HEADER HYDROLASE 09-AUG-23 8Q5M TITLE N-TERMINAL DOMAIN OF RESTRICTION ENDONUCLEASE ECO15I IN THE ABSENCE OF TITLE 2 DNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESTRICTION ENDONUCLEASE (ECO15I); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: EIL45146; SOURCE 5 GENE: EPS97_24605, GIB53_21535, IT029_004930, J5U05_004825; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS METHYLATION-DEPENDENT RESTRICTION ENZYME, DNA METHYLATION, KEYWDS 2 RESTRICTION OF MODIFIED PHAGE DNA, BISI FAMILY ENDONUCLEASES, 5- KEYWDS 3 METHYLCYTOSINE RECOGNITION, TYPE II RESTRICTION ENDONUCLEASES, KEYWDS 4 MODIFICATION-SPECIFIC RESTRICTION ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.RAFALSKI,K.KRAKOWSKA,M.BOCHTLER REVDAT 3 04-SEP-24 8Q5M 1 JRNL REVDAT 2 07-AUG-24 8Q5M 1 JRNL REVDAT 1 17-JUL-24 8Q5M 0 JRNL AUTH K.SZAFRAN,D.RAFALSKI,K.SKOWRONEK,M.WOJCIECHOWSKI, JRNL AUTH 2 A.A.KAZRANI,M.GILSKI,S.Y.XU,M.BOCHTLER JRNL TITL STRUCTURAL ANALYSIS OF THE BISI FAMILY OF MODIFICATION JRNL TITL 2 DEPENDENT RESTRICTION ENDONUCLEASES. JRNL REF NUCLEIC ACIDS RES. V. 52 9103 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39041409 JRNL DOI 10.1093/NAR/GKAE634 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0400 - 5.5300 1.00 2711 143 0.2678 0.2761 REMARK 3 2 5.5300 - 4.3900 1.00 2586 137 0.2306 0.2540 REMARK 3 3 4.3900 - 3.8400 1.00 2588 136 0.2135 0.2448 REMARK 3 4 3.8400 - 3.4900 1.00 2555 134 0.2543 0.2564 REMARK 3 5 3.4900 - 3.2400 1.00 2542 134 0.2917 0.3507 REMARK 3 6 3.2400 - 3.0400 1.00 2521 133 0.2873 0.3557 REMARK 3 7 3.0400 - 2.8900 1.00 2542 134 0.3083 0.3766 REMARK 3 8 2.8900 - 2.7700 1.00 2518 132 0.3554 0.4392 REMARK 3 9 2.7700 - 2.6600 1.00 2520 133 0.3040 0.3444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.359 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4276 REMARK 3 ANGLE : 0.916 5798 REMARK 3 CHIRALITY : 0.054 688 REMARK 3 PLANARITY : 0.008 736 REMARK 3 DIHEDRAL : 13.094 1564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:170) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1090 15.4076 15.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.6255 T22: 0.5275 REMARK 3 T33: 0.6946 T12: 0.0443 REMARK 3 T13: -0.0977 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 1.0161 L22: 3.7837 REMARK 3 L33: 7.5127 L12: -0.1722 REMARK 3 L13: 0.5178 L23: -4.4930 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: 0.1054 S13: -0.2170 REMARK 3 S21: 0.2564 S22: -0.2122 S23: -0.3850 REMARK 3 S31: 0.1790 S32: 0.5611 S33: 0.0618 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 0:162) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9886 -8.2496 26.1972 REMARK 3 T TENSOR REMARK 3 T11: 1.2660 T22: 0.7030 REMARK 3 T33: 0.6114 T12: -0.0654 REMARK 3 T13: -0.1049 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 2.8055 L22: 7.8785 REMARK 3 L33: 4.4077 L12: -0.5777 REMARK 3 L13: -0.4927 L23: -2.4285 