465 PRO D 28 REMARK 465 ALA D 29 REMARK 465 GLY D 30 REMARK 465 LYS D 31 REMARK 465 LYS D 32 REMARK 465 PRO D 33 REMARK 465 LYS D 34 REMARK 465 ALA D 35 REMARK 465 GLU D 36 REMARK 465 LYS D 37 REMARK 465 ARG D 38 REMARK 465 LEU D 39 REMARK 465 PRO D 40 REMARK 465 ALA D 41 REMARK 465 GLY D 42 REMARK 465 LYS D 43 REMARK 465 ALA D 44 REMARK 465 GLU D 45 REMARK 465 LYS D 46 REMARK 465 GLY D 47 REMARK 465 SER D 48 REMARK 465 GLY D 49 REMARK 465 GLU D 50 REMARK 465 GLY D 51 REMARK 465 LYS D 52 REMARK 465 LYS D 53 REMARK 465 ALA D 54 REMARK 465 GLY D 55 REMARK 465 ARG D 56 REMARK 465 LYS D 57 REMARK 465 LYS D 58 REMARK 465 ALA D 59 REMARK 465 LYS D 60 REMARK 465 LYS D 61 REMARK 465 SER D 62 REMARK 465 VAL D 63 REMARK 465 GLU D 64 REMARK 465 ALA D 153 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ARG E 3 REMARK 465 THR E 4 REMARK 465 LYS E 5 REMARK 465 GLN E 6 REMARK 465 THR E 7 REMARK 465 ALA E 8 REMARK 465 ARG E 9 REMARK 465 LYS E 10 REMARK 465 SER E 11 REMARK 465 THR E 12 REMARK 465 GLY E 13 REMARK 465 GLY E 14 REMARK 465 LYS E 15 REMARK 465 ALA E 16 REMARK 465 PRO E 17 REMARK 465 ARG E 18 REMARK 465 LYS E 19 REMARK 465 GLN E 20 REMARK 465 LEU E 21 REMARK 465 ALA E 22 REMARK 465 THR E 23 REMARK 465 LYS E 24 REMARK 465 ALA E 25 REMARK 465 ALA E 26 REMARK 465 ARG E 27 REMARK 465 LYS E 28 REMARK 465 SER E 29 REMARK 465 ALA E 30 REMARK 465 PRO E 31 REMARK 465 ALA E 32 REMARK 465 THR E 33 REMARK 465 GLY E 34 REMARK 465 GLY E 35 REMARK 465 VAL E 36 REMARK 465 LYS E 37 REMARK 465 LYS E 38 REMARK 465 PRO E 39 REMARK 465 HIS E 40 REMARK 465 ARG E 41 REMARK 465 PHE E 42 REMARK 465 ARG E 43 REMARK 465 PRO E 44 REMARK 465 GLY E 45 REMARK 465 THR E 46 REMARK 465 VAL E 47 REMARK 465 ALA E 48 REMARK 465 LEU E 49 REMARK 465 ARG E 50 REMARK 465 GLU E 51 REMARK 465 ILE E 52 REMARK 465 ARG E 53 REMARK 465 LYS E 54 REMARK 465 TYR E 55 REMARK 465 GLN E 56 REMARK 465 LYS E 57 REMARK 465 SER E 58 REMARK 465 THR E 59 REMARK 465 GLU E 60 REMARK 465 LEU E 61 REMARK 465 LEU E 62 REMARK 465 ALA E 136 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 ARG F 3 REMARK 465 THR F 4 REMARK 465 LYS F 5 REMARK 465 GLN F 6 REMARK 465 THR F 7 REMARK 465 ALA F 8 REMARK 465 ARG F 9 REMARK 465 LYS F 10 REMARK 465 SER F 11 REMARK 465 THR F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 LYS F 15 REMARK 465 ALA F 16 REMARK 465 PRO F 17 REMARK 465 ARG F 18 REMARK 465 LYS F 19 REMARK 465 GLN F 20 REMARK 465 LEU F 21 REMARK 465 ALA F 22 REMARK 465 THR F 23 REMARK 465 LYS F 24 REMARK 465 ALA F 25 REMARK 465 ALA F 26 REMARK 465 ARG F 27 REMARK 465 LYS F 28 REMARK 465 SER F 29 REMARK 465 ALA F 30 REMARK 465 PRO F 31 REMARK 465 ALA F 32 REMARK 465 THR F 33 REMARK 465 GLY F 34 REMARK 465 GLY F 35 REMARK 465 VAL F 36 REMARK 465 LYS F 37 REMARK 465 ARG F 135 REMARK 465 ALA F 136 