HEADER PEPTIDE BINDING PROTEIN 01-AUG-23 8Q1S TITLE PATHOGENIC MUTATIONS OF HUMAN PHOSPHORYLATION SITES AFFECT PROTEIN- TITLE 2 PROTEIN INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN EPSILON; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 14-3-3E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 1; COMPND 8 CHAIN: C, P; COMPND 9 SYNONYM: OCULAR DEVELOPMENT-ASSOCIATED GENE PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: GATAD1, ODAG; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 14-3-3, GATAD1, PROTEIN-PROTEIN INTERACTION, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,O.DAUMKE,T.RRUSTEMI,M.SELBACH REVDAT 3 13-NOV-24 8Q1S 1 REMARK REVDAT 2 24-APR-24 8Q1S 1 JRNL REVDAT 1 21-FEB-24 8Q1S 0 JRNL AUTH T.RRUSTEMI,K.MEYER,Y.ROSKE,B.UYAR,A.AKALIN,K.IMAMI, JRNL AUTH 2 Y.ISHIHAMA,O.DAUMKE,M.SELBACH JRNL TITL PATHOGENIC MUTATIONS OF HUMAN PHOSPHORYLATION SITES AFFECT JRNL TITL 2 PROTEIN-PROTEIN INTERACTIONS. JRNL REF NAT COMMUN V. 15 3146 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38605029 JRNL DOI 10.1038/S41467-024-46794-8 REMARK 2 REMARK 2 RESOLUTION. 3.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 608 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.92000 REMARK 3 B22 (A**2) : 15.92000 REMARK 3 B33 (A**2) : -31.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.351 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3978 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3806 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5361 ; 1.132 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8788 ; 1.045 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 4.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;26.475 ;22.903 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;14.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;11.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.035 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4429 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1954 ; 1.766 ;11.203 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1953 ; 1.758 ;11.201 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2436 ; 3.097 ;16.791 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2437 ; 3.098 ;16.794 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2023 ; 1.358 ;11.263 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2021 ; 1.354 ;11.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2924 ; 2.444 ;16.829 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4409 ; 5.062 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4410 ; 5.065 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3642 ; 0.47 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 3642 ; 10.08 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 152 ; 0.26 ; 0.50 REMARK 3 MEDIUM THERMAL 2 B (A**2): 152 ; 11.23 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1650 -37.6137 22.0959 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.0967 REMARK 3 T33: 0.0881 T12: -0.0741 REMARK 3 T13: -0.0434 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.5846 L22: 0.4899 REMARK 3 L33: 1.0467 L12: -0.7998 REMARK 3 L13: -0.3442 L23: 0.4428 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: -0.2024 S13: 0.2073 REMARK 3 S21: -0.0027 S22: 0.1474 S23: -0.1068 REMARK 3 S31: -0.2066 S32: 0.1428 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 34 P 43 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0434 REMARK 3 T33: 0.0434 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5224 -36.6972 23.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.1415 REMARK 3 T33: 0.2351 T12: 0.0293 REMARK 3 T13: 0.0747 T23: -0.1180 REMARK 3 L TENSOR REMARK 3 L11: 1.9199 L22: 0.3923 REMARK 3 L33: 0.5750 L12: 0.0673 REMARK 3 L13: 0.7629 L23: -0.2469 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.3539 S13: 0.2909 REMARK 3 S21: 0.0062 S22: -0.0179 S23: 0.2109 REMARK 3 S31: 0.0794 S32: -0.1812 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 34 C 45 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0434 REMARK 3 T33: 0.0434 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Q1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22972 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.230 REMARK 200 RESOLUTION RANGE LOW (A) : 49.