HEADER METAL BINDING PROTEIN 22-AUG-23 8QA7 TITLE CRYSTAL STRUCTURE OF HDAC6 CATALYTIC DOMAIN 2 FROM ZEBRAFISH IN TITLE 2 COMPLEX WITH BUFFER COMPONENT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HISTONE DEACETYLASE 6 (HDAC6) CATALYTIC DOMAIN 2 FROM COMPND 6 ZEBRAFISH. TWO MOLECULES IN THE ASYMMETRIC UNIT. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HDAC6, HISTONE DEACETYLASE 6, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SANDMARK,M.EK REVDAT 1 11-SEP-24 8QA7 0 JRNL AUTH J.SANDMARK,M.EK JRNL TITL CRYSTAL STRUCTURE OF HDAC6 CATALYTIC DOMAIN 2 FROM ZEBRAFISH JRNL TITL 2 IN COMPLEX WITH BUFFER COMPONENT. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 108176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.4570 REMARK 3 BIN FREE R VALUE SET COUNT : 400 REMARK 3 BIN FREE R VALUE : 0.4740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.527 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5799 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5222 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7883 ; 1.310 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12117 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 731 ; 5.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;33.919 ;23.022 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 926 ;12.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;18.922 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6506 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1225 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2876 ; 1.245 ; 2.567 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2875 ; 1.242 ; 2.566 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3596 ; 1.949 ; 3.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3597 ; 1.949 ; 3.845 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2923 ; 1.623 ; 2.803 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2923 ; 1.623 ; 2.803 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4279 ; 2.578 ; 4.132 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6375 ; 3.761 ;30.638 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6376 ; 3.760 ;30.640 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 66.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, 20% PEG3350, 2 MM NAAC 10 REMARK 280 MG/ML PROTEIN MIXED 1:1 WITH WELL SOLUTION CRYO 20% GLYCEROL + REMARK 280 WELL SOLUTION, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.69500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.18650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.69500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.18650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 524 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 521 O HOH B 901 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 531 63.04 63.02 REMARK 500 THR A 600 -92.08 -125.13 REMARK 500 ASN A 645 31.65 70.99 REMARK 500 LEU A 685 -60.77 -120.07 REMARK 500 GLN A 716 39.93 -140.49 REMARK 500 GLU A 742 -113.30 -112.97 REMARK 500 SER B 531 61.75 61.43 REMARK 500 CYS B 581 144.63 -170.40 REMARK 500 THR B 600 -97.56 -123.71 REMARK 500 GLN B 716 40.92 -140.98 REMARK 500 GLU B 742 -113.18 -112.