data_8Q1L # _entry.id 8Q1L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8Q1L pdb_00008q1l 10.2210/pdb8q1l/pdb WWPDB D_1292132392 ? ? BMRB 34841 ? 10.13018/BMR34841 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-08-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8Q1L _pdbx_database_status.recvd_initial_deposition_date 2023-07-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of arthrofactin A' _pdbx_database_related.db_id 34841 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email Jose.martins@ugent.be _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Martins _pdbx_contact_author.name_mi C _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7350-2253 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kovacs, B.' 1 0000-0003-2715-5793 'Geudens, N.' 2 0000-0003-0459-7142 'Martins, J.C.' 3 0000-0001-7350-2253 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'NMR structure of the cyclic lipodepsipeptide arthrofactin A in micellar DPC solution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martins, J.C.' 1 0000-0001-7350-2253 primary 'Kovacs, B.' 2 0000-0003-2715-5793 primary 'Geudens, N.' 3 0000-0003-0459-7142 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'arthrofactin A' _entity.formula_weight 1372.646 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;1) The polypeptide chain of arthrofactin A consists of 11 amino acids. 2) The N-terminal amino acid (D-Leu) is acylated with an (R)-3-hydroxy-decanoic acid (IG8) moeity which is indicated as the first residue. 3) The side-chain of the D-Thr4 residue is of allo-configuration (2TL). 4) The depsi (ester) bond is established between the ASP12 carboxyl and allo-2TL side-chain OH group. ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(D)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(IG8)(DLE)(DAS)(2TL)(DLE)(DLE)(DSN)L(DSN)IID' _entity_poly.pdbx_seq_one_letter_code_can XLDTLLSLSIID _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 IG8 n 1 2 DLE n 1 3 DAS n 1 4 2TL n 1 5 DLE n 1 6 DLE n 1 7 DSN n 1 8 LEU n 1 9 DSN n 1 10 ILE n 1 11 ILE n 1 12 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 12 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Pseudomonas sp. MIS38' _entity_src_nat.pdbx_ncbi_taxonomy_id 91465 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain MIS38 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2TL 'D-peptide linking' . D-allothreonine ? 'C4 H9 N O3' 119.119 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 IG8 non-polymer . '(3~{R})-3-oxidanyldecanoic acid' ? 'C10 H20 O3' 188.264 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 IG8 1 1 1 IG8 IG8 A . n A 1 2 DLE 2 2 2 DLE DLE A . n A 1 3 DAS 3 3 3 DAS DAS A . n A 1 4 2TL 4 4 4 2TL 2TL A . n A 1 5 DLE 5 5 5 DLE DLE A . n A 1 6 DLE 6 6 6 DLE DLE A . n A 1 7 DSN 7 7 7 DSN DSN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 DSN 9 9 9 DSN DSN A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ASP 12 12 12 ASP ASP A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8Q1L _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8Q1L _struct.title 'NMR structure of arthrofactin A in micellar DPC solution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8Q1L _struct_keywords.text 'Non-ribosomal polypeptide, Cyclic lipodepsipeptide, Antimicrobial peptide, Biosurfactant, SURFACTANT PROTEIN' _struct_keywords.pdbx_keywords 'SURFACTANT PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8Q1L _struct_ref.pdbx_db_accession 8Q1L _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8Q1L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8Q1L _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'NMR structure calculation ensemble (1-10) + representative structure from MD simulation (11).' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id IG8 _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id DLE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 6 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id IG8 _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id DLE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 6 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A IG8 1 C ? ? ? 1_555 A DLE 2 N ? ? A IG8 1 A DLE 2 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale2 covale both ? A DLE 2 C ? ? ? 1_555 A DAS 3 N ? ? A DLE 2 A DAS 3 1_555 ? ? ? ? ? ? ? 1.282 ? ? covale3 covale both ? A DAS 3 C ? ? ? 1_555 A 2TL 4 N ? ? A DAS 3 A 2TL 4 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale4 covale both ? A 2TL 4 C ? ? ? 1_555 A DLE 5 N ? ? A 2TL 4 A DLE 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale one ? A 2TL 4 OG1 ? ? ? 1_555 A ASP 12 C ? ? A 2TL 4 A ASP 12 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A DLE 5 C ? ? ? 1_555 A DLE 6 N ? ? A DLE 5 A DLE 6 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale7 covale both ? A DLE 6 C ? ? ? 1_555 A DSN 7 N ? ? A DLE 6 A DSN 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale8 covale both ? A DSN 7 C ? ? ? 1_555 A LEU 8 N ? ? A DSN 7 A LEU 8 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale9 covale both ? A LEU 8 C ? ? ? 1_555 A DSN 9 N ? ? A LEU 8 A DSN 9 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale10 covale both ? A DSN 9 C ? ? ? 1_555 A ILE 10 N ? ? A DSN 9 A ILE 10 1_555 ? ? ? ? ? ? ? 1.258 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O A DLE 2 ? ? H A DLE 6 ? ? 1.58 2 10 O A DLE 2 ? ? H A DLE 6 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 10 DLE A 2 ? ? 132.10 39.84 2 11 DLE A 2 ? ? 135.51 38.68 # _pdbx_entry_details.entry_id 8Q1L _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # _pdbx_nmr_ensemble.entry_id 8Q1L _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8Q1L _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.3 mM NA arthrofactin A, 142.8 mM [U-2H] DPC, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1H _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ;Arthrofactin A was dissolved in the micellar solution of uniformly deuterated dodecylphosphocholine (DPC-d38). Solvent: 10 mM Na2HPO4/NaH2PO4 buffer at pH 7.4. ; # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'arthrofactin A' 1.3 ? mM NA 1 DPC 142.8 ? mM '[U-2H]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '26 (buffer only)' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H COSY' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 8Q1L _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;The lowest energy NMR structure issued from CNS was refined in an unrestrained AMBER molecular dynamics simulation (agains the ff14SB force field). Here, we modelled the interaction of a single peptide molecule with an explicit dodecylphosphocholine (DPC) micelle. The representative peptide conformation of the trajectory (=refined structure, #1) was selected using cluster analysis. Solvent model: TIP3P. Occasional too-close contacts present in the NMR structure ensemble (structures #2-#11) are fully removed during the AMBER moleculary dynamics refinement (structure #1). Side-chain outlier values for the 2TL4 residue are the results of the depsi bond. