HEADER LYASE 08-AUG-23 8Q58 TITLE CRYSTAL STRUCTURE OF METAL-DEPENDENT CLASSII SULFOFRUCTOSEPHOSPHATE TITLE 2 ALDOLASE (SFPA) FROM HAFNIA PARALVEI HPSQIA-ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAFNIA PARALVEI; SOURCE 3 ORGANISM_TAXID: 546367; SOURCE 4 GENE: KBAY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS METAL-DEPENDENT, ALDOLASE, SULFOQUINOVOSE, SULFOFRUCTOSE PHOSPHATE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,G.J.DAVIES REVDAT 3 22-NOV-23 8Q58 1 JRNL REVDAT 2 01-NOV-23 8Q58 1 REMARK REVDAT 1 25-OCT-23 8Q58 0 JRNL AUTH M.SHARMA,A.KAUR,N.MADIEDO SOLER,J.P.LINGFORD,R.EPA, JRNL AUTH 2 E.D.GODDARD-BORGER,G.J.DAVIES,S.J.WILLIAMS JRNL TITL DEFINING THE MOLECULAR ARCHITECTURE, METAL DEPENDENCE, AND JRNL TITL 2 DISTRIBUTION OF METAL-DEPENDENT CLASS II JRNL TITL 3 SULFOFRUCTOSE-1-PHOSPHATE ALDOLASES. JRNL REF J.BIOL.CHEM. V. 299 05338 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37838169 JRNL DOI 10.1016/J.JBC.2023.105338 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.942 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2077 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1994 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2815 ; 1.658 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4581 ; 0.570 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 8.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;14.306 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2449 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 3.204 ; 3.265 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1083 ; 3.201 ; 3.265 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1352 ; 4.275 ; 5.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1353 ; 4.277 ; 5.847 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 994 ; 4.131 ; 3.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 995 ; 4.129 ; 3.539 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1457 ; 5.894 ; 6.385 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2318 ; 6.735 ;30.910 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2301 ; 6.712 ;30.750 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Q58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292131462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 63.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE DIBASIC REMARK 280 MONOHYDRATE AND 20% W/V PEG (POLYETHYLENE GLYCOL) 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.24500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.40250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.24500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.40250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.24500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.40250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.16600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.24500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.40250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.33200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.49000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 60.33200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 