HEADER ISOMERASE 31-JUL-23 8Q1F TITLE D10N,P146A VARIANT OF BETA-PHOSPHOGLUCOMUTASE FROM LACTOCOCCUS LACTIS TITLE 2 IN COMPLEX WITH NATIVE BETA-GLUCOSE 1,6-BISPHOSPHATE INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS IL1403; SOURCE 3 ORGANISM_TAXID: 272623; SOURCE 4 GENE: JCM5805K_2499; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS MUTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.A.CRUZ-NAVARRETE,N.J.BAXTER,A.J.FLINDERS,A.BUZOIANU,M.J.CLIFF, AUTHOR 2 P.J.BAKER,J.P.WALTHO REVDAT 1 07-AUG-24 8Q1F 0 JRNL AUTH F.A.CRUZ-NAVARRETE,N.J.BAXTER,A.J.FLINDERS,A.BUZOIANU, JRNL AUTH 2 M.J.CLIFF,P.J.BAKER,J.P.WALTHO JRNL TITL PERI ACTIVE SITE CATALYSIS OF PROLINE ISOMERISATION IS THE JRNL TITL 2 MOLECULAR BASIS OF ALLOMORPHY IN BETA-PHOSPHOGLUCOMUTASE. JRNL REF COMMUN BIOL V. 7 909 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 39068257 JRNL DOI 10.1038/S42003-024-06577-9 REMARK 2 REMARK 2 RESOLUTION. 1.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.3 REMARK 3 NUMBER OF REFLECTIONS : 166313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.944 REMARK 3 FREE R VALUE TEST SET COUNT : 8222 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2035 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 13.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04700 REMARK 3 B22 (A**2) : 0.61800 REMARK 3 B33 (A**2) : -0.56400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3668 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3618 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4985 ; 1.486 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8392 ; 0.519 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 4.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;12.209 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4205 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 755 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 727 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 78 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1812 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.106 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7286 ;28.835 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8Q1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292130525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166355 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.010 REMARK 200 RESOLUTION RANGE LOW (A) : 39.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 MM BPGM-D10N,P146A 50 MM MGCL2 10 REMARK 280 MM BG16BP 28% PEG 4000 100 MM SODIUM ACETATE 100 MM TRIS, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.83150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -71.59 -95.92 REMARK 500 VAL A 12 -66.68 -124.67 REMARK 500 LEU B 9 -72.07 -96.40 REMARK 500 VAL B 12 -67.07 -125.68 REMARK 500 ALA B 143 11.33 -144.98 REMARK 500 LYS B 145 -121.90 59.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 207 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 643 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 644 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 645 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 646 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 647 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 648 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 634 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 635 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 636 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B 637 DISTANCE = 7.