REMARK 3 S TENSOR REMARK 3 S11: -0.2528 S12: 0.5088 S13: -0.1689 REMARK 3 S21: -2.2065 S22: -0.1325 S23: 0.0572 REMARK 3 S31: 0.7996 S32: -0.3979 S33: 0.3807 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 0:169) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9593 9.7753 1.8218 REMARK 3 T TENSOR REMARK 3 T11: 0.5221 T22: 0.6674 REMARK 3 T33: 0.4862 T12: -0.0084 REMARK 3 T13: 0.1517 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.4135 L22: 8.5779 REMARK 3 L33: 4.6521 L12: 0.2735 REMARK 3 L13: -0.5487 L23: 3.5200 REMARK 3 S TENSOR REMARK 3 S11: -0.4084 S12: -0.3466 S13: -0.1814 REMARK 3 S21: 0.9204 S22: -0.1718 S23: 0.8214 REMARK 3 S31: 0.6245 S32: -0.5076 S33: 0.5308 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 0:139) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5976 -17.0925 6.0855 REMARK 3 T TENSOR REMARK 3 T11: 1.8229 T22: 0.9010 REMARK 3 T33: 1.2278 T12: 0.0306 REMARK 3 T13: 0.6916 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 0.5540 L22: 0.9015 REMARK 3 L33: 2.2466 L12: 0.5883 REMARK 3 L13: -0.9415 L23: -1.1803 REMARK 3 S TENSOR REMARK 3 S11: -0.4664 S12: -0.3014 S13: -0.8258 REMARK 3 S21: 0.5600 S22: -0.2240 S23: 0.3932 REMARK 3 S31: 1.2555 S32: 0.1104 S33: 0.8492 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 8 through 62 or REMARK 3 resid 68 through 89 or resid 104 through REMARK 3 131 or resid 155 through 169)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 8 through 62 or REMARK 3 resid 68 through 89 or resid 104 through REMARK 3 169)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 8 through 62 or REMARK 3 resid 68 through 89 or resid 104 through REMARK 3 131 or resid 155 through 169)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24304 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 43.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.03835 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.89830 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: P 21 21 21 65.7 109.7 114.0 90 90 90 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M NACL, 0.1 M MES, 10 MM NASCN AS REMARK 280 ADDITIVE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.84550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.97600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.97600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.84550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 ASN A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 LEU A 94 REMARK 465 SER A 95 REMARK 465 ALA A 96 REMARK 465 LEU A 97 REMARK 465 ARG A 98 REMARK 465 ASN A 99 REMARK 465 TYR A 100 REMARK 465 GLU A 101 REMARK 465 ALA A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 134 REMARK 465 ARG A 135 REMARK 465 HIS A 136 REMARK 465 SER A 137 REMARK 465 ASP A 138 REMARK 465 HIS A 139 REMARK 465 VAL A 140 REMARK 465 ASN A 141 REMARK 465 ALA A 142 REMARK 465 HIS A 143 REMARK 465 