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'data analysis' AmberTools ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 processing TopSpin 3.x 'Bruker Biospin' 4 collection TopSpin 3.x 'Bruker Biospin' 5 'peak picking' 'CcpNmr Analysis' ? 'Vuister et al.' 6 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 8 'chemical shift assignment' 'CcpNmr Analysis' ? 'Vuister et al.' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2TL N N N N 1 2TL CA C N R 2 2TL CB C N R 3 2TL OG1 O N N 4 2TL CG2 C N N 5 2TL C C N N 6 2TL O O N N 7 2TL OXT O N N 8 2TL H H N N 9 2TL H2 H N N 10 2TL HA H N N 11 2TL HB H N N 12 2TL HG1 H N N 13 2TL HG21 H N N 14 2TL HG22 H N N 15 2TL HG23 H N N 16 2TL HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 DAS N N N N 34 DAS CA C N R 35 DAS C C N N 36 DAS O O N N 37 DAS CB C N N 38 DAS CG C N N 39 DAS OD1 O N N 40 DAS OD2 O N N 41 DAS OXT O N N 42 DAS H H N N 43 DAS H2 H N N 44 DAS HA H N N 45 DAS HB2 H N N 46 DAS HB3 H N N 47 DAS HD2 H N N 48 DAS HXT H N N 49 DLE N N N N 50 DLE CA C N R 51 DLE CB C N N 52 DLE CG C N N 53 DLE CD1 C N N 54 DLE CD2 C N N 55 DLE C C N N 56 DLE O O N N 57 DLE OXT O N N 58 DLE H H N N 59 DLE H2 H N N 60 DLE HA H N N 61 DLE HB2 H N N 62 DLE HB3 H N N 63 DLE HG H N N 64 DLE HD11 H N N 65 DLE HD12 H N N 66 DLE HD13 H N N 67 DLE HD21 H N N 68 DLE HD22 H N N 69 DLE HD23 H N N 70 DLE HXT H N N 71 DSN N N N N 72 DSN CA C N R 73 DSN C C N N 74 DSN O O N N 75 DSN OXT O N N 76 DSN CB C N N 77 DSN OG O N N 78 DSN H H N N 79 DSN H2 H N N 80 DSN HA H N N 81 DSN HXT H N N 82 DSN HB2 H N N 83 DSN HB3 H N N 84 DSN HG H N N 85 IG8 CA C N N 86 IG8 C C N N 87 IG8 O O N N 88 IG8 CB C N R 89 IG8 CG2 C N N 90 IG8 OG1 O N N 91 IG8 CD C N N 92 IG8 CE C N N 93 IG8 CZ C N N 94 IG8 CH C N N 95 IG8 CI C N N 96 IG8 CT C N N 97 IG8 O1 O N N 98 IG8 HA1 H N N 99 IG8 HA2 H N N 100 IG8 HB H N N 101 IG8 HG21 H N N 102 IG8 HG22 H N N 103 IG8 HG1 H N N 104 IG8 HD1 H N N 105 IG8 HD2 H N N 106 IG8 HE1 H N N 107 IG8 HE2 H N N 108 IG8 HZ1 H N N 109 IG8 HZ2 H N N 110 IG8 HH1 H N N 111 IG8 HH2 H N N 112 IG8 HI2 H N N 113 IG8 HI3 H N N 114 IG8 HI1 H N N 115 IG8 HT1 H N N 116 IG8 HT2 H N N 117 IG8 H1 H N N 118 ILE N N N N 119 ILE CA C N S 120 ILE C C N N 121 ILE O O N N 122 ILE CB C N S 123 ILE CG1 C N N 124 ILE CG2 C N N 125 ILE CD1 C N N 126 ILE OXT O N N 127 ILE H H N N 128 ILE H2 H N N 129 ILE HA H N N 130 ILE HB H N N 131 ILE HG12 H N N 132 ILE HG13 H N N 133 ILE HG21 H N N 134 ILE HG22 H N N 135 ILE HG23 H N N 136 ILE HD11 H N N 137 ILE HD12 H N N 138 ILE HD13 H N N 139 ILE HXT H N N 140 LEU N N N N 141 LEU CA C N S 142 LEU C C N N 143 LEU O O N N 144 LEU CB C N N 145 LEU CG C N N 146 LEU CD1 C N N 147 LEU CD2 C N N 148 LEU OXT O N N 149 LEU H H N N 150 LEU H2 H N N 151 LEU HA H N N 152 LEU HB2 H N N 153 LEU HB3 H N N 154 LEU HG H N N 155 LEU HD11 H N N 156 LEU HD12 H N N 157 LEU HD13 H N N 158 LEU HD21 H N N 159 LEU HD22 H N N 160 LEU HD23 H N N 161 LEU HXT H N N 162 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2TL N CA sing N N 1 2TL CA CB sing N N 2 2TL CA C sing N N 3 2TL CB OG1 sing N N 4 2TL CB CG2 sing N N 5 2TL C O doub N N 6 2TL C OXT sing N N 7 2TL N H sing N N 8 2TL N H2 sing N N 9 2TL CA HA sing N N 10 2TL CB HB sing N N 11 2TL OG1 HG1 sing N N 12 2TL CG2 HG21 sing N N 13 2TL