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.39 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.35 M NABR, 0.1 M REMARK 280 BISTRIS-PROPANE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 61.89000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.73221 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 83.40000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 61.89000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.73221 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 83.40000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 61.89000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.73221 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 83.40000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 61.89000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.73221 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 83.40000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 61.89000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.73221 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.40000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 61.89000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.73221 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.40000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.46442 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 166.80000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 71.46442 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 166.80000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 71.46442 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 166.80000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 71.46442 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 166.80000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 71.46442 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 166.80000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 71.46442 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 166.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 235 REMARK 465 GLN A 236 REMARK 465 GLY A 237 REMARK 465 ASP A 238 REMARK 465 GLY A 239 REMARK 465 GLU A 240 REMARK 465 GLU A 241 REMARK 465 GLN A 242 REMARK 465 ASN A 243 REMARK 465 LYS A 244 REMARK 465 GLU A 245 REMARK 465 ALA A 246 REMARK 465 LEU A 247 REMARK 465 GLN A 248 REMARK 465 ASP A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 ASP A 252 REMARK 465 GLU A 253 REMARK 465 ASN A 254 REMARK 465 GLN A 255 REMARK 465 MET B 1 REMARK 465 GLN B 236 REMARK 465 GLY B 237 REMARK 465 ASP B 238 REMARK 465 GLY B 239 REMARK 465 GLU B 240 REMARK 465 GLU B 241 REMARK 465 GLN B 242 REMARK 465 ASN B 243 REMARK 465 LYS B 244 REMARK 465 GLU B 245 REMARK 465 ALA B 246 REMARK 465 LEU B 247 REMARK 465 GLN B 248 REMARK 465 ASP B 249 REMARK 465 VAL B 250 REMARK 465 GLU B 251 REMARK 465 ASP B 252 REMARK 465 GLU B 253 REMARK 465 ASN B 254 REMARK 465 GLN B 255 REMARK 465 LEU C 92 REMARK 465 ARG C 93 REMARK 465 ASN C 94 REMARK 465 LEU P 92 REMARK 465 ARG P 93 REMARK 465 ASN P 94 REMARK 465 LYS P 105 REMARK 465 LYS P 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 196 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 75.82 -103.84 REMARK 500 ARG B 19 76.07 -104.81 REMARK 500 ASP B 34 -15.81 82.