HEADER OXIDOREDUCTASE 09-AUG-23 8Q5S TITLE ANAEROBIC CRYSTAL STRUCTURE OF APO-HIF PROLYL HYDROXYLASE 2 (PHD2 181- TITLE 2 407)IN COMPLEX WITH ACETATE (ACT) AND HIF2ALPHA-CODD PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 12 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 13 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 14 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS 2OG OXYGENASES, OXYGEN SENSOR, JELLY-ROLL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FIORINI,W.D.FIGG JR,C.J.SCHOFIELD REVDAT 1 21-AUG-24 8Q5S 0 JRNL AUTH G.FIORINI,W.D.FIGG JR,C.J.SCHOFIELD JRNL TITL HIF PROLYL HYDROXYLASE 2 IN COMPLEX WITH HIF2ALPHA-CODD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 34655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8200 - 3.5000 1.00 2802 163 0.1654 0.1783 REMARK 3 2 3.5000 - 2.7800 1.00 2691 136 0.1631 0.1927 REMARK 3 3 2.7800 - 2.4300 1.00 2603 166 0.1700 0.1922 REMARK 3 4 2.4300 - 2.2100 1.00 2607 140 0.1650 0.2027 REMARK 3 5 2.2100 - 2.0500 1.00 2602 134 0.1854 0.2245 REMARK 3 6 2.0500 - 1.9300 1.00 2605 131 0.1841 0.2510 REMARK 3 7 1.9300 - 1.8300 1.00 2597 133 0.2178 0.2485 REMARK 3 8 1.8300 - 1.7500 1.00 2596 132 0.2519 0.2702 REMARK 3 9 1.7500 - 1.6800 1.00 2553 134 0.2719 0.2922 REMARK 3 10 1.6800 - 1.6300 1.00 2561 147 0.2929 0.3433 REMARK 3 11 1.6300 - 1.5800 1.00 2522 137 0.3142 0.3352 REMARK 3 12 1.5800 - 1.5300 0.91 2336 127 0.3416 0.3237 REMARK 3 13 1.5300 - 1.4900 0.70 1812 88 0.3996 0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1961 REMARK 3 ANGLE : 1.007 2668 REMARK 3 CHIRALITY : 0.082 286 REMARK 3 PLANARITY : 0.010 354 REMARK 3 DIHEDRAL : 6.115 282 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7128 9.4580 14.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2063 REMARK 3 T33: 0.1797 T12: -0.0480 REMARK 3 T13: -0.0263 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 3.8052 L22: 4.0214 REMARK 3 L33: 2.1119 L12: -1.8018 REMARK 3 L13: 0.9185 L23: -0.5437 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0061 S13: -0.2417 REMARK 3 S21: -0.2333 S22: 0.0890 S23: 0.3388 REMARK 3 S31: 0.1975 S32: -0.2901 S33: -0.1295 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4569 -5.4401 18.4569 REMARK 3 T TENSOR REMARK 3 T11: 0.3608 T22: 0.2122 REMARK 3 T33: 0.3693 T12: 0.0361 REMARK 3 T13: -0.0506 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 3.2055 L22: 6.0174 REMARK 3 L33: 1.0908 L12: 4.3621 REMARK 3 L13: 0.5357 L23: 1.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.2320 S12: -0.3291 S13: -0.6666 REMARK 3 S21: -0.1163 S22: -0.1306 S23: 0.0137 REMARK 3 S31: 0.2017 S32: -0.0222 S33: -0.2080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4018 9.5340 13.8973 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.1529 REMARK 3 T33: 0.1705 T12: 0.0013 REMARK 3 T13: -0.0221 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.2699 L22: 1.0000 REMARK 3 L33: 1.7155 L12: -0.1804 REMARK 3 L13: 0.6303 L23: -0.2766 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: -0.0074 S13: -0.1246 REMARK 3 S21: -0.0628 S22: -0.0277 S23: -0.0752 REMARK 3 S31: 0.1430 S32: 0.1172 S33: -0.0315 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6441 11.2181 24.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1851 REMARK 3 T33: 0.1446 T12: -0.0111 REMARK 3 T13: -0.0157 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 1.7266 L22: 2.2736 REMARK 3 L33: 3.3354 L12: -0.1516 REMARK 3 L13: 0.0846 L23: -1.7118 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.2582 S13: -0.1164 REMARK 3 S21: 0.1195 S22: -0.0067 S23: 0.0716 REMARK 3 S31: 0.0649 S32: 0.0080 S33: -0.0133 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0514 19.6978 28.6403 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.3282 REMARK 3 T33: 0.2214 T12: -0.0260 REMARK 3 T13: 0.0317 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 8.0592 L22: 4.3399 REMARK 3 L33: 4.7398 L12: -5.8554 REMARK 3 L13: -2.2247 L23: 2.1799 REMARK 3 S TENSOR REMARK 3 S11: 0.0730 S12: -0.3132 S13: 0.3680 REMARK 3 S21: -0.0717 S22: 0.1307 S23: 0.0515 REMARK 3 S31: -0.1780 S32: -0.5128 S33: -0.1465 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0076 12.4253 24.3862 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1952 REMARK 3 T33: 0.1367 T12: -0.0335 REMARK 3 T13: -0.0087 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.1743 L22: 2.5424 REMARK 3 L33: 2.0578 L12: -0.3923 REMARK 3 L13: 0.3650 L23: -0.5896 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.3299 S13: -0.0729 REMARK 3 S21: 0.1702 S22: -0.1011 S23: 0.0718 REMARK 3 S31: 