GLN A 178 REMARK 465 THR A 179 REMARK 465 GLY B 6 REMARK 465 SER B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 GLY B 67 REMARK 465 PRO B 90 REMARK 465 SER B 91 REMARK 465 ARG B 92 REMARK 465 GLN B 93 REMARK 465 LEU B 94 REMARK 465 SER B 95 REMARK 465 ALA B 96 REMARK 465 LEU B 97 REMARK 465 ARG B 98 REMARK 465 ASN B 99 REMARK 465 ASP B 132 REMARK 465 TYR B 133 REMARK 465 ALA B 134 REMARK 465 ARG B 135 REMARK 465 HIS B 136 REMARK 465 SER B 137 REMARK 465 ASP B 138 REMARK 465 HIS B 139 REMARK 465 VAL B 140 REMARK 465 ASN B 141 REMARK 465 ALA B 142 REMARK 465 HIS B 143 REMARK 465 ILE B 144 REMARK 465 VAL B 145 REMARK 465 ASN B 146 REMARK 465 LEU B 147 REMARK 465 LYS B 148 REMARK 465 GLY B 149 REMARK 465 ALA B 150 REMARK 465 ILE B 151 REMARK 465 LEU B 152 REMARK 465 THR B 153 REMARK 465 ASP B 154 REMARK 465 GLN B 178 REMARK 465 THR B 179 REMARK 465 GLY C 6 REMARK 465 SER C 64 REMARK 465 SER C 65 REMARK 465 ALA C 66 REMARK 465 SER C 137 REMARK 465 ASP C 138 REMARK 465 HIS C 139 REMARK 465 VAL C 140 REMARK 465 ASN C 141 REMARK 465 ALA C 142 REMARK 465 HIS C 143 REMARK 465 ILE C 144 REMARK 465 ALA C 170 REMARK 465 SER C 171 REMARK 465 VAL C 172 REMARK 465 ASN C 173 REMARK 465 GLU C 174 REMARK 465 ALA C 175 REMARK 465 ALA C 176 REMARK 465 MET C 177 REMARK 465 GLN C 178 REMARK 465 THR C 179 REMARK 465 GLY D 6 REMARK 465 SER D 64 REMARK 465 SER D 65 REMARK 465 ALA D 66 REMARK 465 THR D 86 REMARK 465 PRO D 87 REMARK 465 ASP D 88 REMARK 465 ASN D 89 REMARK 465 PRO D 90 REMARK 465 SER D 91 REMARK 465 ARG D 92 REMARK 465 GLN D 93 REMARK 465 LEU D 94 REMARK 465 SER D 95 REMARK 465 ALA D 96 REMARK 465 LEU D 97 REMARK 465 ARG D 98 REMARK 465 ASN D 99 REMARK 465 TYR D 100 REMARK 465 GLU D 101 REMARK 465 ALA D 102 REMARK 465 ALA D 103 REMARK 465 ASP D 104 REMARK 465 PHE D 105 REMARK 465 ASP D 106 REMARK 465 ILE D 130 REMARK 465 ARG D 131 REMARK 465 ASP D 132 REMARK 465 TYR D 133 REMARK 465 ALA D 134 REMARK 465 ARG D 135 REMARK 465 HIS D 136 REMARK 465 SER D 137 REMARK 465 ASP D 138 REMARK 465 HIS D 139 REMARK 465 VAL D 140 REMARK 465 ASN D 141 REMARK 465 ALA D 142 REMARK 465 LEU D 147 REMARK 465 LYS D 148 REMARK 465 GLY D 149 REMARK 465 ALA D 150 REMARK 465 ILE D 151 REMARK 465 LEU D 152 REMARK 465 THR D 153 REMARK 465 ASP D 154 REMARK 465 PRO D 155 REMARK 465 ARG D 156 REMARK 465 VAL D 157 REMARK 465 SER D 158 REMARK 465 SER D 159 REMARK 465 ILE D 160 REMARK 465 LYS D 161 REMARK 465 GLU D 162 REMARK 465 ASP D 163 REMARK 465 LEU D 164 REMARK 465 ILE D 165 REMARK 465 VAL D 166 REMARK 465 ARG D 167 REMARK 465 SER D 168 REMARK 465 SER D 169 REMARK 465 ALA D 170 REMARK 465 SER D 171 REMARK 465 VAL D 172 REMARK 465 ASN D 173 REMARK 465 GLU D 174 REMARK 465 ALA D 175 REMARK 465 ALA D 176 REMARK 465 MET D 177 REMARK 465 GLN D 178 REMARK 465 THR D 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 63 CG OD1 ND2 REMARK 470 ASN C 146 CG OD1 