HEADER DNA BINDING PROTEIN 31-JUL-23 8Q1K TITLE STRUCTURAL ANALYSIS OF PLD3 REVEALS INSIGHTS INTO THE MECHANISM OF TITLE 2 LYSOSOMAL 5' EXONUCLEASE-MEDIATED NUCLEIC ACID DEGRADATION CAVEAT 8Q1K MAN C 3 HAS WRONG CHIRALITY AT ATOM C1 MAN F 5 HAS WRONG CAVEAT 2 8Q1K CHIRALITY AT ATOM C1 MAN F 6 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-3' EXONUCLEASE PLD3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLD3, STRUCTURAL BIOLOGY, LYSOSOME, DNA/RNA DEGRADATION, KEYWDS 2 PHOSPHOLIPASE D, 5' EXONUCLEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,O.DAUMKE,M.DAMME REVDAT 2 24-JAN-24 8Q1K 1 JRNL REVDAT 1 06-DEC-23 8Q1K 0 JRNL AUTH Y.ROSKE,C.CAPPEL,N.CREMER,P.HOFFMANN,T.KOUDELKA,A.THOLEY, JRNL AUTH 2 U.HEINEMANN,O.DAUMKE,M.DAMME JRNL TITL STRUCTURAL ANALYSIS OF PLD3 REVEALS INSIGHTS INTO THE JRNL TITL 2 MECHANISM OF LYSOSOMAL 5' EXONUCLEASE-MEDIATED NUCLEIC ACID JRNL TITL 3 DEGRADATION. JRNL REF NUCLEIC ACIDS RES. V. 52 370 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 37994783 JRNL DOI 10.1093/NAR/GKAD1114 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 198247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 294 REMARK 3 SOLVENT ATOMS : 1224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.16000 REMARK 3 B22 (A**2) : -9.31000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.013 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.012 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7173 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6494 ; 0.001 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9833 ; 1.297 ; 1.691 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15010 ; 1.258 ; 1.611 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 875 ; 6.585 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;30.220 ;21.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1066 ;11.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;12.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 982 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9069 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1673 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3401 ; 1.931 ; 2.650 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3400 ; 1.918 ; 2.649 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4254 ; 2.389 ; 3.994 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4255 ; 2.389 ; 3.995 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3772 ; 2.263 ; 3.211 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3772 ; 2.260 ; 3.211 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5560 ; 2.839 ; 4.690 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8382 ; 5.028 ;36.608 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8382 ; 5.028 ;36.605 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 13667 ; 1.015 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8233 99.7954 42.8339 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0087 REMARK 3 T33: 0.0358 T12: -0.0024 REMARK 3 T13: -0.0055 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.2720 L22: 0.5435 REMARK 3 L33: 3.9013 L12: -0.5146 REMARK 3 L13: 0.6136 L23: -1.2872 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.0496 S13: -0.1369 REMARK 3 S21: -0.0467 S22: 0.0432 S23: 0.0776 REMARK 3 S31: 0.1521 S32: -0.0797 S33: -0.1153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9933 112.4907 18.