HEADER HYDROLASE 25-AUG-23 8QC5 TITLE CRYSTAL STRUCTURE OF NAD-DEPENDENT GLYCOSIDE HYDROLASE FROM TITLE 2 ARTHROBACTER SP. U41 IN COMPLEX WITH NAD+ COFACTOR AND CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP. U41; SOURCE 3 ORGANISM_TAXID: 1849032; SOURCE 4 GENE: ASPU41_10185; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NAD(H)-DEPENDENT, GLYCOSIDE HYDROLASE, SULFOQUINOVOSE, KEYWDS 2 SULFOGLYCOLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,G.J.DAVIES REVDAT 2 10-JAN-24 8QC5 1 JRNL REVDAT 1 27-DEC-23 8QC5 0 JRNL AUTH A.KAUR,I.B.PICKLES,M.SHARMA,N.MADEIDO SOLER,N.E.SCOTT, JRNL AUTH 2 S.J.PIDOT,E.D.GODDARD-BORGER,G.J.DAVIES,S.J.WILLIAMS JRNL TITL WIDESPREAD FAMILY OF NAD + -DEPENDENT SULFOQUINOVOSIDASES AT JRNL TITL 2 THE GATEWAY TO SULFOQUINOVOSE CATABOLISM. JRNL REF J.AM.CHEM.SOC. V. 145 28216 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 38100472 JRNL DOI 10.1021/JACS.3C11126 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.34000 REMARK 3 B22 (A**2) : -3.99000 REMARK 3 B33 (A**2) : -2.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5777 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5337 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7879 ; 1.336 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12286 ; 0.455 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 7.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ;15.251 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;15.367 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 902 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6749 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2910 ; 2.340 ; 3.036 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2910 ; 2.339 ; 3.037 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3634 ; 3.258 ; 5.446 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3635 ; 3.258 ; 5.447 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2867 ; 3.227 ; 3.224 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2864 ; 3.224 ; 3.221 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4246 ; 4.550 ; 5.824 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 24467 ; 6.064 ;36.640 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 24468 ; 6.064 ;36.640 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292132664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 1.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS INCUBATED WITH 2M M NAD+. REMARK 280 CRYSTALS WERE GROWN IN WELLS CONTAINING 1.8 M TRIAMMONIUM REMARK 280 CITRATE PH7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.43150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.65350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.40850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.65350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.43150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.40850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 SER A 373 REMARK 465 ALA A 374 REMARK 465 ASN A 375 REMARK 465 SER A 376 REMARK 465 ALA A 377 REMARK 465 VAL A 378 REMARK 465 SER A 379 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 ALA B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 SER B 373 REMARK 465 ALA B 374 REMARK 465 ASN B 375 REMARK 465 SER B 376 REMARK 465 ALA B 377 REMARK 465 VAL B 378 REMARK 465 SER B 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 68 OE1 OE2 REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 242 CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 SER A 290 OG REMARK 470 GLU A 313 OE1 OE2 REMARK 470 ARG A 367 CD NE CZ NH1 NH2 REMARK 470 LEU A 372 CG CD1 CD2 REMARK 470 ARG B 10 NE CZ NH1 NH2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLN B 98 CG CD OE1 NE2 REMARK 470 GLN B 147 CD OE1 NE2 REMARK 470 LYS B 153 CE NZ REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 242 CE NZ REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 470 GLU B 289 CG CD OE1 OE2 REMARK 470 SER B 290 OG REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 ARG B 361 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 367 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 370 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 132.65 -171.86 REMARK 500 VAL A 217 -44.60 -135.65 REMARK 500 ASP A 288 50.78 -97.18 REMARK 500 PRO B 108 137.75 -37.35 REMARK 500 VAL B 217 -44.91 -135.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 107 PRO B 108 -63.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 166 0.09 SIDE CHAIN REMARK 500 ARG A 361 0.09 SIDE CHAIN REMARK 500 ARG B 13 0.07 SIDE CHAIN REMARK 500 ARG B 166 0.09 SIDE CHAIN REMARK 500 ARG B 199 0.15 SIDE CHAIN REMARK 500 ARG B 245 0.28 SIDE CHAIN REMARK 500 ARG B 333 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS B 107 -12.30 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8QC5 A 1 379 UNP A0A1C9WRL0_9MICC DBREF2 8QC5 A A0A1C9WRL0 1 379 DBREF1 8QC5 B 1 379 UNP A0A1C9WRL0_9MICC DBREF2 8QC5 B A0A1C9WRL0 1 379 SEQADV 8QC5 MET A -12 UNP A0A1C9WRL INITIATING METHIONINE SEQADV 8QC5 GLY A -11 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER A -10 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER A -9 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS A -8 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS A -7 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS A -6 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS A -5 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS A -4 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS A -3 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER A -2 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER A -1 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 GLY A 0 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 MET B -12 UNP A0A1C9WRL INITIATING METHIONINE SEQADV 8QC5 GLY B -11 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER B -10 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER B -9 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS B -8 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS B -7 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS B -6 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS B -5 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS B -4 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 HIS B -3 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER B -2 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 SER B -1 UNP A0A1C9WRL EXPRESSION TAG SEQADV 8QC5 GLY B 0 UNP A0A1C9WRL EXPRESSION TAG SEQRES 1 A 392 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 392 MET SER LEU PRO THR ALA GLU ALA VAL ARG THR ILE ARG SEQRES 3 A 392 TYR GLY LEU ILE GLY ALA GLY HIS MET ALA ARG GLU HIS SEQRES 4 A 392 VAL ARG ASN LEU ALA LEU ILE PRO GLY SER LEU ILE THR SEQRES 5 A 392 ALA VAL SER ASP PRO GLN PRO SER SER LEU GLU GLU THR SEQRES 6 A 392 VAL ALA GLU ILE GLY TYR GLU VAL THR THR PHE PRO ASP SEQRES 7 A 392 HIS ARG GLU LEU