ND2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG C 98 REMARK 475 ARG D 83 REMARK 475 ASP D 121 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 8 N REMARK 480 ARG A 38 CG CD NH2 REMARK 480 THR A 39 O REMARK 480 ARG A 84 NH2 REMARK 480 THR A 86 OG1 CG2 REMARK 480 PRO A 87 CB CG CD REMARK 480 SER A 91 O REMARK 480 ARG A 92 CB CG CD REMARK 480 GLU A 115 CB CG CD OE1 OE2 REMARK 480 ASP B 88 C O CB CG OD1 OD2 REMARK 480 TYR B 100 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU B 101 N CB CG REMARK 480 ILE B 130 N REMARK 480 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 40 CB CG CD CE NZ REMARK 480 ASP C 88 CB CG OD1 OD2 REMARK 480 SER C 95 OG REMARK 480 LEU C 97 CG CD1 CD2 REMARK 480 HIS C 136 CB CG ND1 CD2 CE1 NE2 REMARK 480 VAL C 145 CB CG1 CG2 REMARK 480 GLY D 57 CA O REMARK 480 SER D 62 CB OG REMARK 480 ASN D 63 N CA C CB CG OD1 ND2 REMARK 480 ALA D 68 N CA CB REMARK 480 LYS D 77 CA C O CB CG CD CE REMARK 480 LYS D 77 NZ REMARK 480 LYS D 81 C O CG CD CE NZ REMARK 480 ALA D 82 N CA CB REMARK 480 ARG D 84 N CB CG CD NE CZ NH1 REMARK 480 ARG D 84 NH2 REMARK 480 LEU D 108 N CA C O CB CD1 REMARK 480 ILE D 109 CG1 CG2 CD1 REMARK 480 VAL D 111 O CB CG1 CG2 REMARK 480 ILE D 112 N CA CB CG1 CG2 CD1 REMARK 480 ASP D 114 C O REMARK 480 ASN D 118 C REMARK 480 LEU D 120 O CG CD1 CD2 REMARK 480 ALA D 122 N CA CB REMARK 480 TYR D 123 CA C O CB CG CD1 CD2 REMARK 480 TYR D 123 CE1 CE2 CZ OH REMARK 480 LYS D 124 N CA CB CG CD CE REMARK 480 PRO D 126 N CA CB CG CD REMARK 480 GLU D 128 CB CG CD OE1 OE2 REMARK 480 HIS D 143 N O ND1 CE1 NE2 REMARK 480 ASN D 146 CB ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 92 71.84 -106.65 REMARK 500 TYR B 9 22.19 -142.59 REMARK 500 TYR C 9 23.53 -142.11 REMARK 500 ARG C 135 44.99 -104.59 REMARK 500 ASN C 146 -168.21 72.53 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8Q5M A 8 179 UNP A0A0L6ZWS4_ECOLX DBREF2 8Q5M A A0A0L6ZWS4 8 179 DBREF1 8Q5M B 8 179 UNP A0A0L6ZWS4_ECOLX DBREF2 8Q5M B A0A0L6ZWS4 8 179 DBREF1 8Q5M C 8 179 UNP A0A0L6ZWS4_ECOLX DBREF2 8Q5M C A0A0L6ZWS4 8 179 DBREF1 8Q5M D 8 179 UNP A0A0L6ZWS4_ECOLX DBREF2 8Q5M D A0A0L6ZWS4 8 179 SEQADV 8Q5M GLY A 6 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M SER A 7 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M GLY B 6 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M SER B 7 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M GLY C 6 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M SER C 7 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M GLY D 6 UNP A0A0L6ZWS EXPRESSION TAG SEQADV 8Q5M SER D 7 UNP A0A0L6ZWS EXPRESSION TAG SEQRES 1 A 174 GLY SER SER TYR ASP TRP LEU ASN ALA LEU ASN ASN LEU SEQRES 2 A 174 GLU LEU LEU SER LEU HIS SER GLU ILE LEU THR GLN LEU SEQRES 3 A 174 ARG SER ARG GLY VAL ILE ARG THR LYS ASN ASN PRO VAL SEQRES 4 A 174 GLY ASP TYR ALA GLU TRP LEU VAL SER ASN ALA LEU GLY SEQRES 5 A 174 