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0124 REMARK 3 T33: 0.0340 T12: 0.0025 REMARK 3 T13: -0.0020 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.3227 L22: 0.3339 REMARK 3 L33: 0.6028 L12: -0.0219 REMARK 3 L13: -0.3852 L23: -0.1199 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0371 S13: 0.0459 REMARK 3 S21: -0.0265 S22: -0.0044 S23: -0.0072 REMARK 3 S31: -0.0042 S32: -0.0402 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7744 110.7861 32.2506 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.0109 REMARK 3 T33: 0.0275 T12: -0.0003 REMARK 3 T13: 0.0013 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1363 L22: 0.0410 REMARK 3 L33: 0.1408 L12: 0.0187 REMARK 3 L13: 0.0003 L23: -0.0550 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0028 S13: 0.0004 REMARK 3 S21: 0.0021 S22: -0.0104 S23: -0.0077 REMARK 3 S31: -0.0076 S32: 0.0105 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5044 88.8514 30.5281 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0159 REMARK 3 T33: 0.0263 T12: -0.0019 REMARK 3 T13: -0.0015 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0871 L22: 0.1633 REMARK 3 L33: 0.0883 L12: -0.0668 REMARK 3 L13: -0.0138 L23: 0.0757 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0052 S13: 0.0234 REMARK 3 S21: 0.0075 S22: 0.0016 S23: -0.0204 REMARK 3 S31: 0.0097 S32: 0.0024 S33: -0.0077 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 361 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3525 91.0482 14.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.0142 REMARK 3 T33: 0.0318 T12: -0.0020 REMARK 3 T13: -0.0011 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0992 L22: 0.1879 REMARK 3 L33: 0.1149 L12: -0.0211 REMARK 3 L13: -0.0731 L23: -0.0836 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0006 S13: 0.0268 REMARK 3 S21: -0.0165 S22: 0.0100 S23: 0.0024 REMARK 3 S31: 0.0083 S32: -0.0072 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: 0.0024 REMARK 3 T33: 0.0024 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3196 40.9433 24.8094 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0130 REMARK 3 T33: 0.0134 T12: 0.0029 REMARK 3 T13: 0.0023 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.2999 L22: 0.0954 REMARK 3 L33: 0.4490 L12: 0.0144 REMARK 3 L13: 0.1901 L23: 0.1517 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0392 S13: -0.0179 REMARK 3 S21: -0.0081 S22: -0.0012 S23: -0.0073 REMARK 3 S31: 0.0042 S32: 0.0211 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 249 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0618 40.4499 32.7029 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0110 REMARK 3 T33: 0.0193 T12: -0.0004 REMARK 3 T13: -0.0008 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2923 L22: 0.1032 REMARK 3 L33: 0.1293 L12: 0.0330 REMARK 3 L13: 0.0489 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0023 S13: -0.0117 REMARK 3 S21: 0.0090 S22: -0.0073 S23: 0.0099 REMARK 3 S31: 0.0078 S32: -0.0059 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 250 B 299 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1201 52.7626 43.