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 GLY G 3 REMARK 465 ARG G 4 REMARK 465 GLY G 5 REMARK 465 LYS G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 GLY G 10 REMARK 465 LEU G 11 REMARK 465 GLY G 12 REMARK 465 LYS G 13 REMARK 465 GLY G 14 REMARK 465 GLY G 15 REMARK 465 ALA G 16 REMARK 465 LYS G 17 REMARK 465 ARG G 18 REMARK 465 HIS G 19 REMARK 465 ARG G 20 REMARK 465 LYS G 21 REMARK 465 VAL G 22 REMARK 465 LEU G 23 REMARK 465 ARG G 24 REMARK 465 MET H 1 REMARK 465 SER H 2 REMARK 465 GLY H 3 REMARK 465 ARG H 4 REMARK 465 GLY H 5 REMARK 465 LYS H 6 REMARK 465 GLY H 7 REMARK 465 GLY H 8 REMARK 465 LYS H 9 REMARK 465 GLY H 10 REMARK 465 LEU H 11 REMARK 465 GLY H 12 REMARK 465 LYS H 13 REMARK 465 GLY H 14 REMARK 465 GLY H 15 REMARK 465 ALA H 16 REMARK 465 LYS H 17 REMARK 465 ARG H 18 REMARK 465 HIS H 19 REMARK 465 ARG H 20 REMARK 465 LYS H 21 REMARK 465 VAL H 22 REMARK 465 LEU H 23 REMARK 465 ARG H 24 REMARK 465 ASP H 25 REMARK 465 DC I -72 REMARK 465 DA I -71 REMARK 465 DG I -70 REMARK 465 DG I -69 REMARK 465 DA I -68 REMARK 465 DT I -67 REMARK 465 DG I -66 REMARK 465 DT I -65 REMARK 465 DA I -64 REMARK 465 DT I -63 REMARK 465 DA I -62 REMARK 465 DT I -61 REMARK 465 DA I -60 REMARK 465 DT I -59 REMARK 465 DG I -58 REMARK 465 DT I -57 REMARK 465 DG I -56 REMARK 465 DA I -55 REMARK 465 DC I -54 REMARK 465 DA I -53 REMARK 465 DC I -52 REMARK 465 DG I -51 REMARK 465 DT I -50 REMARK 465 DG I -49 REMARK 465 DC I -48 REMARK 465 DC I -47 REMARK 465 DG I 73 REMARK 465 DC J -73 REMARK 465 DG J 47 REMARK 465 DG J 48 REMARK 465 DC J 49 REMARK 465 DA J 50 REMARK 465 DC J 51 REMARK 465 DG J 52 REMARK 465 DT J 53 REMARK 465 DG J 54 REMARK 465 DT J 55 REMARK 465 DC J 56 REMARK 465 DA J 57 REMARK 465 DC J 58 REMARK 465 DA J 59 REMARK 465 DT J 60 REMARK 465 DA J 61 REMARK 465 DT J 62 REMARK 465 DA J 63 REMARK 465 DT J 64 REMARK 465 DA J 65 REMARK 465 DC J 66 REMARK 465 DA J 67 REMARK 465 DT J 68 REMARK 465 DC J 69 REMARK 465 DC J 70 REMARK 465 DT J 71 REMARK 465 DG J 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 DG I -10 O2 DC J 10 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC I -27 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC I -2 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC J -20 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC J 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 25 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 82 62.25 60.72 REMARK 500 PHE H 101 21.58 -140.