MET THR LEU LEU SER ASN SER SER ALA GLY ALA ASP ALA SEQRES 6 A 174 ILE ASP ALA ASP GLY LEU LYS VAL GLN ILE LYS ALA ARG SEQRES 7 A 174 ARG VAL THR PRO ASP ASN PRO SER ARG GLN LEU SER ALA SEQRES 8 A 174 LEU ARG ASN TYR GLU ALA ALA ASP PHE ASP TYR LEU ILE SEQRES 9 A 174 ALA VAL ILE PHE ASP GLU THR TYR ASN ILE LEU ASP ALA SEQRES 10 A 174 TYR LYS ILE PRO HIS GLU VAL ILE ARG ASP TYR ALA ARG SEQRES 11 A 174 HIS SER ASP HIS VAL ASN ALA HIS ILE VAL ASN LEU LYS SEQRES 12 A 174 GLY ALA ILE LEU THR ASP PRO ARG VAL SER SER ILE LYS SEQRES 13 A 174 GLU ASP LEU ILE VAL ARG SER SER ALA SER VAL ASN GLU SEQRES 14 A 174 ALA ALA MET GLN THR SEQRES 1 B 174 GLY SER SER TYR ASP TRP LEU ASN ALA LEU ASN ASN LEU SEQRES 2 B 174 GLU LEU LEU SER LEU HIS SER GLU ILE LEU THR GLN LEU SEQRES 3 B 174 ARG SER ARG GLY VAL ILE ARG THR LYS ASN ASN PRO VAL SEQRES 4 B 174 GLY ASP TYR ALA GLU TRP LEU VAL SER ASN ALA LEU GLY SEQRES 5 B 174 MET THR LEU LEU SER ASN SER SER ALA GLY ALA ASP ALA SEQRES 6 B 174 ILE ASP ALA ASP GLY LEU LYS VAL GLN ILE LYS ALA ARG SEQRES 7 B 174 ARG VAL THR PRO ASP ASN PRO SER ARG GLN LEU SER ALA SEQRES 8 B 174 LEU ARG ASN TYR GLU ALA ALA ASP PHE ASP TYR LEU ILE SEQRES 9 B 174 ALA VAL ILE PHE ASP GLU THR TYR ASN ILE LEU ASP ALA SEQRES 10 B 174 TYR LYS ILE PRO HIS GLU VAL ILE ARG ASP TYR ALA ARG SEQRES 11 B 174 HIS SER ASP HIS VAL ASN ALA HIS ILE VAL ASN LEU LYS SEQRES 12 B 174 GLY ALA ILE LEU THR ASP PRO ARG VAL SER SER ILE LYS SEQRES 13 B 174 GLU ASP LEU ILE VAL ARG SER SER ALA SER VAL ASN GLU SEQRES 14 B 174 ALA ALA MET GLN THR SEQRES 1 C 174 GLY SER SER TYR ASP TRP LEU ASN ALA LEU ASN ASN LEU SEQRES 2 C 174 GLU LEU LEU SER LEU HIS SER GLU ILE LEU THR GLN LEU SEQRES 3 C 174 ARG SER ARG GLY VAL ILE ARG THR LYS ASN ASN PRO VAL SEQRES 4 C 174 GLY ASP TYR ALA GLU TRP LEU VAL SER ASN ALA LEU GLY SEQRES 5 C 174 MET THR LEU LEU SER ASN SER SER ALA GLY ALA ASP ALA SEQRES 6 C 174 ILE ASP ALA ASP GLY LEU LYS VAL GLN ILE LYS ALA ARG SEQRES 7 C 174 ARG VAL THR PRO ASP ASN PRO SER ARG GLN LEU SER ALA SEQRES 8 C 174 LEU ARG ASN TYR GLU ALA ALA ASP PHE ASP TYR LEU ILE SEQRES 9 C 174 ALA VAL ILE PHE ASP GLU THR TYR ASN ILE LEU ASP ALA SEQRES 10 C 174 TYR LYS ILE PRO HIS GLU VAL ILE ARG ASP TYR ALA ARG SEQRES 11 C 174 HIS SER ASP HIS VAL ASN ALA HIS ILE VAL ASN LEU LYS SEQRES 12 C 174 GLY ALA ILE LEU THR ASP PRO ARG VAL SER SER ILE LYS SEQRES 13 C 174 GLU ASP LEU ILE VAL ARG SER SER ALA SER VAL ASN GLU SEQRES 14 C 174 ALA ALA MET GLN THR SEQRES 1 D 174 GLY SER SER TYR ASP TRP LEU ASN ALA LEU ASN ASN LEU SEQRES 2 D 174 GLU LEU LEU SER LEU HIS SER GLU ILE LEU THR GLN LEU SEQRES 3 D 174 ARG SER ARG GLY VAL ILE ARG THR LYS ASN ASN PRO VAL SEQRES 4 D 174 GLY ASP TYR ALA GLU TRP LEU VAL SER ASN ALA LEU GLY SEQRES 5 D 174 MET THR LEU LEU SER ASN SER SER ALA GLY ALA ASP ALA SEQRES 6 D 174 ILE ASP ALA ASP GLY LEU LYS VAL GLN ILE LYS ALA ARG SEQRES 7 D 174 ARG VAL THR PRO ASP