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 GLU A 169 OE1 85.9 REMARK 620 3 B16 A 301 O3X 88.0 173.8 REMARK 620 4 HOH A 404 O 89.3 83.3 97.2 REMARK 620 5 HOH A 499 O 178.4 92.9 93.3 89.6 REMARK 620 6 HOH A 500 O 93.0 87.8 92.0 170.7 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASN A 10 O 86.9 REMARK 620 3 ASP A 170 OD1 84.5 86.9 REMARK 620 4 B16 A 301 O2X 101.6 96.7 173.0 REMARK 620 5 HOH A 404 O 89.1 174.8 89.4 87.3 REMARK 620 6 HOH A 433 O 169.0 87.8 85.6 88.6 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 129 O REMARK 620 2 PHE A 132 O 97.8 REMARK 620 3 HOH A 533 O 94.8 76.4 REMARK 620 4 HOH A 572 O 87.1 96.8 173.2 REMARK 620 5 HOH A 575 O 172.4 80.1 91.9 85.9 REMARK 620 6 HOH A 591 O 99.1 154.4 83.2 103.0 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 460 O REMARK 620 2 HOH A 497 O 87.7 REMARK 620 3 HOH A 602 O 96.5 172.7 REMARK 620 4 HOH A 607 O 87.2 101.2 85.0 REMARK 620 5 HOH A 609 O 92.5 90.2 83.7 168.5 REMARK 620 6 HOH A 643 O 176.7 91.6 84.6 89.8 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 ASN B 10 O 87.1 REMARK 620 3 ASP B 170 OD1 84.1 87.2 REMARK 620 4 B16 B 301 O2X 103.1 96.8 171.9 REMARK 620 5 HOH B 403 O 88.6 174.2 88.5 88.0 REMARK 620 6 HOH B 429 O 168.0 87.1 85.1 88.0 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD1 REMARK 620 2 GLU B 169 OE1 86.5 REMARK 620 3 B16 B 301 O3X 87.1 173.5 REMARK 620 4 HOH B 403 O 89.3 83.0 96.2 REMARK 620 5 HOH B 489 O 92.6 89.1 91.9 171.7 REMARK 620 6 HOH B 565 O 177.9 91.5 95.0 91.0 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 437 O REMARK 620 2 HOH B 443 O 80.3 REMARK 620 3 HOH B 582 O 79.1 101.4 REMARK 620 4 HOH B 598 O 89.9 164.4 88.6 REMARK 620 5 HOH B 609 O 81.8 86.8 157.6 79.8 REMARK 620 6 HOH B 631 O 167.8 95.3 90.7 96.6 109.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OK1 RELATED DB: PDB REMARK 900 D10N VARIANT OF BETA-PHOSPHOGLUCOMUTASE FROM LACTOCOCCUS LACTIS REMARK 900 TRAPPED WITH NATIVE BETA-GLUCOSE 1,6-BISPHOSPHATE INTERMEDIATE TO REMARK 900 1.9 A RESOLUTION DBREF1 8Q1F A 1 221 UNP A0A0A7T4I1_LACLL DBREF2 8Q1F A A0A0A7T4I1 1 221 DBREF1 8Q1F B 1 221 UNP A0A0A7T4I1_LACLL DBREF2 8Q1F B A0A0A7T4I1 1 221 SEQADV 8Q1F ASN A 10 UNP A0A0A7T4I ASP 10 ENGINEERED MUTATION SEQADV 8Q1F ALA A 146 UNP A0A0A7T4I PRO 146 ENGINEERED MUTATION SEQADV 8Q1F ASN B 10 UNP A0A0A7T4I ASP 10 ENGINEERED MUTATION SEQADV 8Q1F ALA B 146 UNP A0A0A7T4I PRO 146 ENGINEERED MUTATION SEQRES 1 A 221 MET PHE LYS ALA VAL LEU PHE ASP LEU ASN GLY VAL ILE SEQRES 2 A 221 THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS ALA SEQRES 3 A 221 LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG GLN SEQRES 4 A 221 PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SER SEQRES 5 A 221 LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SER SEQRES 6 A 221 ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN ASP SEQRES 7 A 221 ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA ASP SEQRES 8 A 221 VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU ARG SEQRES 9 A 221 SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER LYS SEQRES 10 A 221 ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR GLY SEQRES 11 A 221 TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA ALA SEQRES 12 A 221 SER LYS ALA ALA PRO ASP ILE PHE ILE ALA ALA ALA HIS SEQRES 13 A 221 ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU GLU SEQRES 14 A 221 ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER GLY SEQRES 15 A 221 ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU GLY SEQRES 16 A 221 ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR THR SEQRES 17 A 221 LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN LYS GLN LYS SEQRES 1 B 221 MET PHE LYS ALA VAL LEU PHE ASP LEU ASN GLY VAL ILE SEQRES 2 B 221 THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS ALA SEQRES 3 B 221 LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG GLN SEQRES 4 B 221 PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SER SEQRES 5 B 221 LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SER SEQRES 6 B 221 ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN ASP SEQRES 7 B 221 ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA ASP SEQRES 8 B 221 VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU ARG SEQRES 9 B 221 SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER LYS SEQRES 10 B 221 ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR GLY SEQRES 11 B 221 TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA ALA SEQRES 12 B 221 SER LYS ALA ALA PRO ASP ILE PHE ILE ALA ALA ALA HIS SEQRES 13 B 221 ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU GLU SEQRES 14 B 221 ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER GLY SEQRES 15 B 221 ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU GLY SEQRES 16 B 221 ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR THR SEQRES 17 B 221 LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN LYS GLN LYS HET B16 A 301 20 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET TRS A 305 16 HET NA A 306 1 HET EDO A 307 4 HET B16 B 301 20 HET MG B 302 1 HET MG B 303 1 HET MG B 304 1 HET EDO B 305 4 HET EDO B 306 4 HETNAM B16 1,6-DI-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN B16 1,6-DI-O-PHOSPHONO-BETA-D-GLUCOSE; 1,6-DI-O-PHOSPHONO- HETSYN 2 B16 D-GLUCOSE; 1,6-DI-O-PHOSPHONO-GLUCOSE HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 B16 2(C6 H14 O12 P2) FORMUL 4 MG 6(MG 2+) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 NA NA 1+ FORMUL 9 EDO 3(C2 H6 O2) FORMUL 16 HOH *485(H2 O) HELIX 1 AA1 THR A 16 ILE A 31 1 16 HELIX 2 AA2 ASP A 37 GLU A 42 1 6 HELIX 3 AA3 SER A 48 ALA A 60 1 13 HELIX 4 AA4 SER A 65 ILE A 84 1 20 HELIX 5 AA5 SER A 88 VAL A 92 5 5 HELIX 6 AA6 GLY A 95 ASN A 106 1 12 HELIX 7 AA7 ASN A 118 MET A 126 1 9 HELIX 8 AA8 LEU A 128 PHE A 132 5 5 HELIX 9 AA9 ASP A 137 VAL A 141 5 5 HELIX 10 AB1 PRO A 148 VAL A 158 1 11 HELIX 11 AB2 ALA A 161 SER A 163 5 3 HELIX 12 AB3 SER A 171 GLY A 182 1 12 HELIX 13 AB4 ARG A 190 GLY A 195 1 6 HELIX 14 AB5 ASP A 203 TYR A 207 5 5 HELIX 15 AB6 THR A 208 GLN A 220 1 13 HELIX 16 AB7 THR B 16 GLY B 32 1 17 HELIX 17 AB8 ASP B 