LEU VAL SER GLY LEU VAL ASP ALA LEU SEQRES 8 A 392 VAL ILE ALA SER PRO ASN ASP THR HIS LEU ASP ILE LEU SEQRES 9 A 392 LYS ASP ILE PHE SER ASN GLN MET LYS LEU PRO VAL LEU SEQRES 10 A 392 VAL GLU LYS PRO VAL CYS THR THR ALA ALA GLN ALA ASP SEQRES 11 A 392 GLU LEU GLU SER LEU ALA ALA GLY TYR SER ALA PRO VAL SEQRES 12 A 392 TRP VAL ALA MET GLU TYR ARG TYR MET PRO PRO VAL GLN SEQRES 13 A 392 GLU LEU ILE GLN ALA ALA HIS GLY GLY LYS LEU GLY ASN SEQRES 14 A 392 VAL PHE MET LEU SER ILE VAL GLU HIS ARG PHE PRO PHE SEQRES 15 A 392 LEU HIS LYS VAL ASP ALA TRP ASN ARG PHE ASN GLU ARG SEQRES 16 A 392 THR GLY GLY THR LEU VAL GLU LYS CYS CYS HIS PHE PHE SEQRES 17 A 392 ASP LEU MET ARG LEU ILE LEU GLN ASP GLU PRO THR ARG SEQRES 18 A 392 ILE TYR ALA SER GLY GLY HIS ASP VAL ASN HIS MET ASP SEQRES 19 A 392 GLU LEU TYR GLU GLY ARG VAL SER ASP MET ILE ASP ASN SEQRES 20 A 392 ALA TYR VAL VAL VAL ASP PHE LYS SER GLY ARG ARG ALA SEQRES 21 A 392 MET LEU GLU LEU SER MET PHE ALA GLU GLY SER LYS PHE SEQRES 22 A 392 GLN GLU ARG ILE SER ILE VAL GLY ASP ALA ALA LYS ILE SEQRES 23 A 392 GLU CYS LEU ILE PRO VAL ALA ALA SER HIS TRP ILE GLU SEQRES 24 A 392 GLY ASP GLU SER GLU ALA VAL VAL GLU PHE SER PRO ARG SEQRES 25 A 392 SER PRO LEU GLY PRO GLU THR HIS GLU VAL PRO VAL ASP SEQRES 26 A 392 GLU ALA VAL LEU ALA ALA GLY ALA HIS HIS GLY SER THR SEQRES 27 A 392 TYR TYR GLU HIS LEU GLY TYR ARG LYS ALA ILE LEU GLY SEQRES 28 A 392 GLU GLY PRO VAL GLU VAL THR VAL ALA ASP GLY LEU GLN SEQRES 29 A 392 SER VAL ARG MET GLY LEU ALA ALA GLU ARG SER ILE ILE SEQRES 30 A 392 GLU GLY ARG PRO VAL GLU LEU LEU SER ALA ASN SER ALA SEQRES 31 A 392 VAL SER SEQRES 1 B 392 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 392 MET SER LEU PRO THR ALA GLU ALA VAL ARG THR ILE ARG SEQRES 3 B 392 TYR GLY LEU ILE GLY ALA GLY HIS MET ALA ARG GLU HIS SEQRES 4 B 392 VAL ARG ASN LEU ALA LEU ILE PRO GLY SER LEU ILE THR SEQRES 5 B 392 ALA VAL SER ASP PRO GLN PRO SER SER LEU GLU GLU THR SEQRES 6 B 392 VAL ALA GLU ILE GLY TYR GLU VAL THR THR PHE PRO ASP SEQRES 7 B 392 HIS ARG GLU LEU LEU VAL SER GLY LEU VAL ASP ALA LEU SEQRES 8 B 392 VAL ILE ALA SER PRO ASN ASP THR HIS LEU ASP ILE LEU SEQRES 9 B 392 LYS ASP ILE PHE SER ASN GLN MET LYS LEU PRO VAL LEU SEQRES 10 B 392 VAL GLU LYS PRO VAL CYS THR THR ALA ALA GLN ALA ASP SEQRES 11 B 392 GLU LEU GLU SER LEU ALA ALA GLY TYR SER ALA PRO VAL SEQRES 12 B 392 TRP VAL ALA MET GLU TYR ARG TYR MET PRO PRO VAL GLN SEQRES 13 B 392 GLU LEU ILE GLN ALA ALA HIS GLY GLY LYS LEU GLY ASN SEQRES 14 B 392 VAL PHE MET LEU SER ILE VAL GLU HIS ARG PHE PRO PHE SEQRES 15 B 392 LEU HIS LYS VAL ASP ALA TRP ASN ARG PHE ASN GLU ARG SEQRES 16 B 392 THR GLY GLY THR LEU VAL GLU LYS CYS CYS HIS PHE PHE SEQRES 17 B 392 ASP LEU MET ARG LEU ILE LEU GLN ASP GLU PRO THR ARG SEQRES 18 B 392 ILE TYR ALA SER GLY GLY HIS ASP VAL ASN HIS MET ASP SEQRES 19 B 392 GLU LEU TYR GLU GLY ARG VAL SER ASP MET ILE ASP ASN SEQRES 20 B 392 ALA TYR VAL VAL VAL ASP PHE LYS SER GLY ARG ARG ALA SEQRES 21 B 392 MET LEU GLU LEU SER MET PHE ALA GLU GLY SER LYS PHE SEQRES 22 B 392 GLN GLU ARG ILE SER ILE VAL GLY ASP ALA ALA LYS ILE SEQRES 23 B 392 GLU CYS LEU ILE PRO VAL ALA ALA SER HIS TRP ILE GLU SEQRES 24 B 392 GLY ASP GLU SER GLU ALA VAL VAL GLU PHE SER PRO ARG SEQRES 25 B 392 SER PRO LEU GLY PRO GLU THR HIS GLU VAL PRO VAL ASP SEQRES 26 B 392 GLU ALA VAL LEU ALA ALA GLY ALA HIS HIS GLY SER THR SEQRES 27 B 392 TYR TYR GLU HIS LEU GLY TYR ARG LYS ALA ILE LEU GLY SEQRES 28 B 392 GLU GLY PRO VAL