ASN PRO SER ARG GLN LEU SER ALA SEQRES 8 D 174 LEU ARG ASN TYR GLU ALA ALA ASP PHE ASP TYR LEU ILE SEQRES 9 D 174 ALA VAL ILE PHE ASP GLU THR TYR ASN ILE LEU ASP ALA SEQRES 10 D 174 TYR LYS ILE PRO HIS GLU VAL ILE ARG ASP TYR ALA ARG SEQRES 11 D 174 HIS SER ASP HIS VAL ASN ALA HIS ILE VAL ASN LEU LYS SEQRES 12 D 174 GLY ALA ILE LEU THR ASP PRO ARG VAL SER SER ILE LYS SEQRES 13 D 174 GLU ASP LEU ILE VAL ARG SER SER ALA SER VAL ASN GLU SEQRES 14 D 174 ALA ALA MET GLN THR FORMUL 5 HOH *48(H2 O) HELIX 1 AA1 TYR A 9 LEU A 15 5 7 HELIX 2 AA2 ASN A 16 ARG A 34 1 19 HELIX 3 AA3 ASN A 42 GLY A 57 1 16 HELIX 4 AA4 HIS A 127 TYR A 133 1 7 HELIX 5 AA5 LYS A 148 LEU A 152 5 5 HELIX 6 AA6 ILE A 160 SER A 168 1 9 HELIX 7 AA7 SER A 169 ALA A 176 1 8 HELIX 8 AA8 TYR B 9 LEU B 15 5 7 HELIX 9 AA9 ASN B 16 ARG B 34 1 19 HELIX 10 AB1 ASN B 42 GLY B 57 1 16 HELIX 11 AB2 ILE B 160 MET B 177 1 18 HELIX 12 AB3 TYR C 9 LEU C 15 5 7 HELIX 13 AB4 ASN C 16 ARG C 34 1 19 HELIX 14 AB5 ASN C 42 GLY C 57 1 16 HELIX 15 AB6 ARG C 98 ALA C 103 5 6 HELIX 16 AB7 HIS C 127 ARG C 135 1 9 HELIX 17 AB8 ALA C 150 ASP C 154 5 5 HELIX 18 AB9 ILE C 160 SER C 168 1 9 HELIX 19 AC1 TYR D 9 LEU D 15 5 7 HELIX 20 AC2 ASN D 16 ARG D 34 1 19 HELIX 21 AC3 ASN D 42 GLY D 57 1 16 SHEET 1 AA1 6 THR A 59 LEU A 60 0 SHEET 2 AA1 6 ALA A 70 ILE A 71 -1 O ILE A 71 N THR A 59 SHEET 3 AA1 6 LYS A 77 ARG A 84 -1 O VAL A 78 N ALA A 70 SHEET 4 AA1 6 TYR A 107 PHE A 113 1 O ILE A 109 N GLN A 79 SHEET 5 AA1 6 ILE A 119 PRO A 126 -1 O ILE A 125 N LEU A 108 SHEET 6 AA1 6 SER A 158 SER A 159 -1 O SER A 158 N LYS A 124 SHEET 1 AA2 6 THR B 59 LEU B 60 0 SHEET 2 AA2 6 ALA B 70 ILE B 71 -1 O ILE B 71 N THR B 59 SHEET 3 AA2 6 LYS B 77 ARG B 84 -1 O VAL B 78 N ALA B 70 SHEET 4 AA2 6 TYR B 107 PHE B 113 1 O ILE B 109 N GLN B 79 SHEET 5 AA2 6 ILE B 119 PRO B 126 -1 O ILE B 125 N LEU B 108 SHEET 6 AA2 6 SER B 158 SER B 159 -1 O SER B 158 N LYS B 124 SHEET 1 AA3 6 THR C 59 LEU C 60 0 SHEET 2 AA3 6 ALA C 70 ILE C 71 -1 O ILE C 71 N THR C 59 SHEET 3 AA3 6 LYS C 77 ARG C 84 -1 O VAL C 78 N ALA C 70 SHEET 4 AA3 6 TYR C 107 PHE C 113 1 O ILE C 109 N GLN C 79 SHEET 5 AA3 6 ILE C 119 PRO C 126 -1 O ILE C 125 N LEU C 108 SHEET 6 AA3 6 SER C 158 SER C 159 -1 O SER C 158 N LYS C 124 SHEET 1 AA4 5 THR D 59 LEU D 60 0 SHEET 2 AA4 5 ALA D 70 ILE D 71 -1 O ILE D 71 N THR D 59 SHEET 3 AA4 5 LYS D 77 ARG D 84 -1 O VAL D 78 N ALA D 70 SHEET 4 AA4 5 LEU D 108 PHE D 113 1 O PHE D 113 N ARG D 83 SHEET 5 AA4 5 ILE D 119 ILE D 125 -1 O ILE D 125 N LEU D 108 CRYST1 65.691 109.710 113.952 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008776 0.00000 MTRIX1 1 -0.994947 -0.052192 0.085765 61.02750 1 MTRIX2 1 0.098385 -0.677058 0.729324 -13.49230 1 MTRIX3 1 0.020003 0.734077 0.678772 4.42699 1 MTRIX1 2 -0.994796 0.031773 -0.096804 95.12669 1 MTRIX2 2 0.093595 0.660403 -0.745056 6.95274 1 MTRIX3 2 0.040257 -0.750239 -0.659940 20.78199 1