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 801 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 71.6 REMARK 620 3 ASP A 612 O 100.0 97.0 REMARK 620 4 HIS A 614 O 164.7 93.3 79.1 REMARK 620 5 SER A 633 OG 85.2 111.3 151.3 103.0 REMARK 620 6 LEU A 634 O 76.3 141.4 68.0 116.7 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 HIS A 614 ND1 100.3 REMARK 620 3 ASP A 705 OD2 106.0 98.1 REMARK 620 4 EPE A 804 S 120.1 105.8 121.8 REMARK 620 5 EPE A 804 O2S 86.4 114.7 142.4 33.7 REMARK 620 6 EPE A 804 O3S 142.1 113.1 87.0 34.8 64.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 69.2 REMARK 620 3 VAL A 629 O 111.1 74.8 REMARK 620 4 TYR A 662 O 164.3 110.5 83.3 REMARK 620 5 HOH A 920 O 81.3 81.6 146.6 83.2 REMARK 620 6 HOH A 931 O 73.5 142.0 127.0 103.4 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 801 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 610 O REMARK 620 2 ASP B 610 OD1 72.6 REMARK 620 3 ASP B 612 O 98.3 96.6 REMARK 620 4 HIS B 614 O 164.6 92.5 79.0 REMARK 620 5 SER B 633 OG 84.7 111.4 151.3 105.1 REMARK 620 6 LEU B 634 O 76.0 141.8 66.9 115.9 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 612 OD1 REMARK 620 2 HIS B 614 ND1 99.1 REMARK 620 3 ASP B 705 OD2 105.6 96.2 REMARK 620 4 EPE B 804 S 119.5 109.4 122.1 REMARK 620 5 EPE B 804 O1S 138.7 120.3 83.0 39.1 REMARK 620 6 EPE B 804 O3S 83.0 115.6 145.6 36.6 70.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 623 O REMARK 620 2 ASP B 626 O 70.6 REMARK 620 3 VAL B 629 O 114.6 78.8 REMARK 620 4 TYR B 662 O 161.3 112.3 83.8 REMARK 620 5 HOH B 909 O 81.8 81.7 148.0 80.4 REMARK 620 6 HOH B 962 O 72.5 142.4 123.9 100.6 86.5 REMARK 620 N 1 2 3 4 5 DBREF 8QA7 A 442 798 UNP F8W4B7 F8W4B7_DANRE 442 798 DBREF 8QA7 B 442 798 UNP F8W4B7 F8W4B7_DANRE 442 798 SEQADV 8QA7 ALA A 441 UNP F8W4B7 EXPRESSION TAG SEQADV 8QA7 ALA B 441 UNP F8W4B7 EXPRESSION TAG SEQRES 1 A 358 ALA PRO ILE THR GLY LEU VAL TYR ASP GLN ARG MET MET SEQRES 2 A 358 LEU HIS HIS ASN MET TRP ASP SER HIS HIS PRO GLU LEU SEQRES 3 A 358 PRO GLN ARG ILE SER ARG ILE PHE SER ARG HIS GLU GLU SEQRES 4 A 358 LEU ARG LEU LEU SER ARG CYS HIS ARG ILE PRO ALA ARG SEQRES 5 A 358 LEU ALA THR GLU GLU GLU LEU ALA LEU CYS HIS SER SER SEQRES 6 A 358 LYS HIS ILE SER ILE ILE LYS SER SER GLU HIS MET LYS SEQRES 7 A 358 PRO ARG ASP LEU ASN ARG LEU GLY ASP GLU TYR ASN SER SEQRES 8 A 358 ILE PHE ILE SER ASN GLU SER TYR THR CYS ALA LEU LEU SEQRES 9 A 358 ALA ALA GLY SER CYS PHE ASN SER ALA GLN ALA ILE LEU SEQRES 10 A 358 THR GLY GLN VAL ARG ASN ALA VAL ALA ILE VAL ARG PRO SEQRES 11 A 358 PRO GLY HIS HIS ALA GLU LYS ASP THR ALA CYS GLY PHE SEQRES 12 A 358 CYS PHE PHE ASN THR ALA ALA LEU THR ALA ARG TYR ALA SEQRES 13 A 358 GLN SER ILE THR ARG GLU SER LEU ARG VAL LEU ILE VAL SEQRES 14 A 358 ASP TRP ASP VAL HIS HIS GLY ASN GLY THR GLN HIS ILE SEQRES 15 A 358 PHE GLU GLU ASP ASP SER VAL LEU TYR ILE SER LEU HIS SEQRES 16 A 358 ARG TYR GLU ASP GLY ALA PHE PHE PRO ASN SER GLU ASP SEQRES 17 A 358 ALA ASN TYR ASP LYS VAL GLY LEU GLY LYS GLY ARG GLY SEQRES 18 A 358 TYR ASN VAL ASN ILE PRO TRP ASN GLY GLY LYS MET GLY SEQRES 19 A 358 ASP PRO GLU TYR MET ALA ALA PHE HIS HIS LEU VAL MET SEQRES 20 A 358 PRO ILE ALA ARG GLU PHE ALA PRO GLU LEU VAL LEU VAL SEQRES 21 A 358 SER ALA GLY PHE ASP ALA ALA ARG GLY ASP PRO LEU GLY SEQRES 22 A 358 GLY PHE GLN VAL THR PRO GLU GLY TYR ALA HIS LEU THR SEQRES 23 A 