88.49000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 THR A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 181 REMARK 465 VAL A 182 REMARK 465 TYR A 183 REMARK 465 LYS A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 88 CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LEU A 153 CG CD1 CD2 REMARK 470 PRO A 187 CG CD REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 GLN A 241 CD OE1 NE2 REMARK 470 THR A 248 OG1 CG2 REMARK 470 ASN A 249 CG OD1 ND2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LEU A 285 CG CD1 CD2 REMARK 470 GLN A 286 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 36.51 -76.45 REMARK 500 ASN A 27 -165.98 -173.56 REMARK 500 ASP A 232 -69.95 -136.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 264 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 GLU A 134 OE1 107.0 REMARK 620 3 HIS A 180 NE2 117.2 133.4 REMARK 620 4 HIS A 208 ND1 92.7 96.0 95.8 REMARK 620 5 HOH A 434 O 85.6 77.3 91.7 172.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 83 NE2 18.8 REMARK 620 N 1 DBREF1 8Q58 A 1 287 UNP A0A2A2MA06_9GAMM DBREF2 8Q58 A A0A2A2MA06 1 287 SEQADV 8Q58 MET A -19 UNP A0A2A2MA0 INITIATING METHIONINE SEQADV 8Q58 GLY A -18 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -17 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -16 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -15 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -14 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -13 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -12 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -11 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A -10 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -9 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -8 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 GLY A -7 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 LEU A -6 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 VAL A -5 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 PRO A -4 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 ARG A -3 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 GLY A -2 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 SER A -1 UNP A0A2A2MA0 EXPRESSION TAG SEQADV 8Q58 HIS A 0 UNP A0A2A2MA0 EXPRESSION TAG SEQRES 1 A 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 307 LEU VAL PRO ARG GLY SER HIS MET PRO TYR VAL SER GLY SEQRES 3 A 307 LYS THR MET ILE GLN GLN ALA TRP LYS HIS GLY TYR ALA SEQRES 4 A 307 ILE GLY ALA PHE SER ALA HIS ASN ALA GLU THR VAL ARG SEQRES 5 A 307 ALA ILE LEU LEU ALA ALA GLN GLU GLU GLN SER PRO VAL SEQRES 6 A 307 MET ILE GLN VAL GLY GLN LYS VAL ILE SER VAL MET GLY SEQRES 7 A 307 LEU LYS PRO MET LYS GLU ILE ILE ASP ALA PHE MET HIS SEQRES 8 A 307 ASP ILE THR VAL PRO VAL CYS ILE HIS LEU ASP HIS SER SEQRES 9 A 307 ARG SER PHE GLU GLN THR MET GLN ALA ILE GLN CYS GLY SEQRES 10 A 307 PHE GLN SER VAL MET PHE ASP GLY SER HIS LEU SER PHE SEQRES 11 A 307 GLU GLU ASN VAL ARG ILE THR ARG ALA ALA SER GLU VAL SEQRES 12 A 307 ALA HIS ALA LEU ASN ILE GLY MET GLU GLY GLU ILE GLY SEQRES 13 A 307 LYS ILE GLY GLY THR GLU ASP ASP ILE SER VAL ASP GLU SEQRES 14 A 307 LYS ASP ALA LEU ILE THR