GLU VAL THR VAL ALA ASP GLY LEU GLN SEQRES 29 B 392 SER VAL ARG MET GLY LEU ALA ALA GLU ARG SER ILE ILE SEQRES 30 B 392 GLU GLY ARG PRO VAL GLU LEU LEU SER ALA ASN SER ALA SEQRES 31 B 392 VAL SER HET NAD A 401 44 HET CIT A 402 13 HET NAD B 401 44 HET CIT B 402 13 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CIT CITRIC ACID FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 7 HOH *245(H2 O) HELIX 1 AA1 GLY A 20 ALA A 31 1 12 HELIX 2 AA2 GLN A 45 GLY A 57 1 13 HELIX 3 AA3 ASP A 65 VAL A 71 1 7 HELIX 4 AA4 PRO A 83 ASP A 85 5 3 HELIX 5 AA5 THR A 86 ASN A 97 1 12 HELIX 6 AA6 THR A 112 GLY A 125 1 14 HELIX 7 AA7 GLU A 135 TYR A 138 5 4 HELIX 8 AA8 MET A 139 GLY A 151 1 13 HELIX 9 AA9 LYS A 172 TRP A 176 5 5 HELIX 10 AB1 PHE A 179 GLY A 184 1 6 HELIX 11 AB2 GLY A 185 LYS A 190 1 6 HELIX 12 AB3 CYS A 191 GLN A 203 1 13 HELIX 13 AB4 ALA A 280 TRP A 284 5 5 HELIX 14 AB5 ASP A 312 ALA A 318 1 7 HELIX 15 AB6 GLY A 323 LEU A 337 1 15 HELIX 16 AB7 THR A 345 GLY A 366 1 22 HELIX 17 AB8 GLY B 20 ALA B 31 1 12 HELIX 18 AB9 GLN B 45 GLY B 57 1 13 HELIX 19 AC1 ASP B 65 VAL B 71 1 7 HELIX 20 AC2 PRO B 83 ASP B 85 5 3 HELIX 21 AC3 THR B 86 SER B 96 1 11 HELIX 22 AC4 THR B 112 GLY B 125 1 14 HELIX 23 AC5 GLU B 135 TYR B 138 5 4 HELIX 24 AC6 MET B 139 GLY B 151 1 13 HELIX 25 AC7 LYS B 172 ARG B 178 5 7 HELIX 26 AC8 PHE B 179 GLY B 184 1 6 HELIX 27 AC9 GLY B 185 LYS B 190 1 6 HELIX 28 AD1 CYS B 191 GLN B 203 1 13 HELIX 29 AD2 ALA B 280 TRP B 284 5 5 HELIX 30 AD3 ASP B 312 ALA B 318 1 7 HELIX 31 AD4 GLY B 323 LEU B 337 1 15 HELIX 32 AD5 THR B 345 GLY B 366 1 22 SHEET 1 AA1 6 THR A 61 PHE A 63 0 SHEET 2 AA1 6 SER A 36 SER A 42 1 N THR A 39 O THR A 61 SHEET 3 AA1 6 ILE A 12 ILE A 17 1 N TYR A 14 O LEU A 37 SHEET 4 AA1 6 ALA A 77 ILE A 80 1 O VAL A 79 N ILE A 17 SHEET 5 AA1 6 VAL A 103 VAL A 105 1 O LEU A 104 N ILE A 80 SHEET 6 AA1 6 VAL A 130 VAL A 132 1 O TRP A 131 N VAL A 103 SHEET 1 AA2 9 GLU A 305 VAL A 309 0 SHEET 2 AA2 9 ALA A 292 PRO A 298 -1 N PHE A 296 O GLU A 305 SHEET 3 AA2 9 ALA A 271 PRO A 278 -1 N LYS A 272 O SER A 297 SHEET 4 AA2 9 PHE A 260 GLY A 268 -1 N ILE A 266 O ILE A 273 SHEET 5 AA2 9 VAL A 157 HIS A 165 -1 N VAL A 163 O ARG A 263 SHEET 6 AA2 9 ARG A 246 SER A 252 1 O GLU A 250 N GLU A 164 SHEET 7 AA2 9 ASN A 234 PHE A 241 -1 N VAL A 239 O ALA A 247 SHEET 8 AA2 9 PRO A 206 GLY A 214 -1 N TYR A 210 O VAL A 238 SHEET 9 AA2 9 VAL A 369 GLU A 370 -1 O VAL A 369 N ILE A 209 SHEET 1 AA3 6 THR B 61 PHE B 63 0 SHEET 2 AA3 6 SER B 36 SER B 42 1 N THR B 39 O THR B 61 SHEET 3 AA3 6 ILE B 12 ILE B 17 1 N TYR B 14 O LEU B 37 SHEET 4 AA3 6 ALA B 77 ILE B 80 1 O VAL B 79 N ILE B 17 SHEET 5 AA3 6 VAL B 103 GLU B 106 1 O LEU B 104 N ILE B 80 SHEET 6 AA3 6 VAL B 130 ALA B 133 1 O TRP B 131 N VAL B 103 SHEET 1 AA4 9 GLU B 305 VAL B 309 0 SHEET 2 AA4 9 ALA B 292 PRO B 298 -1 N PHE B 296 O GLU B 305 SHEET 3 AA4 9 ALA B 271 PRO B 278 -1 N LYS B 272 O SER B 297 SHEET 4 AA4 9 PHE B 260 GLY B 268 -1 N ILE B 266 O ILE B 273 SHEET 5 AA4 9 VAL B 157 HIS B 165 -1 N VAL B 163 O ARG B 263 SHEET 6 AA4 9 ARG B 246 SER B 252 1 O GLU B 250 N GLU B 164 SHEET 7 AA4 9 ASN B 234 PHE B 241 -1 N ALA B 235 O LEU B 251 SHEET 8 AA4 9 PRO B 206 GLY B 214 -1 N TYR B 210 O VAL B 238 SHEET 9 AA4 9 VAL B 369 GLU B 370 -1 O VAL B 369 N ILE B 209 CISPEP 1 LYS A 107 PRO A 108 0 -29.57 CISPEP 2 SER A 300 PRO A 301 0 -6.34 CISPEP 3 SER B 300 PRO B 301 0 -7.82 CRYST1 56.863 72.817 197.307 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005068 0.00000