HEADER UNKNOWN FUNCTION 23-AUG-23 8QAS TITLE CONFORMATIONS OF MACROCYCLIC PEPTIDES SAMPLED BY EXACT NOES: MODELS TITLE 2 FOR CELL-PERMEABILITY. NMR STRUCTURE OF OMPHALOTIN A IN METHANOL / TITLE 3 WATER INDOLEOUT CONFORMATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR; COMPND 3 CHAIN: Z; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_TAXID: 72120; SOURCE 4 GENE: DSM3398; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115 KEYWDS CYCLIC PEPTIDE, EXACT NOES, CELL-PERMEABILITY, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR S.H.RUEDISSER,E.MATABARO,L.SONDEREGGER,P.GUENTERT,M.KUENZLER, AUTHOR 2 A.D.GOSSERT REVDAT 4 13-NOV-24 8QAS 1 REMARK REVDAT 3 03-JAN-24 8QAS 1 JRNL REVDAT 2 20-DEC-23 8QAS 1 JRNL REVDAT 1 06-DEC-23 8QAS 0 JRNL AUTH S.H.RUDISSER,E.MATABARO,L.SONDEREGGER,P.GUNTERT,M.KUNZLER, JRNL AUTH 2 A.D.GOSSERT JRNL TITL CONFORMATIONS OF MACROCYCLIC PEPTIDES SAMPLED BY NUCLEAR JRNL TITL 2 MAGNETIC RESONANCE: MODELS FOR CELL-PERMEABILITY. JRNL REF J.AM.CHEM.SOC. V. 145 27601 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 38062770 JRNL DOI 10.1021/JACS.3C09367 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132886. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 20 UM OMPHALOTIN A, METHANOL / REMARK 210 WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, CYANA, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MVA Z 7 75.79 -162.55 REMARK 500 1 IML Z 11 -110.37 -122.79 REMARK 500 2 MVA Z 7 54.76 -140.00 REMARK 500 2 IML Z 11 94.45 77.18 REMARK 500 3 MVA Z 5 72.11 48.93 REMARK 500 3 MVA Z 7 69.13 -153.59 REMARK 500 3 IML Z 8 45.30 -141.22 REMARK 500 3 VAL Z 10 92.25 65.10 REMARK 500 4 MVA Z 4 78.56 53.50 REMARK 500 4 MVA Z 7 -82.54 -106.82 REMARK 500 4 IML Z 8 157.88 69.08 REMARK 500 4 VAL Z 10 144.21 69.05 REMARK 500 4 IML Z 11 116.36 85.89 REMARK 500 5 MVA Z 7 -91.62 -99.87 REMARK 500 5 IML Z 8 126.59 72.76 REMARK 500 5 IML Z 11 128.85 71.17 REMARK 500 6 MVA Z 4 85.74 47.98 REMARK 500 6 IML Z 11 99.80 65.57 REMARK 500 7 IML Z 11 -63.65 123.77 REMARK 500 8 MVA Z 5 -82.91 -68.07 REMARK 500 8 IML Z 11 101.29 68.09 REMARK 500 9 MVA Z 7 -84.06 -149.82 REMARK 500 9 IML Z 11 111.70 69.27 REMARK 500 10 MVA Z 7 69.92 -158.95 REMARK 500 10 IML Z 11 111.40 74.76 REMARK 500 11 MVA Z 4 79.66 -119.60 REMARK 500 11 MVA Z 7 -50.41 114.41 REMARK 500 11 IML Z 8 76.47 60.37 REMARK 500 11 IML Z 11 97.42 71.69 REMARK 500 12 MVA Z 7 91.14 83.63 REMARK 500 12 VAL Z 10 64.78 -155.24 REMARK 500 12 IML Z 11 47.35 -145.60 REMARK 500 14 MVA Z 4 101.69 58.45 REMARK 500 14 IML Z 11 99.00 67.59 REMARK 500 15 IML Z 11 94.13 69.83 REMARK 500 16 MVA Z 4 75.85 -119.13 REMARK 500 16 IML Z 11 120.89 71.87 REMARK 500 18 IML Z 11 95.39 75.80 REMARK 500 19 MVA Z 7 78.72 77.83 REMARK 500 19 IML Z 8 -87.78 -141.44 REMARK 500 19 IML Z 11 102.24 66.