SER CYS ASP GLU ALA LEU ARG SEQRES 15 A 307 PHE SER GLU GLY THR ASP VAL ASP TYR LEU ALA VAL SER SEQRES 16 A 307 ILE GLY THR ALA HIS GLY VAL TYR LYS GLN GLU PRO LYS SEQRES 17 A 307 LEU ALA PHE GLY ARG LEU GLN GLU ILE ARG GLU ILE VAL SEQRES 18 A 307 LYS LYS PRO ILE VAL LEU HIS GLY GLY SER GLY VAL PRO SEQRES 19 A 307 ASP ASP GLN ILE ARG GLN ALA ILE ALA LEU GLY VAL ALA SEQRES 20 A 307 LYS VAL ASN VAL ASP THR GLU LEU ARG GLN ALA PHE THR SEQRES 21 A 307 GLN GLY LEU CYS GLU VAL LEU THR ASN ASP PRO GLU GLU SEQRES 22 A 307 TYR ALA LEU ALA VAL SER LEU GLY HIS GLY ARG ASP VAL SEQRES 23 A 307 MET LYS GLU LYS VAL ILE GLU LYS ILE ARG LEU PHE GLY SEQRES 24 A 307 SER ASN GLY LYS ALA LEU GLN PHE HET ZN A 301 1 HET ZN A 302 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 SER A 5 HIS A 16 1 12 HELIX 2 AA2 ASN A 27 GLU A 41 1 15 HELIX 3 AA3 GLY A 50 GLY A 58 1 9 HELIX 4 AA4 GLY A 58 MET A 70 1 13 HELIX 5 AA5 SER A 86 CYS A 96 1 11 HELIX 6 AA6 SER A 109 LEU A 127 1 19 HELIX 7 AA7 SER A 156 ASP A 168 1 13 HELIX 8 AA8 ALA A 190 LYS A 202 1 13 HELIX 9 AA9 GLY A 209 VAL A 213 5 5 HELIX 10 AB1 PRO A 214 LEU A 224 1 11 HELIX 11 AB2 ASP A 232 ASP A 250 1 19 HELIX 12 AB3 ALA A 255 GLY A 279 1 25 HELIX 13 AB4 GLY A 282 PHE A 287 5 6 SHEET 1 AA1 9 ILE A 20 SER A 24 0 SHEET 2 AA1 9 VAL A 45 VAL A 49 1 O GLN A 48 N PHE A 23 SHEET 3 AA1 9 VAL A 77 SER A 84 1 O HIS A 80 N ILE A 47 SHEET 4 AA1 9 SER A 100 PHE A 103 1 O SER A 100 N LEU A 81 SHEET 5 AA1 9 GLY A 130 GLU A 134 1 O GLU A 132 N VAL A 101 SHEET 6 AA1 9 TYR A 171 ALA A 173 1 O ALA A 173 N GLY A 133 SHEET 7 AA1 9 ILE A 205 LEU A 207 1 O VAL A 206 N LEU A 172 SHEET 8 AA1 9 VAL A 226 VAL A 231 1 O LYS A 228 N LEU A 207 SHEET 9 AA1 9 ILE A 20 SER A 24 1 N SER A 24 O VAL A 231 LINK NE2AHIS A 83 ZN ZN A 301 1555 1555 2.11 LINK NE2AHIS A 83 ZN ZN A 302 1555 1555 2.64 LINK NE2BHIS A 83 ZN ZN A 302 1555 1555 1.85 LINK OE1 GLU A 134 ZN ZN A 301 1555 1555 1.95 LINK NE2 HIS A 180 ZN ZN A 301 1555 1555 2.18 LINK ND1AHIS A 208 ZN ZN A 301 1555 1555 2.20 LINK ZN ZN A 301 O HOH A 434 1555 1555 2.60 CRYST1 60.332 88.490 126.805 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007886 0.00000 TER 2038 PHE A 287 HETATM 2039 ZN ZN A 301 23.481 23.245 25.219 0.80 25.98 ZN HETATM 2040 ZN ZN A 302 23.300 22.186 22.029 0.20 34.93 ZN HETATM 2041 O HOH A 401 15.990 36.532 39.922 1.00 52.45 O HETATM 2042 O HOH A 402 18.044 19.387 28.047 1.00 41.11 O HETATM 2043 O HOH A 403 35.571 23.943 25.869 1.00 49.03 O HETATM 2044 O HOH A 404 32.463 32.406 40.158 1.00 45.32 O HETATM 2045 O HOH A 405 3.070 21.142 10.693 1.00 41.10 O HETATM 2046 O HOH A 406 28.173 39.505 6.608 1.00 43.47 O HETATM 2047 O HOH A 407 25.680 27.040 37.699 1.00 39.07 O HETATM 2048 O HOH A 408 28.372 19.307 14.379 1.00 47.09 O HETATM 2049 O HOH A 409 12.611 35.657 33.362 1.00 30.96 O HETATM 2050 O HOH A 410 28.858 24.909 35.846 1.00 42.94 O HETATM 2051 O HOH A 411 29.214 24.101 24.848 1.00 36.64 O HETATM 2052 O HOH A 412 35.091 25.928 16.917 1.00 43.13 O HETATM 2053 O HOH A 413 15.145 39.685 31.383 1.00 36.59 O HETATM 2054 O HOH A 414 33.516 37.216 1.190 1.00 41.23 O HETATM 2055 O HOH A 415 27.339 37.419 38.098 1.00 32.05 O HETATM 2056 O HOH A 416 1.849 