358 HIS GLN LEU MET SER LEU ALA ALA GLY ARG VAL LEU ILE SEQRES 24 A 358 ILE LEU GLU GLY GLY TYR ASN LEU THR SER ILE SER GLU SEQRES 25 A 358 SER MET SER MET CYS THR SER MET LEU LEU GLY ASP SER SEQRES 26 A 358 PRO PRO SER LEU ASP HIS LEU THR PRO LEU LYS THR SER SEQRES 27 A 358 ALA THR VAL SER ILE ASN ASN VAL LEU ARG ALA HIS ALA SEQRES 28 A 358 PRO PHE TRP SER SER LEU ARG SEQRES 1 B 358 ALA PRO ILE THR GLY LEU VAL TYR ASP GLN ARG MET MET SEQRES 2 B 358 LEU HIS HIS ASN MET TRP ASP SER HIS HIS PRO GLU LEU SEQRES 3 B 358 PRO GLN ARG ILE SER ARG ILE PHE SER ARG HIS GLU GLU SEQRES 4 B 358 LEU ARG LEU LEU SER ARG CYS HIS ARG ILE PRO ALA ARG SEQRES 5 B 358 LEU ALA THR GLU GLU GLU LEU ALA LEU CYS HIS SER SER SEQRES 6 B 358 LYS HIS ILE SER ILE ILE LYS SER SER GLU HIS MET LYS SEQRES 7 B 358 PRO ARG ASP LEU ASN ARG LEU GLY ASP GLU TYR ASN SER SEQRES 8 B 358 ILE PHE ILE SER ASN GLU SER TYR THR CYS ALA LEU LEU SEQRES 9 B 358 ALA ALA GLY SER CYS PHE ASN SER ALA GLN ALA ILE LEU SEQRES 10 B 358 THR GLY GLN VAL ARG ASN ALA VAL ALA ILE VAL ARG PRO SEQRES 11 B 358 PRO GLY HIS HIS ALA GLU LYS ASP THR ALA CYS GLY PHE SEQRES 12 B 358 CYS PHE PHE ASN THR ALA ALA LEU THR ALA ARG TYR ALA SEQRES 13 B 358 GLN SER ILE THR ARG GLU SER LEU ARG VAL LEU ILE VAL SEQRES 14 B 358 ASP TRP ASP VAL HIS HIS GLY ASN GLY THR GLN HIS ILE SEQRES 15 B 358 PHE GLU GLU ASP ASP SER VAL LEU TYR ILE SER LEU HIS SEQRES 16 B 358 ARG TYR GLU ASP GLY ALA PHE PHE PRO ASN SER GLU ASP SEQRES 17 B 358 ALA ASN TYR ASP LYS VAL GLY LEU GLY LYS GLY ARG GLY SEQRES 18 B 358 TYR ASN VAL ASN ILE PRO TRP ASN GLY GLY LYS MET GLY SEQRES 19 B 358 ASP PRO GLU TYR MET ALA ALA PHE HIS HIS LEU VAL MET SEQRES 20 B 358 PRO ILE ALA ARG GLU PHE ALA PRO GLU LEU VAL LEU VAL SEQRES 21 B 358 SER ALA GLY PHE ASP ALA ALA ARG GLY ASP PRO LEU GLY SEQRES 22 B 358 GLY PHE GLN VAL THR PRO GLU GLY TYR ALA HIS LEU THR SEQRES 23 B 358 HIS GLN LEU MET SER LEU ALA ALA GLY ARG VAL LEU ILE SEQRES 24 B 358 ILE LEU GLU GLY GLY TYR ASN LEU THR SER ILE SER GLU SEQRES 25 B 358 SER MET SER MET CYS THR SER MET LEU LEU GLY ASP SER SEQRES 26 B 358 PRO PRO SER LEU ASP HIS LEU THR PRO LEU LYS THR SER SEQRES 27 B 358 ALA THR VAL SER ILE ASN ASN VAL LEU ARG ALA HIS ALA SEQRES 28 B 358 PRO PHE TRP SER SER LEU ARG HET K A 801 1 HET K A 802 1 HET ZN A 803 1 HET EPE A 804 15 HET K B 801 1 HET K B 802 1 HET ZN B 803 1 HET EPE B 804 15 HETNAM K POTASSIUM ION HETNAM ZN ZINC ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 K 4(K 1+) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 EPE 2(C8 H18 N2 O4 S) FORMUL 11 HOH *228(H2 O) HELIX 1 AA1 ASP A 449 LEU A 454 5 6 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 514 1 11 HELIX 6 AA6 GLU A 515 MET A 517 5 3 HELIX 7 AA7 LYS A 518 TYR A 529 1 12 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 ILE A 599 1 13 HELIX 10 AB1 GLY A 616 GLU A 624 1 9 HELIX 11 AB2 GLU A 638 ALA A 641 5 4 HELIX 12 AB3 SER A 646 ASN A 650 5 5 HELIX 13 AB4 LEU A 656 ARG A 660 5 5 HELIX 14 AB5 GLY A 674 LEU A 685 1 12 HELIX 15 AB6 LEU A 685 ALA A 694 1 10 HELIX 16 AB7 THR A 718 MET A 730 1 13 HELIX 17 AB8 SER A 731 GLY A 735 5 5 HELIX 18 AB9 ASN A 746 LEU A 762 1 17 HELIX 19 AC1 LYS A 776 ALA A 791 1 16 HELIX 20 AC2 TRP A 794 ARG A 798 5 5 HELIX 21 AC3 GLN B 450 HIS B 455 5 6 HELIX 22 AC4 PRO