37 GLU B 42 1 6 HELIX 18 AB9 GLN B 43 LYS B 45 5 3 HELIX 19 AC1 SER B 48 ALA B 60 1 13 HELIX 20 AC2 SER B 65 ILE B 84 1 20 HELIX 21 AC3 SER B 88 VAL B 92 5 5 HELIX 22 AC4 GLY B 95 ASN B 106 1 12 HELIX 23 AC5 ASN B 118 MET B 126 1 9 HELIX 24 AC6 LEU B 128 PHE B 132 5 5 HELIX 25 AC7 PRO B 148 VAL B 158 1 11 HELIX 26 AC8 ALA B 161 SER B 163 5 3 HELIX 27 AC9 SER B 171 GLY B 182 1 12 HELIX 28 AD1 ARG B 190 GLY B 195 1 6 HELIX 29 AD2 ASP B 203 TYR B 207 5 5 HELIX 30 AD3 THR B 208 LYS B 221 1 14 SHEET 1 AA1 6 ALA A 134 ILE A 135 0 SHEET 2 AA1 6 LYS A 109 LEU A 112 1 N LEU A 112 O ALA A 134 SHEET 3 AA1 6 ALA A 4 PHE A 7 1 N PHE A 7 O ALA A 111 SHEET 4 AA1 6 SER A 165 GLU A 169 1 O ILE A 166 N LEU A 6 SHEET 5 AA1 6 LEU A 184 VAL A 188 1 O LEU A 184 N GLY A 167 SHEET 6 AA1 6 VAL A 199 VAL A 201 1 O VAL A 199 N GLY A 187 SHEET 1 AA2 6 ALA B 134 ILE B 135 0 SHEET 2 AA2 6 LYS B 109 LEU B 112 1 N LEU B 112 O ALA B 134 SHEET 3 AA2 6 ALA B 4 PHE B 7 1 N PHE B 7 O ALA B 111 SHEET 4 AA2 6 SER B 165 GLU B 169 1 O ILE B 166 N LEU B 6 SHEET 5 AA2 6 LEU B 184 VAL B 188 1 O LEU B 184 N SER B 165 SHEET 6 AA2 6 VAL B 199 VAL B 201 1 O VAL B 201 N GLY B 187 LINK OD1 ASP A 8 MG MG A 302 1555 1555 2.00 LINK OD2 ASP A 8 MG MG A 303 1555 1555 2.01 LINK O ASN A 10 MG MG A 303 1555 1555 2.04 LINK O THR A 129 NA NA A 306 1555 1555 2.33 LINK O PHE A 132 NA NA A 306 1555 1555 2.40 LINK OE1 GLU A 169 MG MG A 302 1555 1555 2.16 LINK OD1 ASP A 170 MG MG A 303 1555 1555 2.13 LINK O3X B16 A 301 MG MG A 302 1555 1555 2.10 LINK O2X B16 A 301 MG MG A 303 1555 1555 2.05 LINK MG MG A 302 O HOH A 404 1555 1555 2.23 LINK MG MG A 302 O HOH A 499 1555 1555 2.03 LINK MG MG A 302 O HOH A 500 1555 1555 2.08 LINK MG MG A 303 O HOH A 404 1555 1555 2.14 LINK MG MG A 303 O HOH A 433 1555 1555 2.11 LINK MG MG A 304 O HOH A 460 1555 1555 2.06 LINK MG MG A 304 O HOH A 497 1555 1555 2.18 LINK MG MG A 304 O HOH A 602 1555 1555 2.05 LINK MG MG A 304 O HOH A 607 1555 1555 1.94 LINK MG MG A 304 O HOH A 609 1555 1555 1.94 LINK MG MG A 304 O HOH A 643 1555 1555 2.28 LINK NA NA A 306 O HOH A 533 1555 1555 2.32 LINK NA NA A 306 O HOH A 572 1555 1555 2.35 LINK NA NA A 306 O HOH A 575 1555 1555 2.71 LINK NA NA A 306 O HOH A 591 1555 1555 2.51 LINK OD2 ASP B 8 MG MG B 302 1555 1555 2.02 LINK OD1 ASP B 8 MG MG B 303 1555 1555 2.01 LINK O ASN B 10 MG MG B 302 1555 1555 2.06 LINK OE1 GLU B 169 MG MG B 303 1555 1555 2.14 LINK OD1 ASP B 170 MG MG B 302 1555 1555 2.12 LINK O2X B16 B 301 MG MG B 302 1555 1555 2.02 LINK O3X B16 B 301 MG MG B 303 1555 1555 2.07 LINK MG MG B 302 O HOH B 403 1555 1555 2.14 LINK MG MG B 302 O HOH B 429 1555 1555 2.11 LINK MG MG B 303 O HOH B 403 1555 1555 2.29 LINK MG MG B 303 O HOH B 489 1555 1555 2.08 LINK MG MG B 303 O HOH B 565 1555 1555 2.05 LINK MG MG B 304 O HOH B 437 1555 1555 2.12 LINK MG MG B 304 O HOH B 443 1555 1555 2.28 LINK MG MG B 304 O HOH B 582 1555 1555 2.36 LINK MG MG B 304 O HOH B 598 1555 1555 1.92 LINK MG MG B 304 O HOH B 609 1555 1555 2.07 LINK MG MG B 304 O HOH B 631 1555 1555 1.74 CRYST1 32.023 79.663 79.848 90.00 97.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031228 0.000000 0.004174 0.00000 SCALE2 0.000000 0.012553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012635 0.00000