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0150 REMARK 3 T33: 0.0373 T12: 0.0019 REMARK 3 T13: -0.0014 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.5378 L22: 0.1248 REMARK 3 L33: 0.0797 L12: 0.2571 REMARK 3 L13: -0.0872 L23: -0.0338 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0246 S13: 0.0080 REMARK 3 S21: 0.0024 S22: -0.0098 S23: 0.0098 REMARK 3 S31: -0.0038 S32: 0.0154 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 300 B 385 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7611 66.2540 24.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0166 REMARK 3 T33: 0.0233 T12: -0.0016 REMARK 3 T13: 0.0015 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0944 L22: 0.0840 REMARK 3 L33: 0.1342 L12: -0.0404 REMARK 3 L13: 0.1048 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0101 S13: -0.0104 REMARK 3 S21: 0.0006 S22: 0.0039 S23: 0.0125 REMARK 3 S31: -0.0084 S32: -0.0100 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 386 B 434 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5059 57.5181 16.7397 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.0166 REMARK 3 T33: 0.0384 T12: -0.0001 REMARK 3 T13: -0.0008 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0566 L22: 0.0500 REMARK 3 L33: 0.1489 L12: 0.0003 REMARK 3 L13: 0.0844 L23: 0.0260 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.0036 S13: -0.0150 REMARK 3 S21: -0.0095 S22: 0.0072 S23: -0.0101 REMARK 3 S31: -0.0046 S32: -0.0005 S33: -0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Q1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 200406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 44.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.770 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 4000, 0.02 M NAI, 0.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.65200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 99 REMARK 465 THR A 100 REMARK 465 SER B 99 REMARK 465 GLN B 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 611 O HOH A 653 1.75 REMARK 500 OD3 OCS A 300 O HOH A 601 2.01 REMARK 500 NE2 GLN B 209 O HOH B 601 2.05 REMARK 500 O4 NAG D 1 O5 NAG D 2 2.17 REMARK 500 O HOH B 615 O HOH B 1037 2.17 REMARK 500 O HOH B 1037 O HOH B 1147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -56.82 -121.57 REMARK 500 SER A 118 -53.40 -123.65 REMARK 500 THR A 210 -49.44 -136.18 REMARK 500 SER A 320 -61.24 -127.58 REMARK 500 SER A 320 -59.53 -128.57 REMARK 500 ASP A 392 80.52 -153.88 REMARK 500 ARG A 413 60.65 62.49 REMARK 500 TRP A 433 68.05 -100.61 REMARK 500 GLU A 440 -33.83 -130.47 REMARK 500 THR B 210 -47.73 -135.77 REMARK 500 PRO B 266 152.94 -49.98 REMARK 500 SER B 320 -61.56 -125.15 REMARK 500 SER B 320 -60.43 -125.78 REMARK 500 ASP B 392 80.06 -156.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1223 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1224 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1225 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1228 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1230 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1231 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1233 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B1172 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1173 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1174 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B1175 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1176 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B1177 