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 8Q1S A 1 255 UNP P62258 1433E_HUMAN 1 255 DBREF 8Q1S B 1 255 UNP P62258 1433E_HUMAN 1 255 DBREF 8Q1S C 92 106 UNP Q8WUU5 GATD1_HUMAN 95 109 DBREF 8Q1S P 92 106 UNP Q8WUU5 GATD1_HUMAN 95 109 SEQRES 1 A 255 MET ASP ASP ARG GLU ASP LEU VAL TYR GLN ALA LYS LEU SEQRES 2 A 255 ALA GLU GLN ALA GLU ARG TYR ASP GLU MET VAL GLU SER SEQRES 3 A 255 MET LYS LYS VAL ALA GLY MET ASP VAL GLU LEU THR VAL SEQRES 4 A 255 GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL SEQRES 5 A 255 ILE GLY ALA ARG ARG ALA SER TRP ARG ILE ILE SER SER SEQRES 6 A 255 ILE GLU GLN LYS GLU GLU ASN LYS GLY GLY GLU ASP LYS SEQRES 7 A 255 LEU LYS MET ILE ARG GLU TYR ARG GLN MET VAL GLU THR SEQRES 8 A 255 GLU LEU LYS LEU ILE CYS CYS ASP ILE LEU ASP VAL LEU SEQRES 9 A 255 ASP LYS HIS LEU ILE PRO ALA ALA ASN THR GLY GLU SER SEQRES 10 A 255 LYS VAL PHE TYR TYR LYS MET LYS GLY ASP TYR HIS ARG SEQRES 11 A 255 TYR LEU ALA GLU PHE ALA THR GLY ASN ASP ARG LYS GLU SEQRES 12 A 255 ALA ALA GLU ASN SER LEU VAL ALA TYR LYS ALA ALA SER SEQRES 13 A 255 ASP ILE ALA MET THR GLU LEU PRO PRO THR HIS PRO ILE SEQRES 14 A 255 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 A 255 GLU ILE LEU ASN SER PRO ASP ARG ALA CYS ARG LEU ALA SEQRES 16 A 255 LYS ALA ALA PHE ASP ASP ALA ILE ALA GLU LEU ASP THR SEQRES 17 A 255 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 A 255 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 A 255 MET GLN GLY ASP GLY GLU GLU GLN ASN LYS GLU ALA LEU SEQRES 20 A 255 GLN ASP VAL GLU ASP GLU ASN GLN SEQRES 1 B 255 MET ASP ASP ARG GLU ASP LEU VAL TYR GLN ALA LYS LEU SEQRES 2 B 255 ALA GLU GLN ALA GLU ARG TYR ASP GLU MET VAL GLU SER SEQRES 3 B 255 MET LYS LYS VAL ALA GLY MET ASP VAL GLU LEU THR VAL SEQRES 4 B 255 GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL SEQRES 5 B 255 ILE GLY ALA ARG ARG ALA SER TRP ARG ILE ILE SER SER SEQRES 6 B 255 ILE GLU GLN LYS GLU GLU ASN LYS GLY GLY GLU ASP LYS SEQRES 7 B 255 LEU LYS MET ILE ARG GLU TYR ARG GLN MET VAL GLU THR SEQRES 8 B 255 GLU LEU LYS LEU ILE CYS CYS ASP ILE LEU ASP VAL LEU SEQRES 9 B 255 ASP LYS HIS LEU ILE PRO ALA ALA ASN THR GLY GLU SER SEQRES 10 B 255 LYS VAL PHE TYR TYR LYS MET LYS GLY ASP TYR HIS ARG SEQRES 11 B 255 TYR LEU ALA GLU PHE ALA THR GLY ASN ASP ARG LYS GLU SEQRES 12 B 255 ALA ALA GLU ASN SER LEU VAL ALA TYR LYS ALA ALA SER SEQRES 13 B 255 ASP ILE ALA MET THR GLU LEU PRO PRO THR HIS PRO ILE SEQRES 14 B 255 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 B 255 GLU ILE LEU ASN SER PRO ASP ARG ALA CYS ARG LEU ALA SEQRES 16 B 255 LYS ALA ALA PHE ASP ASP ALA ILE ALA GLU LEU ASP THR SEQRES 17 B 255 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 B 255 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SER ASP SEQRES 19 B 255 MET GLN GLY ASP GLY GLU GLU GLN ASN LYS GLU ALA LEU SEQRES 20 B 255 GLN ASP VAL GLU ASP GLU ASN GLN SEQRES 1 C 15 LEU ARG ASN THR LYS TYR LYS SEP ALA PRO ALA ALA GLU SEQRES 2 C 15 LYS LYS SEQRES 1 P 15 LEU ARG ASN THR LYS TYR LYS SEP ALA PRO ALA ALA GLU SEQRES 2 P 15 LYS LYS MODRES 8Q1S SEP C 99 SER MODIFIED RESIDUE MODRES 8Q1S SEP P 99 SER MODIFIED RESIDUE HET SEP C 99 10 HET SEP P 99 10 HET BR A 301 1 HET EDO B 301 4 HET EDO B 302 4 HET NA P 201 1 HETNAM SEP PHOSPHOSERINE HETNAM BR BROMIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 BR BR 1- FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 NA NA 1+ FORMUL 9 HOH *12(H2 O) HELIX 1 AA1 ASP A 2 ALA A 17 1 16 HELIX 2 AA2 ARG A 19 MET A 33 1 15 HELIX 3 AA3 THR A 38 GLY A 74 1 37 HELIX 4 AA4 GLY A 75 HIS A 107 1 33 HELIX 5 AA5 HIS A 107 ALA A 112 1 6 HELIX 6 AA6 THR A 114 ALA A 136 1 23 HELIX 7 AA7 THR A 137 GLU A 162 1 26 HELIX 8 AA8 HIS A 167 ILE A 184 1 18 HELIX 9 AA9 SER A 187 ALA A 204 1 18 HELIX 10 AB1 SER A 213 THR A 232 1 20 HELIX 11 AB2 ASP B 3 ALA B 17 1 15 HELIX 12 AB3 ARG B 19 MET B 33 1 15 HELIX 13 AB4 THR B 38 GLY B 74 1 37 HELIX 14 AB5 GLY B 75 HIS B 107 1 33 HELIX 15 AB6 HIS B 107 ALA B 112 1 6 HELIX 16 AB7 THR B 114 ALA B 136 1 23 HELIX 17 AB8 GLY B 138 LEU B 163 1 26 HELIX 18 AB9 HIS B 167 ILE B 184 1 18 HELIX 19 AC1 SER B 187 GLU B 205 1 19 HELIX 20 AC2 LEU B 206 LEU B 209 5 4 HELIX 21 AC3 SER B 210 MET B 235 1 26 LINK C LYS C 98 N SEP C 99 1555 1555 1.34 LINK C SEP C 99 N ALA C 100 1555 1555 1.34 LINK C LYS P 98 N SEP P 99 1555 1555 1.34 LINK C SEP P 99 N ALA P 100 1555 1555 1.34 LINK O LYS P 96 NA NA P 201 1555 1555 2.85 CRYST1 123.780 123.780 250.200 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008079 0.004664 0.000000 0.00000 SCALE2 0.000000 0.009329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003997 0.00000