HEADER PROTEIN BINDING 16-AUG-23 8Q7K TITLE IRGQ LIR2 PEPTIDE IN COMPLEX WITH LC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 5 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B COMPND 6 LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 7 LIGHT CHAIN 3 BETA; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: IMMUNITY-RELATED GTPASE FAMILY Q PROTEIN; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP1LC3B, MAP1ALC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS AUTOPHAGY, LC3B, LIR, IRGQ, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.MISRA,H.J.BAILEY,J.POMIRSKA,I.DIKIC REVDAT 1 28-AUG-24 8Q7K 0 JRNL AUTH L.HERHAUS,U.GESTAL-MATO,V.V.EAPEN,I.MACINKOVIC,H.J.BAILEY, JRNL AUTH 2 C.PRIETO-GARCIA,M.MISRA,A.JACOMIN,A.COVARRUBIAS-PINTO, JRNL AUTH 3 I.BAGARIC,J.VOLLRATH,R.M.BHASKARA,K.HUSNJAK,J.ZOELLNER, JRNL AUTH 4 A.GIKANDI,G.J.HEDEN VAN NOORT,J.LANGER,A.WEIGERT,J.W.HARPER, JRNL AUTH 5 J.D.MANCIAS,I.DIKIC JRNL TITL TUMOR IMMUNE EVASION THROUGH IRGQ-DIRECTED AUTOPHAGY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1900 - 3.7600 1.00 2975 160 0.1760 0.1835 REMARK 3 2 3.7600 - 2.9800 1.00 2830 146 0.1788 0.1903 REMARK 3 3 2.9800 - 2.6100 1.00 2799 133 0.2003 0.2487 REMARK 3 4 2.6100 - 2.3700 1.00 2758 154 0.1972 0.2362 REMARK 3 5 2.3700 - 2.2000 1.00 2744 135 0.1952 0.2354 REMARK 3 6 2.2000 - 2.0700 1.00 2745 141 0.1875 0.2095 REMARK 3 7 2.0700 - 1.9700 1.00 2738 140 0.1956 0.2060 REMARK 3 8 1.9700 - 1.8800 1.00 2715 163 0.2134 0.2575 REMARK 3 9 1.8800 - 1.8100 1.00 2709 143 0.2203 0.2645 REMARK 3 10 1.8100 - 1.7500 1.00 2718 141 0.2284 0.2515 REMARK 3 11 1.7500 - 1.6900 1.00 2716 132 0.2332 0.2216 REMARK 3 12 1.6900 - 1.6400 1.00 2678 153 0.2625 0.2754 REMARK 3 13 1.6400 - 1.6000 1.00 2703 142 0.3002 0.3352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.187 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2156 REMARK 3 ANGLE : 1.167 2906 REMARK 3 CHIRALITY : 0.085 324 REMARK 3 PLANARITY : 0.013 375 REMARK 3 DIHEDRAL : 16.970 844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6714 -17.2616 -2.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1798 REMARK 3 T33: 0.1919 T12: -0.0364 REMARK 3 T13: 0.0464 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.1123 L22: 4.4595 REMARK 3 L33: 3.2011 L12: 0.1983 REMARK 3 L13: 0.1801 L23: 1.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.2760 S12: 0.1792 S13: -0.4008 REMARK 3 S21: -0.0714 S22: 0.3092 S23: -0.3074 REMARK 3 S31: 0.2075 S32: 0.0009 S33: -0.0763 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1529 -8.9956 10.8892 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.1854 REMARK 3 T33: 0.2568 T12: -0.0495 REMARK 3 T13: -0.0028 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.5443 L22: 2.5431 REMARK 3 L33: 5.5170 L12: -0.4300 REMARK 3 L13: -0.7374 L23: 1.1042 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.1910 S13: 0.1195 REMARK 3 S21: 0.1872 S22: 0.0294 S23: 0.0657 REMARK 3 S31: -0.0853 S32: 0.0668 S33: 0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9847 10.3979 10.8271 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.3580 REMARK 3 T33: 0.2882 T12: -0.0083 REMARK 3 T13: 0.0115 T23: 0.0907 REMARK 3 L TENSOR REMARK 3 L11: 8.0671 L22: 7.3973 REMARK 3 L33: 2.1708 L12: 1.0003 REMARK 3 L13: -0.6497 L23: -3.4246 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.8788 S13: 0.4942 REMARK 3 S21: -0.6573 S22: -0.4531 S23: -0.2303 REMARK 3 S31: 0.4515 S32: 0.7167 S33: 0.3616 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9704 14.7494 23.