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B1180 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B1181 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B1182 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B1183 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B1184 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B1186 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH B1187 DISTANCE = 7.84 ANGSTROMS DBREF 8Q1K A 72 490 UNP Q8IV08 PLD3_HUMAN 72 490 DBREF 8Q1K B 72 490 UNP Q8IV08 PLD3_HUMAN 72 490 SEQADV 8Q1K ALA A 491 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1K ALA A 492 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1K GLN A 493 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1K ALA B 491 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1K ALA B 492 UNP Q8IV08 EXPRESSION TAG SEQADV 8Q1K GLN B 493 UNP Q8IV08 EXPRESSION TAG SEQRES 1 A 422 GLN ARG PRO ALA PRO CYS TYR ASP PRO CYS GLU ALA VAL SEQRES 2 A 422 LEU VAL GLU SER ILE PRO GLU GLY LEU ASP PHE PRO ASN SEQRES 3 A 422 ALA SER THR GLY ASN PRO SER THR SER GLN ALA TRP LEU SEQRES 4 A 422 GLY LEU LEU ALA GLY ALA HIS SER SER LEU ASP ILE ALA SEQRES 5 A 422 SER PHE TYR TRP THR LEU THR ASN ASN ASP THR HIS THR SEQRES 6 A 422 GLN GLU PRO SER ALA GLN GLN GLY GLU GLU VAL LEU ARG SEQRES 7 A 422 GLN LEU GLN THR LEU ALA PRO LYS GLY VAL ASN VAL ARG SEQRES 8 A 422 ILE ALA VAL SER LYS PRO SER GLY PRO GLN PRO GLN ALA SEQRES 9 A 422 ASP LEU GLN ALA LEU LEU GLN SER GLY ALA GLN VAL ARG SEQRES 10 A 422 MET VAL ASP MET GLN LYS LEU THR HIS GLY VAL LEU HIS SEQRES 11 A 422 THR LYS PHE TRP VAL VAL ASP GLN THR HIS PHE TYR LEU SEQRES 12 A 422 GLY SER ALA ASN MET ASP TRP ARG SER LEU THR GLN VAL SEQRES 13 A 422 LYS GLU LEU GLY VAL VAL MET TYR ASN CYS SER CYS LEU SEQRES 14 A 422 ALA ARG ASP LEU THR LYS ILE PHE GLU ALA TYR TRP PHE SEQRES 15 A 422 LEU GLY GLN ALA GLY SER SER ILE PRO SER THR TRP PRO SEQRES 16 A 422 ARG PHE TYR ASP THR ARG TYR ASN GLN GLU THR PRO MET SEQRES 17 A 422 GLU ILE CYS LEU ASN GLY THR PRO ALA LEU ALA TYR LEU SEQRES 18 A 422 ALA SER ALA PRO PRO PRO LEU OCS PRO SER GLY ARG THR SEQRES 19 A 422 PRO ASP LEU LYS ALA LEU LEU ASN VAL VAL ASP ASN ALA SEQRES 20 A 422 ARG SER PHE ILE TYR VAL ALA VAL MET ASN TYR LEU PRO SEQRES 21 A 422 THR LEU GLU PHE SER HIS PRO HIS ARG PHE TRP PRO ALA SEQRES 22 A 422 ILE ASP ASP GLY LEU ARG ARG ALA THR TYR GLU ARG GLY SEQRES 23 A 422 VAL LYS VAL ARG LEU LEU ILE SER CYS TRP GLY HIS SER SEQRES 24 A 422 GLU PRO SER MET ARG ALA PHE LEU LEU SER LEU ALA ALA SEQRES 25 A 422 LEU ARG ASP ASN HIS THR HIS SER ASP ILE GLN VAL LYS SEQRES 26 A 422 LEU PHE VAL VAL PRO ALA ASP GLU ALA GLN ALA ARG ILE SEQRES 27 A 422 PRO TYR ALA ARG VAL ASN HIS ASN LYS TYR MET VAL THR SEQRES 28 A 422 GLU ARG ALA THR TYR ILE GLY THR SER ASN TRP SER GLY SEQRES 29 A 422 ASN TYR PHE THR GLU THR ALA GLY THR SER LEU LEU VAL SEQRES 30 A 422 THR GLN ASN GLY ARG GLY GLY LEU ARG SER GLN LEU GLU SEQRES 31 A 422 ALA ILE PHE LEU ARG ASP TRP ASP SER PRO TYR SER HIS SEQRES 32 A 422 ASP LEU ASP THR SER ALA ASP SER VAL GLY ASN ALA CYS SEQRES 33 A 422 ARG LEU LEU ALA ALA GLN SEQRES 1 B 422 GLN ARG PRO ALA PRO CYS TYR ASP PRO CYS GLU ALA VAL SEQRES 2 B 422 LEU VAL GLU SER ILE PRO GLU GLY LEU ASP PHE PRO ASN SEQRES 3 B 422 ALA SER THR GLY ASN PRO SER THR SER GLN ALA TRP LEU SEQRES 4 B 