HEADER HYDROLASE 31-AUG-23 8QEF TITLE A CARBOHYDRATE ESTERASE FAMILY 15 (CE15) GLUCURONOYL ESTERASE FROM TITLE 2 PHOCAEICOLA ATCC 8482 BOUND TO NOVEL LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACETYL XYLAN ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOCAEICOLA VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 GENE: BVU_0175; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28-A KEYWDS ESTERASE, CE15, GLUCURONOYL ESTERASE, BACTEROIDOTA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BANERJEE,J.N.POULSEN,S.MAZURKEWICH,A.SEVESO,J.LARSBRINK,L.LO LEGGIO REVDAT 2 28-FEB-24 8QEF 1 JRNL REVDAT 1 13-DEC-23 8QEF 0 JRNL AUTH A.SEVESO,S.MAZURKEWICH,S.BANERJEE,J.-.C.N.POULSEN, JRNL AUTH 2 L.LO LEGGIO,J.LARSBRINK JRNL TITL POLYSACCHARIDE UTILIZATION LOCI FROM BACTEROIDOTA ENCODE JRNL TITL 2 CE15 ENZYMES WITH POSSIBLE ROLES IN CLEAVING PECTIN-LIGNIN JRNL TITL 3 BONDS. JRNL REF APPL.ENVIRON.MICROBIOL. V. 90 76823 2024 JRNL REFN ESSN 1098-5336 JRNL PMID 38179933 JRNL DOI 10.1128/AEM.01768-23 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 70.6 REMARK 3 NUMBER OF REFLECTIONS : 26881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.0610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.993 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.007 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6503 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5747 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8840 ; 1.483 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13401 ; 1.246 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 794 ; 7.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 353 ;33.735 ;22.918 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1028 ;17.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 795 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7364 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1412 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3140 ; 2.333 ; 3.372 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3139 ; 2.333 ; 3.372 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3928 ; 3.615 ; 5.052 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3929 ; 3.615 ; 5.052 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3363 ; 2.741 ; 3.660 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3364 ; 2.741 ; 3.660 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4907 ; 4.417 ; 5.358 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7448 ; 6.210 ;38.763 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7445 ; 6.210 ;38.770 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5811 ; 0.46 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5811 ; 7.40 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292133094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 85.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 20 MM NACL, AND 20 REMARK 280 -24% (W/V) PEG 6000, SOAKED IN 0.25 M NEUTRALISED GALACTURONIC REMARK 280 ACID., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.58150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 TYR A 17 REMARK 465 PHE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 HIS A 21 REMARK 465 SER A 22 REMARK 465 LYS A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 161 REMARK 465 GLU A 162 REMARK 465 ILE A 163 REMARK 465 THR A 164 REMARK 465 ASP A 165 REMARK 465 GLU A 166 REMARK 465 LYS A 167 REMARK 465 MET A 168 REMARK 465 LYS A 169 REMARK 465 LYS A 170 REMARK 465 ARG A 171 REMARK 465 LYS A 427 REMARK 465 MET B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 LEU B 16 REMARK 465 TYR B 17 REMARK 465 PHE B 18 REMARK 465 GLN B 19 REMARK 465 GLY B 20 REMARK 465 HIS B 21 REMARK 465 SER B 22 REMARK 465 LYS B 23 REMARK 465 SER B 24 REMARK 465 PRO B 25 REMARK 465 ARG B 26 REMARK 465 PRO B 161 REMARK 465 GLU B 162 REMARK 465 ILE B 163 REMARK 465 THR B 164 REMARK 465 ASP B 165 REMARK 465 GLU B 166 REMARK 465 LYS B 167 REMARK 465 MET B 168 REMARK 465 LYS B 169 REMARK 465 LYS B 170 REMARK 465 ARG B 171 REMARK 465 ASN B 426 REMARK 465 LYS B 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ASN B 223 CG OD1 ND2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 LYS B 327 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 