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.3689 T22: 0.3481 REMARK 3 T33: 0.2571 T12: -0.0933 REMARK 3 T13: -0.0250 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.8090 L22: 6.8025 REMARK 3 L33: 3.0927 L12: -5.0276 REMARK 3 L13: -1.0199 L23: 0.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.2059 S12: -0.7852 S13: 0.4572 REMARK 3 S21: 0.5665 S22: 0.2296 S23: -0.4569 REMARK 3 S31: -0.2141 S32: 0.1563 S33: -0.0706 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1432 16.5488 13.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.2661 REMARK 3 T33: 0.2386 T12: -0.0038 REMARK 3 T13: 0.0489 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 5.8052 L22: 3.6380 REMARK 3 L33: 2.9346 L12: -1.1043 REMARK 3 L13: -3.5811 L23: 2.2584 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.1233 S13: 0.2332 REMARK 3 S21: 0.4553 S22: 0.1586 S23: 0.1272 REMARK 3 S31: -0.0373 S32: -0.3187 S33: -0.3426 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0217 14.0301 -0.8572 REMARK 3 T TENSOR REMARK 3 T11: 0.3550 T22: 0.2532 REMARK 3 T33: 0.3040 T12: 0.0144 REMARK 3 T13: 0.0131 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 5.2299 L22: 2.5263 REMARK 3 L33: 2.3712 L12: 1.3205 REMARK 3 L13: 1.0503 L23: 2.3762 REMARK 3 S TENSOR REMARK 3 S11: 0.1856 S12: 0.4996 S13: -0.4582 REMARK 3 S21: 0.2362 S22: 0.2079 S23: -0.3063 REMARK 3 S31: 0.5254 S32: 0.7331 S33: -0.3530 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6206 19.6260 12.4707 REMARK 3 T TENSOR REMARK 3 T11: 0.3218 T22: 0.3269 REMARK 3 T33: 0.3000 T12: 0.0490 REMARK 3 T13: 0.0801 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 7.4082 L22: 5.1489 REMARK 3 L33: 5.6985 L12: 0.9345 REMARK 3 L13: 1.0635 L23: 0.7603 REMARK 3 S TENSOR REMARK 3 S11: 0.1508 S12: -0.5578 S13: 0.6798 REMARK 3 S21: 0.2290 S22: -0.1752 S23: 0.4035 REMARK 3 S31: -0.5756 S32: -0.5936 S33: 0.0665 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6076 19.4331 1.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.2526 REMARK 3 T33: 0.3979 T12: -0.0001 REMARK 3 T13: -0.0298 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 9.3909 L22: 5.9517 REMARK 3 L33: 2.9433 L12: 1.6123 REMARK 3 L13: -4.9744 L23: -1.9829 REMARK 3 S TENSOR REMARK 3 S11: 0.1689 S12: 0.0438 S13: 0.4544 REMARK 3 S21: 0.1203 S22: -0.1103 S23: 0.6338 REMARK 3 S31: -0.3819 S32: -0.4268 S33: -0.0128 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3634 14.9308 -5.1435 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.2563 REMARK 3 T33: 0.2953 T12: -0.0509 REMARK 3 T13: -0.0578 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 4.5823 L22: 2.9433 REMARK 3 L33: 2.0114 L12: 0.7520 REMARK 3 L13: 0.8506 L23: 1.8390 REMARK 3 S TENSOR REMARK 3 S11: -0.2467 S12: 0.4361 S13: 0.6049 REMARK 3 S21: -0.8187 S22: 0.0252 S23: 0.2562 REMARK 3 S31: -0.2211 S32: -0.2839 S33: 0.2133 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0449 7.0489 6.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.5540 REMARK 3 T33: 0.6766 T12: -0.1955 REMARK 3 T13: 0.0508 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.4430 L22: 1.7402 REMARK 3 L33: 4.3289 L12: 1.3716 REMARK 3 L13: 1.4361 L23: 0.3972 REMARK 3 S TENSOR REMARK 3 S11: -0.2961 S12: -0.4233 S13: -0.7219 REMARK 3 S21: -0.3692 S22: 0.1956 S23: 0.5227 REMARK 3 S31: 1.5417 S32: -0.9612 S33: 0.2361 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1812 9.1471 13.4486 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.1940 REMARK 3 T33: 0.2393 T12: -0.0323 REMARK 3 T13: 0.0149 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.1917 L22: 1.4225 REMARK 3 L33: 5.1355 L12: 0.7640 REMARK 3 L13: -0.7171 L23: -0.