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-18060 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF CANONICAL RICE NUCLEOSOME CORE PARTICLE DBREF 8Q15 A 1 135 UNP A2YMC6 H2A2_ORYSI 1 135 DBREF 8Q15 B 1 135 UNP A2YMC6 H2A2_ORYSI 1 135 DBREF 8Q15 C 1 153 UNP A2WKP5 H2B4_ORYSI 1 153 DBREF 8Q15 D 1 153 UNP A2WKP5 H2B4_ORYSI 1 153 DBREF 8Q15 E 1 136 UNP A2Y533 H32_ORYSI 1 136 DBREF 8Q15 F 1 136 UNP A2Y533 H32_ORYSI 1 136 DBREF 8Q15 G 1 103 PDB 8Q15 8Q15 1 103 DBREF 8Q15 H 1 103 PDB 8Q15 8Q15 1 103 DBREF 8Q15 I -72 73 PDB 8Q15 8Q15 -72 73 DBREF 8Q15 J -73 72 PDB 8Q15 8Q15 -73 72 SEQRES 1 A 135 MET ALA GLY ARG GLY LYS ALA ILE GLY SER GLY ALA ALA SEQRES 2 A 135 LYS LYS ALA MET SER ARG SER SER LYS ALA GLY LEU GLN SEQRES 3 A 135 PHE PRO VAL GLY ARG ILE ALA ARG PHE LEU LYS ALA GLY SEQRES 4 A 135 LYS TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR SEQRES 5 A 135 LEU ALA ALA VAL LEU GLU TYR LEU ALA ALA GLU VAL LEU SEQRES 6 A 135 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 7 A 135 ARG ILE VAL PRO ARG HIS ILE GLN LEU ALA VAL ARG ASN SEQRES 8 A 135 ASP GLU GLU LEU SER ARG LEU LEU GLY THR VAL THR ILE SEQRES 9 A 135 ALA SER GLY GLY VAL MET PRO ASN ILE HIS ASN LEU LEU SEQRES 10 A 135 LEU PRO LYS LYS ALA GLY GLY SER ALA LYS ALA ALA ALA SEQRES 11 A 135 GLY ASP ASP ASP ASN SEQRES 1 B 135 MET ALA GLY ARG GLY LYS ALA ILE GLY SER GLY ALA ALA SEQRES 2 B 135 LYS LYS ALA MET SER ARG SER SER LYS ALA GLY LEU GLN SEQRES 3 B 135 PHE PRO VAL GLY ARG ILE ALA ARG PHE LEU LYS ALA GLY SEQRES 4 B 135 LYS TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR SEQRES 5 B 135 LEU ALA ALA VAL LEU GLU TYR LEU ALA ALA GLU VAL LEU SEQRES 6 B 135 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 7 B 135 ARG ILE VAL PRO ARG HIS ILE GLN LEU ALA VAL ARG ASN SEQRES 8 B 135 ASP GLU GLU LEU SER ARG LEU LEU GLY THR VAL THR ILE SEQRES 9 B 135 ALA SER GLY GLY VAL MET PRO ASN ILE HIS ASN LEU LEU SEQRES 10 B 135 LEU PRO LYS LYS ALA GLY GLY SER ALA LYS ALA ALA ALA SEQRES 11 B 135 GLY ASP ASP ASP ASN SEQRES 1 C 153 MET ALA PRO LYS ALA GLU LYS LYS PRO ALA ALA LYS LYS SEQRES 2 C 153 PRO ALA GLU GLU GLU PRO ALA ALA GLU LYS ALA GLU LYS SEQRES 3 C 153 ALA PRO ALA GLY LYS LYS PRO LYS ALA GLU LYS ARG LEU SEQRES 4 C 153 PRO ALA GLY LYS ALA GLU LYS GLY SER GLY GLU GLY LYS SEQRES 5 C 153 LYS ALA GLY ARG LYS LYS ALA LYS LYS SER VAL GLU THR SEQRES 6 C 153 TYR LYS ILE TYR ILE PHE LYS VAL LEU LYS GLN VAL HIS SEQRES 7 C 153 PRO ASP ILE GLY ILE SER SER LYS ALA MET SER ILE MET SEQRES 8 C 153 ASN SER PHE ILE ASN ASP ILE PHE GLU LYS LEU ALA GLY SEQRES 9 C 153 GLU SER ALA LYS LEU ALA ARG TYR ASN LYS LYS PRO THR SEQRES 10 C 153 ILE THR SER ARG GLU ILE GLN THR SER VAL ARG LEU VAL SEQRES 11 C 153 LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY SEQRES 12 C 153 THR LYS ALA VAL THR LYS PHE THR SER ALA SEQRES 1 D 153 MET ALA PRO LYS ALA GLU LYS LYS PRO ALA ALA LYS LYS SEQRES 2 D 153 PRO ALA GLU GLU GLU PRO ALA ALA GLU LYS ALA GLU LYS SEQRES 3 D 153 ALA PRO ALA GLY LYS LYS PRO LYS ALA GLU LYS ARG LEU SEQRES 4 D 153 PRO ALA GLY LYS ALA GLU LYS GLY SER GLY GLU GLY LYS SEQRES 5 D 153 LYS ALA GLY ARG