CG2 HG22 sing N N 14 2TL CG2 HG23 sing N N 15 2TL OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 DAS N CA sing N N 32 DAS N H sing N N 33 DAS N H2 sing N N 34 DAS CA C sing N N 35 DAS CA CB sing N N 36 DAS CA HA sing N N 37 DAS C O doub N N 38 DAS C OXT sing N N 39 DAS CB CG sing N N 40 DAS CB HB2 sing N N 41 DAS CB HB3 sing N N 42 DAS CG OD1 doub N N 43 DAS CG OD2 sing N N 44 DAS OD2 HD2 sing N N 45 DAS OXT HXT sing N N 46 DLE N CA sing N N 47 DLE N H sing N N 48 DLE N H2 sing N N 49 DLE CA CB sing N N 50 DLE CA C sing N N 51 DLE CA HA sing N N 52 DLE CB CG sing N N 53 DLE CB HB2 sing N N 54 DLE CB HB3 sing N N 55 DLE CG CD1 sing N N 56 DLE CG CD2 sing N N 57 DLE CG HG sing N N 58 DLE CD1 HD11 sing N N 59 DLE CD1 HD12 sing N N 60 DLE CD1 HD13 sing N N 61 DLE CD2 HD21 sing N N 62 DLE CD2 HD22 sing N N 63 DLE CD2 HD23 sing N N 64 DLE C O doub N N 65 DLE C OXT sing N N 66 DLE OXT HXT sing N N 67 DSN N CA sing N N 68 DSN N H sing N N 69 DSN N H2 sing N N 70 DSN CA C sing N N 71 DSN CA CB sing N N 72 DSN CA HA sing N N 73 DSN C O doub N N 74 DSN C OXT sing N N 75 DSN OXT HXT sing N N 76 DSN CB OG sing N N 77 DSN CB HB2 sing N N 78 DSN CB HB3 sing N N 79 DSN OG HG sing N N 80 IG8 OG1 CB sing N N 81 IG8 C CA sing N N 82 IG8 C O doub N N 83 IG8 CA CB sing N N 84 IG8 CB CG2 sing N N 85 IG8 CG2 CD sing N N 86 IG8 CD CE sing N N 87 IG8 CE CZ sing N N 88 IG8 CZ CH sing N N 89 IG8 CH CT sing N N 90 IG8 CT CI sing N N 91 IG8 C O1 sing N N 92 IG8 CA HA1 sing N N 93 IG8 CA HA2 sing N N 94 IG8 CB HB sing N N 95 IG8 CG2 HG21 sing N N 96 IG8 CG2 HG22 sing N N 97 IG8 OG1 HG1 sing N N 98 IG8 CD HD1 sing N N 99 IG8 CD HD2 sing N N 100 IG8 CE HE1 sing N N 101 IG8 CE HE2 sing N N 102 IG8 CZ HZ1 sing N N 103 IG8 CZ HZ2 sing N N 104 IG8 CH HH1 sing N N 105 IG8 CH HH2 sing N N 106 IG8 CI HI2 sing N N 107 IG8 CI HI3 sing N N 108 IG8 CI HI1 sing N N 109 IG8 CT HT1 sing N N 110 IG8 CT HT2 sing N N 111 IG8 O1 H1 sing N N 112 ILE N CA sing N N 113 ILE N H sing N N 114 ILE N H2 sing N N 115 ILE CA C sing N N 116 ILE CA CB sing N N 117 ILE CA HA sing N N 118 ILE C O doub N N 119 ILE C OXT sing N N 120 ILE CB CG1 sing N N 121 ILE CB CG2 sing N N 122 ILE CB HB sing N N 123 ILE CG1 CD1 sing N N 124 ILE CG1 HG12 sing N N 125 ILE CG1 HG13 sing N N 126 ILE CG2 HG21 sing N N 127 ILE CG2 HG22 sing N N 128 ILE CG2 HG23 sing N N 129 ILE CD1 HD11 sing N N 130 ILE CD1 HD12 sing N N 131 ILE CD1 HD13 sing N N 132 ILE OXT HXT sing N N 133 LEU N CA sing N N 134 LEU N H sing N N 135 LEU N H2 sing N N 136 LEU CA C sing N N 137 LEU CA CB sing N N 138 LEU CA HA sing N N 139 LEU C O doub N N 140 LEU C OXT sing N N 141 LEU CB CG sing N N 142 LEU CB HB2 sing N N 143 LEU CB HB3 sing N N 144 LEU CG CD1 sing N N 145 LEU CG CD2 sing N N 146 LEU CG HG sing N N 147 LEU CD1 HD11 sing N N 148 LEU CD1 HD12 sing N N 149 LEU CD1 HD13 sing N N 150 LEU CD2 HD21 sing N N 151 LEU CD2 HD22 sing N N 152 LEU CD2 HD23 sing N N 153 LEU OXT HXT sing N N 154 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Research Foundation - Flanders (FWO)' Belgium 'EOS project G0G3118N (EOS ID 30650620)' 1 'Gatsby Charitable Foundation' ? ? 2 'Ghent University Special Research Fund (BOF)' Belgium 'BOF.DOC.2016.0009.01 (01D07416)' 3 'Ghent University Special Research Fund (BOF)' Belgium 'BOF19-GOA-028 (01G02819)' 4 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details 'Prodigy Cryoprobe' # _atom_sites.entry_id 8Q1L _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_