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: -0.1978 S13: 0.0051 REMARK 3 S21: 0.1256 S22: 0.0019 S23: 0.2100 REMARK 3 S31: 0.0073 S32: -0.3142 S33: -0.1057 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5586 3.9161 -7.6578 REMARK 3 T TENSOR REMARK 3 T11: 0.6034 T22: 0.6060 REMARK 3 T33: 0.4242 T12: 0.1183 REMARK 3 T13: 0.0715 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 7.7095 L22: 5.8415 REMARK 3 L33: 3.7247 L12: -6.4638 REMARK 3 L13: -2.3254 L23: 3.0827 REMARK 3 S TENSOR REMARK 3 S11: -0.3476 S12: 0.2892 S13: -0.6633 REMARK 3 S21: -0.5446 S22: 0.0406 S23: 0.1732 REMARK 3 S31: 0.2152 S32: 0.2736 S33: 0.1717 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 417 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9728 -20.9169 3.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.2883 REMARK 3 T33: 0.2994 T12: -0.0490 REMARK 3 T13: 0.0103 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.1547 L22: 3.4802 REMARK 3 L33: 2.5218 L12: -3.2405 REMARK 3 L13: -0.6620 L23: 1.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.5518 S13: -0.1908 REMARK 3 S21: 0.4493 S22: 0.2638 S23: -0.0073 REMARK 3 S31: 0.2983 S32: 0.3748 S33: -0.1407 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 417 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2045 24.9624 13.9264 REMARK 3 T TENSOR REMARK 3 T11: 0.5726 T22: 0.3419 REMARK 3 T33: 0.6014 T12: -0.1140 REMARK 3 T13: 0.0014 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.4936 L22: 5.3877 REMARK 3 L33: 2.9787 L12: -3.5576 REMARK 3 L13: 0.9555 L23: -1.3315 REMARK 3 S TENSOR REMARK 3 S11: -0.6350 S12: -0.2528 S13: 1.6838 REMARK 3 S21: 0.2053 S22: 0.3108 S23: -0.2959 REMARK 3 S31: -1.3398 S32: 0.5631 S33: 0.3716 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 4 through 9 or REMARK 3 resid 11 through 75 or resid 77 through REMARK 3 117)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 4 through 9 or REMARK 3 resid 11 through 75 or resid 77 through REMARK 3 117)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Q7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37749 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LITHIUM CHLORIDE, 0.1 M CITRATE, REMARK 280 20% PEG 6000, PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.03550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.21150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.21150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.55325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.21150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.21150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.51775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.21150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.21150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.55325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.21150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.21150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.51775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.03550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 PHE A 119 REMARK 465 GLY A 120 REMARK 465 MET A 121 REMARK 465 LYS A 122 REMARK 465 LEU A 123 REMARK 465 SER A 124 REMARK 465 VAL A 125 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 120 REMARK 465 MET B 121 REMARK 465 LYS B 122 REMARK 465 LEU B 123 REMARK 465 SER B 124 REMARK 465 VAL B 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 77 O HOH A 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 68.00 21.87 REMARK 500 SER B 90 93.64 69.