0.1123 S32: -0.0504 S33: 0.0523 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4841 18.1123 10.4013 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1398 REMARK 3 T33: 0.1246 T12: 0.0053 REMARK 3 T13: 0.0072 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.3862 L22: 5.8684 REMARK 3 L33: 4.8161 L12: 1.3409 REMARK 3 L13: -1.3376 L23: -4.6899 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: -0.0146 S13: 0.0260 REMARK 3 S21: 0.0578 S22: 0.0566 S23: 0.0357 REMARK 3 S31: -0.1652 S32: 0.0230 S33: -0.0912 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 523 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6404 28.2635 23.7252 REMARK 3 T TENSOR REMARK 3 T11: 0.4435 T22: 0.2320 REMARK 3 T33: 0.3366 T12: -0.0228 REMARK 3 T13: -0.0298 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 4.5000 L22: 4.5417 REMARK 3 L33: 3.7766 L12: -4.3890 REMARK 3 L13: -0.4178 L23: 0.7722 REMARK 3 S TENSOR REMARK 3 S11: -0.1774 S12: -0.2372 S13: 0.9774 REMARK 3 S21: 1.1578 S22: 0.1956 S23: -0.9030 REMARK 3 S31: -1.2456 S32: 0.0012 S33: -0.1134 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2067 15.5176 7.4731 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.2805 REMARK 3 T33: 0.2482 T12: -0.0114 REMARK 3 T13: 0.0219 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 3.1582 L22: 6.2242 REMARK 3 L33: 4.6042 L12: 3.5922 REMARK 3 L13: 3.1837 L23: 5.2845 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.5931 S13: -0.3940 REMARK 3 S21: -0.5364 S22: 0.6620 S23: -0.5073 REMARK 3 S31: -0.4535 S32: 0.4935 S33: -0.5328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (10-35%) PEG 4K, 0.2 M AMMONIUM REMARK 280 ACETATE, 0.1 M SODIUM AMMONIUM ACETATE TRIHYDRATE PH (4.1-5.6), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 18.94400 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.40350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 18.94400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.40350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 PRO A 189 CG CD REMARK 470 LYS A 192 CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CD OE1 OE2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 LYS A 244 CE NZ REMARK 470 LYS A 249 NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS A 262 NZ REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 LYS A 332 CD CE NZ REMARK 470 LYS A 337 CE NZ REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 GLU B 523 OE1 OE2 REMARK 470 ASP B 536 CG OD1 OD2 REMARK 470 GLU B 538 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 286 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 538 O HOH B 601 1.99 REMARK 500 O HOH A 617 O HOH A 731 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 283 CB CYS A 283 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -59.46 -122.89 REMARK 500 LYS A 244 -151.47 -136.29 REMARK 500 PHE A 346 75.03 -111.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 8Q5S A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 8Q5S B 523 542 UNP Q99814 EPAS1_HUMAN 523 542 SEQADV 8Q5S GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q5S SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q5S HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q5S MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q5S ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 8Q5S SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU SEQRES 1 B 20 GLU LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET SEQRES 2 B 20 ASP GLY GLU ASP PHE GLN LEU HET ACT A 501 7 HET ACT A 502 7 HET ACT A 503 7 HETNAM ACT ACETATE ION FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 HOH *191(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 SER A 247 ILE A 251 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 THR A 405 1 13 HELIX 8 AA8 ASP B 525 ALA B 530 5 6 SHEET 1 AA1 7 ILE A 207 VAL A 210 0 SHEET 2 AA1 7 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 7 THR A 382 ASP A 392 -1 O TYR A 390 N VAL A 324 SHEET 5 AA1 7 ALA A 298 PRO A 304 -1 N MET A 299 O THR A 387 SHEET 6 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 7 AA1 7 THR A 236 ASP A 237 -1 N THR A 236 O ILE A 256 SHEET 1 AA2 6 ILE A 207 VAL A 210 0 SHEET 2 AA2 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 6 THR A 382 ASP A 392 -1 O TYR A 390 N VAL A 324 SHEET 5 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 6 AA2 6 PHE B 540 GLN B 541 -1 O PHE B 540 N ARG A 295 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 CRYST1 37.888 42.824 130.807 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007645 0.00000