LYS LYS ALA LYS LYS SER VAL GLU THR SEQRES 6 D 153 TYR LYS ILE TYR ILE PHE LYS VAL LEU LYS GLN VAL HIS SEQRES 7 D 153 PRO ASP ILE GLY ILE SER SER LYS ALA MET SER ILE MET SEQRES 8 D 153 ASN SER PHE ILE ASN ASP ILE PHE GLU LYS LEU ALA GLY SEQRES 9 D 153 GLU SER ALA LYS LEU ALA ARG TYR ASN LYS LYS PRO THR SEQRES 10 D 153 ILE THR SER ARG GLU ILE GLN THR SER VAL ARG LEU VAL SEQRES 11 D 153 LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY SEQRES 12 D 153 THR LYS ALA VAL THR LYS PHE THR SER ALA SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG PHE ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG LYS TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL ALA SEQRES 8 E 136 ALA LEU GLN GLU ALA ALA GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 F 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 F 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 F 136 HIS ARG PHE ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 F 136 ARG LYS TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 F 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 F 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL ALA SEQRES 8 F 136 ALA LEU GLN GLU ALA ALA GLU ALA TYR LEU VAL GLY LEU SEQRES 9 F 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 F 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 F 136 ILE ARG GLY GLU ARG ALA SEQRES 1 G 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 G 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 G 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 G 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 G 103 GLU GLU THR ARG GLY VAL LEU LYS ILE PHE LEU GLU ASN SEQRES 6 G 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA ARG SEQRES 7 G 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 G 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 H 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 H 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 H 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 H 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 H 103 GLU GLU THR ARG GLY VAL LEU LYS ILE PHE LEU GLU ASN SEQRES 6 H 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA ARG SEQRES 7 H 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 H 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 I 146 DC DA DG DG DA DT DG DT DA DT DA DT DA SEQRES 2 I 146 DT DG DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 I 146 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 I 146 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 I 146 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 I 146 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 I 146 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 I 146 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 