422 GLY LEU LEU ALA GLY ALA HIS SER SER LEU ASP ILE ALA SEQRES 5 B 422 SER PHE TYR TRP THR LEU THR ASN ASN ASP THR HIS THR SEQRES 6 B 422 GLN GLU PRO SER ALA GLN GLN GLY GLU GLU VAL LEU ARG SEQRES 7 B 422 GLN LEU GLN THR LEU ALA PRO LYS GLY VAL ASN VAL ARG SEQRES 8 B 422 ILE ALA VAL SER LYS PRO SER GLY PRO GLN PRO GLN ALA SEQRES 9 B 422 ASP LEU GLN ALA LEU LEU GLN SER GLY ALA GLN VAL ARG SEQRES 10 B 422 MET VAL ASP MET GLN LYS LEU THR HIS GLY VAL LEU HIS SEQRES 11 B 422 THR LYS PHE TRP VAL VAL ASP GLN THR HIS PHE TYR LEU SEQRES 12 B 422 GLY SER ALA ASN MET ASP TRP ARG SER LEU THR GLN VAL SEQRES 13 B 422 LYS GLU LEU GLY VAL VAL MET TYR ASN CYS SER CYS LEU SEQRES 14 B 422 ALA ARG ASP LEU THR LYS ILE PHE GLU ALA TYR TRP PHE SEQRES 15 B 422 LEU GLY GLN ALA GLY SER SER ILE PRO SER THR TRP PRO SEQRES 16 B 422 ARG PHE TYR ASP THR ARG TYR ASN GLN GLU THR PRO MET SEQRES 17 B 422 GLU ILE CYS LEU ASN GLY THR PRO ALA LEU ALA TYR LEU SEQRES 18 B 422 ALA SER ALA PRO PRO PRO LEU OCS PRO SER GLY ARG THR SEQRES 19 B 422 PRO ASP LEU LYS ALA LEU LEU ASN VAL VAL ASP ASN ALA SEQRES 20 B 422 ARG SER PHE ILE TYR VAL ALA VAL MET ASN TYR LEU PRO SEQRES 21 B 422 THR LEU GLU PHE SER HIS PRO HIS ARG PHE TRP PRO ALA SEQRES 22 B 422 ILE ASP ASP GLY LEU ARG ARG ALA THR TYR GLU ARG GLY SEQRES 23 B 422 VAL LYS VAL ARG LEU LEU ILE SER CYS TRP GLY HIS SER SEQRES 24 B 422 GLU PRO SER MET ARG ALA PHE LEU LEU SER LEU ALA ALA SEQRES 25 B 422 LEU ARG ASP ASN HIS THR HIS SER ASP ILE GLN VAL LYS SEQRES 26 B 422 LEU PHE VAL VAL PRO ALA ASP GLU ALA GLN ALA ARG ILE SEQRES 27 B 422 PRO TYR ALA ARG VAL ASN HIS ASN LYS TYR MET VAL THR SEQRES 28 B 422 GLU ARG ALA THR TYR ILE GLY THR SER ASN TRP SER GLY SEQRES 29 B 422 ASN TYR PHE THR GLU THR ALA GLY THR SER LEU LEU VAL SEQRES 30 B 422 THR GLN ASN GLY ARG GLY GLY LEU ARG SER GLN LEU GLU SEQRES 31 B 422 ALA ILE PHE LEU ARG ASP TRP ASP SER PRO TYR SER HIS SEQRES 32 B 422 ASP LEU ASP THR SER ALA ASP SER VAL GLY ASN ALA CYS SEQRES 33 B 422 ARG LEU LEU ALA ALA GLN MODRES 8Q1K OCS A 300 CYS MODIFIED RESIDUE MODRES 8Q1K OCS B 300 CYS MODIFIED RESIDUE HET OCS A 300 9 HET OCS B 300 9 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN C 7 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET MAN F 6 11 HET MAN F 7 11 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET PO4 A 504 5 HET PO4 A 505 5 HET PO4 A 506 5 HET PO4 A 507 5 HET MN A 508 1 HET MN A 509 1 HET EDO B 501 4 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET PO4 B 505 5 HET PO4 B 506 5 HET PO4 B 507 5 HET PO4 B 508 5 HET MN B 509 1 HET MN B 510 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM MN MANGANESE (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 MAN 9(C6 H12 O6) FORMUL 6 BMA C6 H12 O6 FORMUL 7 EDO 7(C2 H6 O2) FORMUL 10 PO4 8(O4 P 3-) FORMUL 14 MN 4(MN 2+) FORMUL 26 HOH *1224(H2 O) HELIX 1 AA1 SER A 104 ALA A 116 1 13 HELIX 2 AA2 THR A 130 HIS A 135 1 6 HELIX 3 AA3 GLU A 138 SER A 140 5 3 HELIX 4 AA4 ALA A 141 GLN A 152 1 12 HELIX 5 AA5 THR A 153 GLY A 158 5 6 HELIX 6 AA6 GLN A 174 GLY A 184 1 11 HELIX 7 AA7 ASP A 191 HIS A 197 1 7 HELIX 8 AA8 TRP A 221 GLN A 226 1 6 HELIX 9 AA9 CYS A 237 GLY A 255 1 19 HELIX 10 AB1 PRO A 266 ASP A 270 5 5 HELIX 11 AB2 PRO A 296 OCS A 300 5 5 HELIX 12 AB3 PRO A 306 ALA A 318 1 13 HELIX 13 AB4 PRO A 343 GLY A 357 1 15 HELIX 14 AB5 SER A 373 ALA A 383 