B 467 LEU B 480 1 14 HELIX 23 AC5 LEU B 482 CYS B 486 5 5 HELIX 24 AC6 THR B 495 ALA B 500 1 6 HELIX 25 AC7 SER B 504 SER B 514 1 11 HELIX 26 AC8 GLU B 515 MET B 517 5 3 HELIX 27 AC9 LYS B 518 GLU B 528 1 11 HELIX 28 AD1 GLU B 537 THR B 558 1 22 HELIX 29 AD2 ASN B 587 ILE B 599 1 13 HELIX 30 AD3 GLY B 616 GLU B 624 1 9 HELIX 31 AD4 SER B 646 ASN B 650 5 5 HELIX 32 AD5 LEU B 656 ARG B 660 5 5 HELIX 33 AD6 GLY B 674 LEU B 685 1 12 HELIX 34 AD7 LEU B 685 ALA B 694 1 10 HELIX 35 AD8 THR B 718 MET B 730 1 13 HELIX 36 AD9 SER B 731 GLY B 735 5 5 HELIX 37 AE1 ASN B 746 LEU B 762 1 17 HELIX 38 AE2 LYS B 776 ALA B 791 1 16 HELIX 39 AE3 TRP B 794 ARG B 798 5 5 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 VAL A 447 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ALA A 566 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N VAL A 700 O ILE A 740 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O LEU A 630 N ILE A 608 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O VAL A 664 N TYR A 631 SHEET 1 AA2 8 HIS B 487 ARG B 488 0 SHEET 2 AA2 8 THR B 444 TYR B 448 1 N THR B 444 O HIS B 487 SHEET 3 AA2 8 ASN B 563 ILE B 567 1 O ASN B 563 N GLY B 445 SHEET 4 AA2 8 VAL B 737 LEU B 741 1 O ILE B 739 N ALA B 566 SHEET 5 AA2 8 LEU B 697 ALA B 702 1 N VAL B 700 O ILE B 740 SHEET 6 AA2 8 VAL B 606 ASP B 610 1 N LEU B 607 O LEU B 699 SHEET 7 AA2 8 VAL B 629 ARG B 636 1 O ILE B 632 N ASP B 610 SHEET 8 AA2 8 ASN B 663 TRP B 668 1 O VAL B 664 N TYR B 631 LINK O ASP A 610 K K A 801 1555 1555 2.83 LINK OD1 ASP A 610 K K A 801 1555 1555 2.74 LINK O ASP A 612 K K A 801 1555 1555 2.59 LINK OD1 ASP A 612 ZN ZN A 803 1555 1555 2.06 LINK O HIS A 614 K K A 801 1555 1555 2.76 LINK ND1 HIS A 614 ZN ZN A 803 1555 1555 2.05 LINK O PHE A 623 K K A 802 1555 1555 2.88 LINK O ASP A 626 K K A 802 1555 1555 3.20 LINK O VAL A 629 K K A 802 1555 1555 2.91 LINK OG SER A 633 K K A 801 1555 1555 2.81 LINK O LEU A 634 K K A 801 1555 1555 2.80 LINK O TYR A 662 K K A 802 1555 1555 2.88 LINK OD2 ASP A 705 ZN ZN A 803 1555 1555 1.97 LINK K K A 802 O HOH A 920 1555 1555 2.74 LINK K K A 802 O HOH A 931 1555 1555 2.90 LINK ZN ZN A 803 S EPE A 804 1555 1555 2.59 LINK ZN ZN A 803 O2S EPE A 804 1555 1555 2.38 LINK ZN ZN A 803 O3S EPE A 804 1555 1555 2.21 LINK O ASP B 610 K K B 801 1555 1555 2.84 LINK OD1 ASP B 610 K K B 801 1555 1555 2.76 LINK O ASP B 612 K K B 801 1555 1555 2.61 LINK OD1 ASP B 612 ZN ZN B 803 1555 1555 2.10 LINK O HIS B 614 K K B 801 1555 1555 2.78 LINK ND1 HIS B 614 ZN ZN B 803 1555 1555 2.05 LINK O PHE B 623 K K B 802 1555 1555 2.83 LINK O ASP B 626 K K B 802 1555 1555 3.13 LINK O VAL B 629 K K B 802 1555 1555 2.82 LINK OG SER B 633 K K B 801 1555 1555 2.87 LINK O LEU B 634 K K B 801 1555 1555 2.75 LINK O TYR B 662 K K B 802 1555 1555 2.94 LINK OD2 ASP B 705 ZN ZN B 803 1555 1555 1.98 LINK K K B 802 O HOH B 909 1555 1555 2.79 LINK K K B 802 O HOH B 962 1555 1555 2.93 LINK ZN ZN B 803 S EPE B 804 1555 1555 2.32 LINK ZN ZN B 803 O1S EPE B 804 1555 1555 1.98 LINK ZN ZN B 803 O3S EPE B 804 1555 1555 2.31 CISPEP 1 ARG A 569 PRO A 570 0 -7.48 CISPEP 2 PHE A 643 PRO A 644 0 10.49 CISPEP 3 ARG B 569 PRO B 570 0 -6.85 CISPEP 4 PHE B 643 PRO B 644 0 11.56 CRYST1 75.390 92.373 96.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010396 0.00000