79 -63.32 -128.06 REMARK 500 ASP A 154 76.48 -63.56 REMARK 500 PRO A 156 0.22 -68.82 REMARK 500 ASP A 208 28.59 49.92 REMARK 500 SER A 264 -120.38 59.48 REMARK 500 SER A 264 -118.78 56.87 REMARK 500 ASP A 353 58.53 -99.67 REMARK 500 ASP A 357 82.58 66.03 REMARK 500 ASP A 357 82.58 66.06 REMARK 500 HIS A 406 100.25 -43.94 REMARK 500 LYS B 66 -60.40 -133.63 REMARK 500 MET B 79 -65.74 -120.78 REMARK 500 LYS B 89 171.43 -57.77 REMARK 500 ARG B 96 125.03 164.29 REMARK 500 ASP B 178 -47.94 -27.18 REMARK 500 LYS B 257 48.83 -147.06 REMARK 500 SER B 264 -124.23 67.02 REMARK 500 ARG B 325 38.35 -142.77 REMARK 500 LYS B 327 -37.60 -39.70 REMARK 500 ASP B 357 79.57 60.88 REMARK 500 TYR B 375 31.79 -98.20 REMARK 500 MET B 393 28.39 -150.92 REMARK 500 ALA B 407 169.27 174.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 136 LYS A 137 149.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QCL RELATED DB: PDB REMARK 900 RELATED ID: 8Q6S RELATED DB: PDB DBREF 8QEF A 30 427 UNP A6KWT9 A6KWT9_PHOV8 30 427 DBREF 8QEF B 30 427 UNP A6KWT9 A6KWT9_PHOV8 30 427 SEQADV 8QEF MET A 2 UNP A6KWT9 INITIATING METHIONINE SEQADV 8QEF GLY A 3 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER A 4 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER A 5 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 6 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 7 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 8 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 9 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 10 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 11 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER A 12 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER A 13 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF GLU A 14 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF ASN A 15 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF LEU A 16 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF TYR A 17 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF PHE A 18 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF GLN A 19 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF GLY A 20 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS A 21 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER A 22 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF LYS A 23 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER A 24 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF PRO A 25 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF ARG A 26 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF LYS A 27 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF ASP A 28 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF TYR A 29 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF MET B 2 UNP A6KWT9 INITIATING METHIONINE SEQADV 8QEF GLY B 3 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER B 4 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER B 5 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 6 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 7 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 8 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 9 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 10 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 11 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER B 12 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER B 13 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF GLU B 14 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF ASN B 15 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF LEU B 16 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF TYR B 17 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF PHE B 18 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF GLN B 19 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF GLY B 20 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF HIS B 21 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER B 22 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF LYS B 23 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF SER B 24 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF PRO B 25 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF ARG B 26 