1 11 HELIX 15 AB6 ASP A 403 ARG A 408 1 6 HELIX 16 AB7 GLY A 435 GLU A 440 1 6 HELIX 17 AB8 GLY A 455 SER A 470 1 16 HELIX 18 AB9 SER A 479 VAL A 483 5 5 HELIX 19 AC1 SER B 104 ALA B 116 1 13 HELIX 20 AC2 THR B 130 HIS B 135 1 6 HELIX 21 AC3 GLU B 138 SER B 140 5 3 HELIX 22 AC4 ALA B 141 GLN B 152 1 12 HELIX 23 AC5 THR B 153 GLY B 158 5 6 HELIX 24 AC6 GLN B 174 GLY B 184 1 11 HELIX 25 AC7 ASP B 191 HIS B 197 1 7 HELIX 26 AC8 TRP B 221 GLN B 226 1 6 HELIX 27 AC9 CYS B 237 GLY B 255 1 19 HELIX 28 AD1 PRO B 266 ASP B 270 5 5 HELIX 29 AD2 PRO B 296 OCS B 300 5 5 HELIX 30 AD3 PRO B 306 ALA B 318 1 13 HELIX 31 AD4 PRO B 343 GLY B 357 1 15 HELIX 32 AD5 SER B 373 ALA B 383 1 11 HELIX 33 AD6 ASP B 403 ARG B 408 1 6 HELIX 34 AD7 GLY B 435 GLU B 440 1 6 HELIX 35 AD8 GLY B 454 SER B 470 1 17 HELIX 36 AD9 SER B 479 VAL B 483 5 5 SHEET 1 AA116 GLN A 186 VAL A 190 0 SHEET 2 AA116 ASN A 160 SER A 166 1 N VAL A 165 O VAL A 190 SHEET 3 AA116 SER A 119 SER A 124 1 N LEU A 120 O ARG A 162 SHEET 4 AA116 PHE A 204 VAL A 207 -1 O VAL A 206 N ASP A 121 SHEET 5 AA116 HIS A 211 GLY A 215 -1 O HIS A 211 N VAL A 207 SHEET 6 AA116 GLU A 229 TYR A 235 -1 O MET A 234 N PHE A 212 SHEET 7 AA116 PRO A 80 SER A 88 -1 N GLU A 82 O TYR A 235 SHEET 8 AA116 MET A 279 LEU A 283 1 N CYS A 282 O CYS A 81 SHEET 9 AA116 THR A 286 ALA A 295 -1 O ALA A 290 N MET A 279 SHEET 10 AA116 GLY A 443 THR A 449 -1 O THR A 449 N LEU A 289 SHEET 11 AA116 THR A 426 GLY A 429 -1 N THR A 426 O VAL A 448 SHEET 12 AA116 LYS A 418 THR A 422 -1 N MET A 420 O TYR A 427 SHEET 13 AA116 PHE A 321 VAL A 326 -1 N TYR A 323 O VAL A 421 SHEET 14 AA116 LYS A 359 SER A 365 1 O LEU A 363 N VAL A 324 SHEET 15 AA116 SER A 391 PHE A 398 1 O GLN A 394 N VAL A 360 SHEET 16 AA116 ARG A 385 ASP A 386 -1 N ASP A 386 O SER A 391 SHEET 1 AA216 GLN A 186 VAL A 190 0 SHEET 2 AA216 ASN A 160 SER A 166 1 N VAL A 165 O VAL A 190 SHEET 3 AA216 SER A 119 SER A 124 1 N LEU A 120 O ARG A 162 SHEET 4 AA216 PHE A 204 VAL A 207 -1 O VAL A 206 N ASP A 121 SHEET 5 AA216 HIS A 211 GLY A 215 -1 O HIS A 211 N VAL A 207 SHEET 6 AA216 GLU A 229 TYR A 235 -1 O MET A 234 N PHE A 212 SHEET 7 AA216 PRO A 80 SER A 88 -1 N GLU A 82 O TYR A 235 SHEET 8 AA216 MET A 279 LEU A 283 1 N CYS A 282 O CYS A 81 SHEET 9 AA216 THR A 286 ALA A 295 -1 O ALA A 290 N MET A 279 SHEET 10 AA216 GLY A 443 THR A 449 -1 O THR A 449 N LEU A 289 SHEET 11 AA216 THR A 426 GLY A 429 -1 N THR A 426 O VAL A 448 SHEET 12 AA216 LYS A 418 THR A 422 -1 N MET A 420 O TYR A 427 SHEET 13 AA216 PHE A 321 VAL A 326 -1 N TYR A 323 O VAL A 421 SHEET 14 AA216 LYS A 359 SER A 365 1 O LEU A 363 N VAL A 324 SHEET 15 AA216 SER A 391 PHE A 398 1 O GLN A 394 N VAL A 360 SHEET 16 AA216 SER A 473 HIS A 474 -1 O HIS A 474 N LEU A 397 SHEET 1 AA3 2 TRP A 127 THR A 128 0 SHEET 2 AA3 2 MET A 219 ASP A 220 1 O MET A 219 N THR A 128 SHEET 1 AA4 2 THR A 332 LEU A 333 0 SHEET 2 AA4 2 ARG A 340 PHE A 341 -1 O ARG A 340 N LEU A 333 SHEET 1 AA516 GLN B 186 VAL B 190 0 SHEET 2 AA516 ASN B 160 SER B 166 1 N VAL B 161 O GLN B 186 SHEET 3 AA516 SER B 119 SER B 124 1 N LEU B 120 O ARG B 162 SHEET 4 AA516 PHE B 204 VAL B 207 -1 O VAL B 206 N ASP B 121 SHEET 5 AA516 HIS B 211 GLY B 215 -1 O HIS B 211 N VAL B 207 SHEET 6 AA516 GLU B 229 TYR B 235 -1 O VAL B 232 N LEU B 214 SHEET 7 AA516 PRO B 80 SER B 88 -1 N GLU B 82 O TYR B 235 SHEET 8 AA516 MET