I 146 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 I 146 DT DG DA DG DC DG DG DC DC DT DC DG DG SEQRES 11 I 146 DC DA DC DC DG DG DG DA DT DT DC DT DC SEQRES 12 I 146 DC DA DG SEQRES 1 J 146 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 2 J 146 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 J 146 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 J 146 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 J 146 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 J 146 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 J 146 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 J 146 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 J 146 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 J 146 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 J 146 DA DC DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 J 146 DC DT DG HELIX 1 AA1 PRO A 28 GLY A 39 1 12 HELIX 2 AA2 GLY A 48 ASN A 75 1 28 HELIX 3 AA3 VAL A 81 ASP A 92 1 12 HELIX 4 AA4 ASP A 92 LEU A 99 1 8 HELIX 5 AA5 PRO B 28 GLY B 39 1 12 HELIX 6 AA6 ALA B 47 ASN B 75 1 29 HELIX 7 AA7 VAL B 81 ASP B 92 1 12 HELIX 8 AA8 ASP B 92 LEU B 99 1 8 HELIX 9 AA9 TYR C 66 HIS C 78 1 13 HELIX 10 AB1 SER C 84 LYS C 114 1 31 HELIX 11 AB2 THR C 119 LEU C 131 1 13 HELIX 12 AB3 PRO C 132 SER C 152 1 21 HELIX 13 AB4 TYR D 66 HIS D 78 1 13 HELIX 14 AB5 SER D 84 LYS D 114 1 31 HELIX 15 AB6 THR D 119 LEU D 131 1 13 HELIX 16 AB7 GLY D 133 SER D 152 1 20 HELIX 17 AB8 ARG E 64 LYS E 80 1 17 HELIX 18 AB9 GLN E 86 ALA E 115 1 30 HELIX 19 AC1 MET E 121 GLY E 133 1 13 HELIX 20 AC2 GLY F 45 SER F 58 1 14 HELIX 21 AC3 ARG F 64 LYS F 80 1 17 HELIX 22 AC4 GLN F 86 ALA F 115 1 30 HELIX 23 AC5 MET F 121 GLY F 133 1 13 HELIX 24 AC6 ASN G 26 ILE G 30 5 5 HELIX 25 AC7 THR G 31 GLY G 42 1 12 HELIX 26 AC8 LEU G 50 ALA G 77 1 28 HELIX 27 AC9 THR G 83 GLN G 94 1 12 HELIX 28 AD1 ASN H 26 ILE H 30 5 5 HELIX 29 AD2 THR H 31 GLY H 43 1 13 HELIX 30 AD3 LEU H 50 ALA H 77 1 28 HELIX 31 AD4 THR H 83 GLN H 94 1 12 SHEET 1 AA1 2 ARG A 44 VAL A 45 0 SHEET 2 AA1 2 THR C 117 ILE C 118 1 O ILE C 118 N ARG A 44 SHEET 1 AA2 2 ARG A 79 ILE A 80 0 SHEET 2 AA2 2 GLY C 82 ILE C 83 1 O GLY C 82 N ILE A 80 SHEET 1 AA3 2 ARG B 44 VAL B 45 0 SHEET 2 AA3 2 THR D 117 ILE D 118 1 O ILE D 118 N ARG B 44 SHEET 1 AA4 2 ARG B 79 ILE B 80 0 SHEET 2 AA4 2 GLY D 82 ILE D 83 1 O GLY D 82 N ILE B 80 SHEET 1 AA5 2 ARG E 84 PHE E 85 0 SHEET 2 AA5 2 THR G 81 VAL G 82 1 O VAL G 82 N ARG E 84 SHEET 1 AA6 2 THR E 119 ILE E 120 0 SHEET 2 AA6 2 ARG G 46 ILE G 47 1 O ARG G 46 N ILE E 120 SHEET 1 AA7 2 ARG F 84 PHE F 85 0 SHEET 2 AA7 2 THR H 81 VAL H 82 1 O VAL H 82 N ARG F 84 SHEET 1 AA8 2 THR F 119 ILE F 120 0 SHEET 2 AA8 2 ARG H 46 ILE H 47 1 O ARG H 46 N ILE F 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000