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MVA Z 4 MVA Z 5 5 149.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34849 RELATED DB: BMRB REMARK 900 CONFORMATIONS OF MACROCYCLIC PEPTIDES SAMPLED BY EXACT NOES: MODELS REMARK 900 FOR CELL-PERMEABILITY. NMR STRUCTURE OF OMPHALOTIN A IN METHANOL / REMARK 900 WATER INDOLEOUT CONFORMATION. DBREF 8QAS Z 1 12 PDB 8QAS 8QAS 1 12 SEQRES 1 Z 12 TRP MVA ILE MVA MVA SAR MVA IML SAR VAL IML SAR HET MVA Z 2 19 HET MVA Z 4 19 HET MVA Z 5 19 HET SAR Z 6 10 HET MVA Z 7 19 HET IML Z 8 22 HET SAR Z 9 10 HET IML Z 11 22 HET SAR Z 12 10 HETNAM MVA N-METHYLVALINE HETNAM SAR SARCOSINE HETNAM IML N-METHYL-ISOLEUCINE FORMUL 1 MVA 4(C6 H13 N O2) FORMUL 1 SAR 3(C3 H7 N O2) FORMUL 1 IML 2(C7 H15 N O2) LINK C TRP Z 1 N MVA Z 2 1555 1555 1.39 LINK N TRP Z 1 C SAR Z 12 1555 1555 1.33 LINK C MVA Z 2 N ILE Z 3 1555 1555 1.33 LINK C ILE Z 3 N MVA Z 4 1555 1555 1.39 LINK C MVA Z 4 N MVA Z 5 1555 1555 1.40 LINK C MVA Z 5 N SAR Z 6 1555 1555 1.40 LINK C SAR Z 6 N MVA Z 7 1555 1555 1.38 LINK C MVA Z 7 N IML Z 8 1555 1555 1.41 LINK C IML Z 8 N SAR Z 9 1555 1555 1.40 LINK C SAR Z 9 N VAL Z 10 1555 1555 1.34 LINK C VAL Z 10 N IML Z 11 1555 1555 1.40 LINK C IML Z 11 N SAR Z 12 1555 1555 1.41 CISPEP 1 TRP Z 1 MVA Z 2 1 -8.35 CISPEP 2 MVA Z 7 IML Z 8 1 2.11 CISPEP 3 IML Z 11 SAR Z 12 1 1.41 CISPEP 4 TRP Z 1 MVA Z 2 2 -5.71 CISPEP 5 TRP Z 1 MVA Z 2 3 -0.52 CISPEP 6 TRP Z 1 MVA Z 2 4 0.80 CISPEP 7 SAR Z 6 MVA Z 7 4 -6.86 CISPEP 8 IML Z 8 SAR Z 9 4 -1.22 CISPEP 9 TRP Z 1 MVA Z 2 5 1.68 CISPEP 10 SAR Z 6 MVA Z 7 5 -3.22 CISPEP 11 IML Z 11 SAR Z 12 5 4.53 CISPEP 12 TRP Z 1 MVA Z 2 6 -5.07 CISPEP 13 SAR Z 6 MVA Z 7 6 -8.39 CISPEP 14 TRP Z 1 MVA Z 2 7 1.26 CISPEP 15 IML Z 8 SAR Z 9 7 -0.33 CISPEP 16 IML Z 11 SAR Z 12 7 2.97 CISPEP 17 TRP Z 1 MVA Z 2 8 0.34 CISPEP 18 SAR Z 6 MVA Z 7 8 -6.82 CISPEP 19 TRP Z 1 MVA Z 2 9 -6.60 CISPEP 20 MVA Z 5 SAR Z 6 9 -8.91 CISPEP 21 MVA Z 7 IML Z 8 9 -3.07 CISPEP 22 TRP Z 1 MVA Z 2 10 2.05 CISPEP 23 TRP Z 1 MVA Z 2 11 -6.91 CISPEP 24 IML Z 8 SAR Z 9 11 -1.73 CISPEP 25 TRP Z 1 MVA Z 2 12 0.15 CISPEP 26 MVA Z 7 IML Z 8 12 9.38 CISPEP 27 TRP Z 1 MVA Z 2 13 0.62 CISPEP 28 TRP Z 1 MVA Z 2 14 2.54 CISPEP 29 MVA Z 5 SAR Z 6 14 2.64 CISPEP 30 SAR Z 6 MVA Z 7 14 -0.65 CISPEP 31 TRP Z 1 MVA Z 2 15 -6.28 CISPEP 32 TRP Z 1 MVA Z 2 16 -6.81 CISPEP 33 IML Z 8 SAR Z 9 16 1.25 CISPEP 34 TRP Z 1 MVA Z 2 17 1.62 CISPEP 35 TRP Z 1 MVA Z 2 18 -6.05 CISPEP 36 TRP Z 1 MVA Z 2 19 -5.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1