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 8Q7K A 1 125 UNP Q9GZQ8 MLP3B_HUMAN 1 125 DBREF 8Q7K B 1 125 UNP Q9GZQ8 MLP3B_HUMAN 1 125 DBREF 8Q7K C 417 425 UNP Q8WZA9 IRGQ_HUMAN 417 425 DBREF 8Q7K D 417 425 UNP Q8WZA9 IRGQ_HUMAN 417 425 SEQRES 1 A 125 MET PRO SER GLU LYS THR PHE LYS GLN ARG ARG THR PHE SEQRES 2 A 125 GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG GLU GLN SEQRES 3 A 125 HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS SEQRES 4 A 125 GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR LYS PHE SEQRES 5 A 125 LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU ILE LYS SEQRES 6 A 125 ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN GLN ALA SEQRES 7 A 125 PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SER VAL SEQRES 8 A 125 SER THR PRO ILE SER GLU VAL TYR GLU SER GLU LYS ASP SEQRES 9 A 125 GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 10 A 125 THR PHE GLY MET LYS LEU SER VAL SEQRES 1 B 125 MET PRO SER GLU LYS THR PHE LYS GLN ARG ARG THR PHE SEQRES 2 B 125 GLU GLN ARG VAL GLU ASP VAL ARG LEU ILE ARG GLU GLN SEQRES 3 B 125 HIS PRO THR LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS SEQRES 4 B 125 GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR LYS PHE SEQRES 5 B 125 LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU ILE LYS SEQRES 6 B 125 ILE ILE ARG ARG ARG LEU GLN LEU ASN ALA ASN GLN ALA SEQRES 7 B 125 PHE PHE LEU LEU VAL ASN GLY HIS SER MET VAL SER VAL SEQRES 8 B 125 SER THR PRO ILE SER GLU VAL TYR GLU SER GLU LYS ASP SEQRES 9 B 125 GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 10 B 125 THR PHE GLY MET LYS LEU SER VAL SEQRES 1 C 9 GLU ASP GLU THR TRP GLU VAL LEU GLU SEQRES 1 D 9 GLU ASP GLU THR TRP GLU VAL LEU GLU HET EDO B 201 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *201(H2 O) HELIX 1 AA1 THR A 6 ARG A 11 1 6 HELIX 2 AA2 THR A 12 HIS A 27 1 16 HELIX 3 AA3 ASN A 59 LEU A 71 1 13 HELIX 4 AA4 PRO A 94 LYS A 103 1 10 HELIX 5 AA5 THR B 6 ARG B 11 1 6 HELIX 6 AA6 THR B 12 HIS B 27 1 16 HELIX 7 AA7 ASN B 59 LEU B 71 1 13 HELIX 8 AA8 PRO B 94 LYS B 103 1 10 SHEET 1 AA1 5 PHE A 80 LEU A 82 0 SHEET 2 AA1 5 LEU A 109 ALA A 114 -1 O VAL A 112 N LEU A 82 SHEET 3 AA1 5 LYS A 30 ARG A 37 1 N ILE A 34 O MET A 111 SHEET 4 AA1 5 LYS A 51 PRO A 55 -1 O VAL A 54 N ILE A 31 SHEET 5 AA1 5 GLU C 422 VAL C 423 1 O GLU C 422 N LEU A 53 SHEET 1 AA2 5 PHE B 80 VAL B 83 0 SHEET 2 AA2 5 LEU B 109 ALA B 114 -1 O VAL B 112 N LEU B 82 SHEET 3 AA2 5 ILE B 31 ARG B 37 1 N ILE B 34 O MET B 111 SHEET 4 AA2 5 LYS B 51 VAL B 54 -1 O PHE B 52 N VAL B 33 SHEET 5 AA2 5 TRP D 421 VAL D 423 1 O GLU D 422 N LEU B 53 CRYST1 68.423 68.423 118.071 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008469 0.00000 MTRIX1 1 0.648557 -0.761163 -0.002233 12.41083 1 MTRIX2 1 -0.761149 -0.648559 0.004845 26.01987 1 MTRIX3 1 -0.005136 -0.001443 -0.999986 16.76690 1 MTRIX1 2 0.674239 -0.723657 0.147388 9.80056 1 MTRIX2 2 -0.692932 -0.688926 -0.212664 26.49138 1 MTRIX3 2 0.255435 0.041257 -0.965946 12.62866 1