B 279 LEU B 283 1 N CYS B 282 O CYS B 81 SHEET 9 AA516 THR B 286 ALA B 295 -1 O ALA B 290 N MET B 279 SHEET 10 AA516 GLY B 443 THR B 449 -1 O THR B 449 N LEU B 289 SHEET 11 AA516 THR B 426 GLY B 429 -1 N ILE B 428 O LEU B 446 SHEET 12 AA516 LYS B 418 THR B 422 -1 N MET B 420 O TYR B 427 SHEET 13 AA516 PHE B 321 VAL B 326 -1 N TYR B 323 O VAL B 421 SHEET 14 AA516 LYS B 359 SER B 365 1 O LEU B 363 N VAL B 324 SHEET 15 AA516 SER B 391 PHE B 398 1 O GLN B 394 N VAL B 360 SHEET 16 AA516 ARG B 385 ASP B 386 -1 N ASP B 386 O SER B 391 SHEET 1 AA616 GLN B 186 VAL B 190 0 SHEET 2 AA616 ASN B 160 SER B 166 1 N VAL B 161 O GLN B 186 SHEET 3 AA616 SER B 119 SER B 124 1 N LEU B 120 O ARG B 162 SHEET 4 AA616 PHE B 204 VAL B 207 -1 O VAL B 206 N ASP B 121 SHEET 5 AA616 HIS B 211 GLY B 215 -1 O HIS B 211 N VAL B 207 SHEET 6 AA616 GLU B 229 TYR B 235 -1 O VAL B 232 N LEU B 214 SHEET 7 AA616 PRO B 80 SER B 88 -1 N GLU B 82 O TYR B 235 SHEET 8 AA616 MET B 279 LEU B 283 1 N CYS B 282 O CYS B 81 SHEET 9 AA616 THR B 286 ALA B 295 -1 O ALA B 290 N MET B 279 SHEET 10 AA616 GLY B 443 THR B 449 -1 O THR B 449 N LEU B 289 SHEET 11 AA616 THR B 426 GLY B 429 -1 N ILE B 428 O LEU B 446 SHEET 12 AA616 LYS B 418 THR B 422 -1 N MET B 420 O TYR B 427 SHEET 13 AA616 PHE B 321 VAL B 326 -1 N TYR B 323 O VAL B 421 SHEET 14 AA616 LYS B 359 SER B 365 1 O LEU B 363 N VAL B 324 SHEET 15 AA616 SER B 391 PHE B 398 1 O GLN B 394 N VAL B 360 SHEET 16 AA616 SER B 473 HIS B 474 -1 O HIS B 474 N LEU B 397 SHEET 1 AA7 2 TRP B 127 THR B 128 0 SHEET 2 AA7 2 MET B 219 ASP B 220 1 O MET B 219 N THR B 128 SSBOND 1 CYS A 77 CYS A 239 1555 1555 2.04 SSBOND 2 CYS A 81 CYS A 237 1555 1555 2.05 SSBOND 3 CYS A 366 CYS A 487 1555 1555 2.05 SSBOND 4 CYS B 77 CYS B 239 1555 1555 2.07 SSBOND 5 CYS B 81 CYS B 237 1555 1555 2.05 SSBOND 6 CYS B 366 CYS B 487 1555 1555 2.07 LINK ND2 ASN A 236 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 284 C1 NAG C 1 1555 1555 1.43 LINK C LEU A 299 N OCS A 300 1555 1555 1.33 LINK C OCS A 300 N PRO A 301 1555 1555 1.35 LINK ND2 ASN B 236 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 284 C1 NAG F 1 1555 1555 1.43 LINK C LEU B 299 N OCS B 300 1555 1555 1.34 LINK C OCS B 300 N PRO B 301 1555 1555 1.35 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.33 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.42 LINK O6 MAN C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 MAN C 3 C1 MAN C 7 1555 1555 1.45 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O6 MAN C 4 C1 MAN C 6 1555 1555 1.34 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.33 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.33 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.33 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.43 LINK O3 BMA F 3 C1 MAN F 7 1555 1555 1.44 LINK O3 MAN F 4 C1 MAN F 5 1555 1555 1.45 LINK O6 MAN F 4 C1 MAN F 6 1555 1555 1.45 LINK MN MN A 508 O HOH A 679 1555 1555 2.45 LINK MN MN B 509 O HOH B 693 1555 1555 2.39 CISPEP 1 ALA A 295 PRO A 296 0 -4.40 CISPEP 2 HIS A 337 PRO A 338 0 6.53 CISPEP 3 ALA B 295 PRO B 296 0 -3.83 CISPEP 4 HIS B 337 PRO B 338 0 4.32 CRYST1 60.251 115.304 101.082 90.00 106.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016597 0.000000 0.004961 0.00000 SCALE2 0.000000 0.008673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010326 0.00000