24.181 20.084 1.00 42.81 O HETATM 2057 O HOH A 417 28.604 38.503 2.133 1.00 30.98 O HETATM 2058 O HOH A 418 11.556 13.759 13.461 1.00 51.08 O HETATM 2059 O HOH A 419 20.377 43.132 27.815 1.00 35.55 O HETATM 2060 O HOH A 420 1.809 25.574 13.858 1.00 44.11 O HETATM 2061 O HOH A 421 9.083 36.356 35.209 1.00 51.12 O HETATM 2062 O HOH A 422 17.019 25.431 43.028 1.00 42.73 O HETATM 2063 O HOH A 423 25.775 23.446 15.373 1.00 39.32 O HETATM 2064 O HOH A 424 24.515 35.347 -4.421 1.00 35.11 O HETATM 2065 O HOH A 425 22.766 36.528 -2.275 1.00 37.56 O HETATM 2066 O HOH A 426 30.165 22.617 0.000 0.50 29.05 O HETATM 2067 O HOH A 427 23.755 40.263 36.165 1.00 38.42 O HETATM 2068 O HOH A 428 38.288 29.177 5.814 1.00 42.23 O HETATM 2069 O HOH A 429 18.682 17.197 30.710 1.00 38.15 O HETATM 2070 O HOH A 430 17.292 19.950 19.974 1.00 32.19 O HETATM 2071 O HOH A 431 28.421 41.407 33.011 1.00 29.96 O HETATM 2072 O HOH A 432 29.343 24.344 28.218 1.00 35.09 O HETATM 2073 O HOH A 433 22.442 46.988 25.764 1.00 30.27 O HETATM 2074 O HOH A 434 25.750 23.042 26.471 1.00 32.18 O HETATM 2075 O HOH A 435 25.657 22.169 29.019 1.00 36.70 O HETATM 2076 O HOH A 436 1.116 17.300 22.129 1.00 42.83 O HETATM 2077 O HOH A 437 28.854 36.382 0.383 1.00 26.30 O HETATM 2078 O HOH A 438 25.049 30.806 29.065 1.00 23.02 O HETATM 2079 O HOH A 439 12.112 36.862 25.563 1.00 29.00 O HETATM 2080 O HOH A 440 7.076 15.866 10.373 1.00 39.40 O HETATM 2081 O HOH A 441 23.419 22.492 18.599 1.00 49.11 O HETATM 2082 O HOH A 442 30.969 11.853 -6.494 1.00 48.31 O HETATM 2083 O HOH A 443 33.607 29.799 36.528 1.00 30.43 O HETATM 2084 O HOH A 444 15.940 23.473 27.441 1.00 27.95 O HETATM 2085 O HOH A 445 19.919 22.427 27.203 1.00 32.77 O HETATM 2086 O HOH A 446 36.284 32.562 14.856 1.00 42.74 O HETATM 2087 O HOH A 447 2.421 26.842 26.942 1.00 40.57 O HETATM 2088 O HOH A 448 21.566 22.589 30.302 1.00 34.02 O HETATM 2089 O HOH A 449 3.063 21.526 19.239 1.00 41.93 O HETATM 2090 O HOH A 450 17.966 34.718 -7.836 1.00 46.05 O HETATM 2091 O HOH A 451 8.361 26.397 28.781 1.00 33.21 O HETATM 2092 O HOH A 452 21.361 19.992 20.241 1.00 41.96 O HETATM 2093 O HOH A 453 2.194 15.109 21.200 1.00 38.88 O HETATM 2094 O HOH A 454 9.580 37.753 30.567 1.00 45.28 O HETATM 2095 O HOH A 455 20.018 36.747 39.149 1.00 44.94 O HETATM 2096 O HOH A 456 9.556 9.954 16.819 1.00 54.59 O HETATM 2097 O HOH A 457 26.902 24.457 12.088 1.00 26.49 O HETATM 2098 O HOH A 458 -1.709 22.038 33.701 1.00 51.87 O HETATM 2099 O HOH A 459 23.548 22.817 -3.833 1.00 43.19 O HETATM 2100 O HOH A 460 21.955 27.326 20.260 1.00 24.77 O HETATM 2101 O HOH A 461 23.983 40.193 8.175 1.00 34.73 O HETATM 2102 O HOH A 462 23.595 19.403 9.981 1.00 34.82 O HETATM 2103 O HOH A 463 28.766 44.355 27.500 1.00 23.09 O HETATM 2104 O HOH A 464 16.347 17.907 16.917 1.00 36.75 O HETATM 2105 O HOH A 465 11.514 26.503 11.349 1.00 29.27 O HETATM 2106 O HOH A 466 30.662 24.480 22.585 1.00 32.21 O HETATM 2107 O HOH A 467 4.285 27.944 22.570 1.00 35.93 O HETATM 2108 O HOH A 468 28.213 43.813 10.037 1.00 41.64 O HETATM 2109 O HOH A 469 26.997 19.413 -5.295 1.00 35.24 O HETATM 2110 O HOH A 470 36.434 30.798 16.933 1.00 29.74 O HETATM 2111 O HOH A 471 12.358 34.284 -4.884 1.00 55.97 O HETATM 2112 O HOH A 472 33.593 28.576 21.481 1.00 28.60 O HETATM 2113 O HOH A 473 17.691 21.505 26.124 1.00 32.03 O HETATM 2114 O HOH A 474 6.478 27.812 21.248 1.00 30.31 O HETATM 2115 O HOH A 475 15.848 42.069 24.491 1.00 41.74 O HETATM 2116 O HOH A 476 32.247 21.176 7.294 1.00 33.74 O HETATM 2117 O HOH A 477 2.703 27.413 31.664 1.00 46.00 O HETATM 2118 O HOH A 478 29.528 17.797 -10.337 1.00 42.73 O HETATM 2119 O HOH A 479 20.530 35.081 41.761 1.00 43.76 O HETATM 2120 O HOH A 480 9.547 36.805 26.811 1.00 35.95 O HETATM 2121 O HOH A 481 26.464 27.791 35.196 1.00 29.67 O HETATM 2122 O HOH A 482 25.153 25.400 34.492 1.00 35.69 O HETATM 2123 O HOH A 483 31.539 20.565 9.911 1.00 33.41 O HETATM 2124 O HOH A 484 8.250 29.079 27.929 1.00 28.53 O HETATM 2125 O HOH A 485 18.816 13.581 24.346 1.00 52.88 O HETATM 2126 O HOH A 486 2.756 24.026 16.479 1.00 46.16 O HETATM 2127 O HOH A 487 35.693 36.098 12.522 1.00 41.65 O HETATM 2128 O HOH A 488 34.274 30.955 28.737 1.00 46.86 O HETATM 2129 O HOH A 489 13.303 17.128 16.738 1.00 39.79 O HETATM 2130 O HOH A 490 15.347 39.831 27.352 1.00 41.08 O HETATM 2131 O HOH A 491 36.059 33.939 10.738 1.00 30.07 O HETATM 2132 O HOH A 492 14.697 42.190 12.454 1.00 34.62 O HETATM 2133 O HOH A 493 2.176 24.564 4.967 1.00 50.06 O HETATM 2134 O HOH A 494 37.930 38.542 6.547 1.00 52.25 O HETATM 2135 O HOH A 495 12.444 26.163 42.109 1.00 41.53 O HETATM 2136 O HOH A 496 36.555 31.596 12.491 1.00 28.78 O HETATM 2137 O HOH A 497 28.209 23.699 18.250 1.00 27.59 O HETATM 2138 O HOH A 498 3.144 26.449 3.640 1.00 54.34 O HETATM 2139 O HOH A 499 2.949 33.809 25.449 1.00 57.23 O HETATM 2140 O HOH A 500 36.690 29.247 25.003 1.00 55.94 O HETATM 2141 O HOH A 501 19.881 16.445 15.204 1.00 41.41 O HETATM 2142 O HOH A 502 22.339 21.746 16.734 1.00 38.80 O HETATM 2143 O HOH A 503 11.541 23.881 40.668 1.00 44.71 O HETATM 2144 O HOH A 504 28.898 22.946 13.762 1.00 29.05 O HETATM 2145 O HOH A 505 35.109 34.001 27.357 1.00 34.31 O HETATM 2146 O HOH A 506 34.311 30.758 38.939 1.00 47.19 O HETATM 2147 O HOH A 507 8.512 17.515 35.290 1.00 35.60 O HETATM 2148 O HOH A 508 29.214 21.769 16.617 1.00 44.00 O HETATM 2149 O HOH A 509 34.121 40.770 10.908 1.00 45.57 O HETATM 2150 O HOH A 510 4.088 21.800 16.709 1.00 43.83 O HETATM 2151 O HOH A 511 29.728 17.286 12.707 1.00 45.40 O HETATM 2152 O HOH A 512 21.877 19.916 -6.335 1.00 46.64 O HETATM 2153 O HOH A 513 26.971 21.028 21.907 1.00 44.76 O HETATM 2154 O HOH A 514 20.699 19.856 29.280 1.00 41.43 O HETATM 2155 O HOH A 515 27.354 21.427 24.825 1.00 42.47 O HETATM 2156 O HOH A 516 23.627 18.791 21.333 1.00 56.88 O HETATM 2157 O HOH A 517 22.427 33.837 -8.706 1.00 36.52 O HETATM 2158 O HOH A 518 26.197 39.709 36.742 1.00 39.70 O HETATM 2159 O HOH A 519 24.165 20.324 -4.781 1.00 37.27 O HETATM 2160 O HOH A 520 37.080 35.686 6.814 1.00 33.95 O HETATM 2161 O HOH A 521 29.247 22.649 20.626 1.00 36.31 O HETATM 2162 O HOH A 522 28.953 44.736 30.615 1.00 40.69 O CONECT 645 2039 2040 CONECT 646 2040 CONECT 1036 2039 CONECT 1278 2039 CONECT 1451 2039 CONECT 2039 645 1036 1278 1451 CONECT 2039 2074 CONECT 2040 645 646 CONECT 2074 2039 MASTER 412 0 2 13 9 0 0 6 2126 1 9 24 END