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF LYS B 27 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF ASP B 28 UNP A6KWT9 EXPRESSION TAG SEQADV 8QEF TYR B 29 UNP A6KWT9 EXPRESSION TAG SEQRES 1 A 426 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 426 ASN LEU TYR PHE GLN GLY HIS SER LYS SER PRO ARG LYS SEQRES 3 A 426 ASP TYR ALA LYS LEU ALA ASN TYR ASP GLU SER LYS VAL SEQRES 4 A 426 PRO GLN TYR THR LEU PRO SER VAL LEU MET CYS HIS ASP SEQRES 5 A 426 GLY GLU MET VAL GLN THR LYS GLU GLN TRP GLU GLN LYS SEQRES 6 A 426 ARG ARG PRO GLU ILE LEU ASN LEU PHE THR THR TYR MET SEQRES 7 A 426 PHE GLY LYS ALA PRO VAL LEU LYS HIS LYS LEU PRO CYS SEQRES 8 A 426 THR VAL SER ARG ILE ASN GLU LYS ALA LEU ASN GLY ARG SEQRES 9 A 426 ALA THR ARG LYS GLU ILE THR ILE GLN LEU THR ASP ASP SEQRES 10 A 426 PRO GLN GLY PRO HIS ILE ASP LEU GLN LEU TYR LEU PRO SEQRES 11 A 426 ASN HIS VAL SER GLY LYS ILE PRO VAL PHE LEU GLY ILE SEQRES 12 A 426 SER PHE MET PRO ASN TYR THR ILE TYR ASP ASP PRO ASP SEQRES 13 A 426 LEU SER VAL PRO GLU ILE THR ASP GLU LYS MET LYS LYS SEQRES 14 A 426 ARG SER PHE ARG GLY SER MET ASP LYS SER TRP GLN LEU SEQRES 15 A 426 ASP LYS ILE LEU GLU HIS GLY TYR GLY LEU ALA THR PHE SEQRES 16 A 426 CYS TYR ASN ASP VAL ASP PRO ASP PHE ASP ASP ASP PHE SEQRES 17 A 426 GLN ASN GLY VAL HIS PRO TYR TYR TYR GLU LYS GLY GLN SEQRES 18 A 426 ASN PHE PRO ASP PRO ASP GLN TRP GLY SER ILE ALA ALA SEQRES 19 A 426 TRP ALA TRP GLY MET SER ARG ALA MET ASP TYR LEU GLU SEQRES 20 A 426 THR ASP LYS LYS VAL ASP ALA LYS LYS VAL ALA VAL ILE SEQRES 21 A 426 GLY HIS SER ARG LEU GLY LYS THR ALA VAL TRP ALA GLY SEQRES 22 A 426 ALA SER ASP PRO ARG PHE ALA LEU VAL ILE SER GLY ASN SEQRES 23 A 426 SER GLY CYS CYS GLY VAL ALA ILE SER ARG ARG CYS PHE SEQRES 24 A 426 GLY GLU THR VAL GLU ALA MET ASN VAL ARG PHE PRO HIS SEQRES 25 A 426 TRP PHE CYS GLY ASN TYR LYS GLN PHE ASN ASP ARG GLU SEQRES 26 A 426 LYS TYR LEU PRO PHE ASP GLN HIS GLU LEU VAL ALA LEU SEQRES 27 A 426 ILE ALA PRO ARG PRO ILE TYR ILE ALA SER ALA GLU GLU SEQRES 28 A 426 ASP ASN TRP SER ASP GLN LYS GLY GLU PHE LEU GLY GLY SEQRES 29 A 426 LYS GLY ALA GLU PRO VAL TYR ALA LEU TYR GLY LEU GLY SEQRES 30 A 426 GLY ILE GLY CYS GLU GLU MET PRO PRO VAL ASP THR PRO SEQRES 31 A 426 TYR MET ASN GLY PRO ILE ALA TYR HIS ASN ARG LYS GLY SEQRES 32 A 426 PRO HIS ALA VAL LEU PRO TYR ASP TRP GLU GLN PHE LEU SEQRES 33 A 426 ARG PHE ALA ASP LYS TYR PHE LYS ASN LYS SEQRES 1 B 426 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 B 426 ASN LEU TYR PHE GLN GLY HIS SER LYS SER PRO ARG LYS SEQRES 3 B 426 ASP TYR ALA LYS LEU ALA ASN TYR ASP GLU SER LYS VAL SEQRES 4 B 426 PRO GLN TYR THR LEU PRO SER VAL LEU MET CYS HIS ASP SEQRES 5 B 426 GLY GLU MET VAL GLN THR LYS GLU GLN TRP GLU GLN LYS SEQRES 6 B 426 ARG ARG PRO GLU ILE LEU ASN LEU PHE THR THR TYR MET SEQRES 7 B 426 PHE GLY LYS ALA PRO VAL LEU LYS HIS LYS LEU PRO CYS SEQRES 8 B 426 THR VAL SER ARG ILE ASN GLU LYS ALA LEU ASN GLY ARG SEQRES 9 B 426 ALA THR ARG LYS GLU ILE THR ILE GLN LEU THR ASP ASP SEQRES 10 B 426 PRO GLN GLY PRO HIS ILE ASP LEU GLN LEU TYR LEU PRO SEQRES 11 B 426 ASN HIS VAL SER GLY LYS ILE PRO VAL PHE LEU GLY ILE SEQRES 12 B 426 SER PHE MET PRO ASN TYR THR ILE TYR ASP ASP PRO ASP SEQRES 13 B 426 LEU SER VAL PRO GLU ILE THR ASP GLU LYS MET LYS LYS SEQRES 14 B 426 ARG SER PHE ARG GLY SER MET ASP LYS SER TRP GLN LEU SEQRES 15 B 426 ASP LYS ILE LEU GLU HIS GLY TYR GLY LEU ALA THR PHE SEQRES 16 B 426 CYS TYR ASN ASP VAL ASP PRO ASP PHE ASP ASP ASP PHE SEQRES 17 B 426 GLN ASN GLY VAL HIS PRO TYR TYR TYR GLU LYS GLY GLN SEQRES 18 B 426 ASN PHE PRO ASP PRO ASP GLN TRP GLY SER ILE ALA ALA SEQRES 19 B 426 TRP ALA TRP GLY MET SER ARG ALA MET ASP TYR LEU GLU SEQRES 20 B 426 THR ASP LYS LYS VAL ASP ALA LYS LYS VAL ALA VAL ILE SEQRES 21 B 426 GLY HIS SER ARG LEU GLY LYS THR ALA VAL TRP ALA GLY SEQRES 22 B 426 ALA SER ASP PRO ARG PHE ALA LEU VAL ILE SER GLY ASN SEQRES 23 B 426 SER GLY CYS CYS GLY VAL ALA ILE SER ARG ARG CYS PHE SEQRES 24 B 426 GLY GLU THR VAL GLU ALA MET ASN VAL ARG PHE PRO HIS SEQRES 25 B 426 TRP PHE CYS GLY ASN TYR LYS GLN PHE ASN ASP ARG GLU SEQRES 26 B 426 LYS TYR LEU PRO PHE ASP GLN HIS GLU LEU VAL ALA LEU SEQRES 27 B 426 ILE ALA PRO ARG PRO ILE TYR ILE ALA SER ALA GLU GLU SEQRES 28 B 426 ASP ASN TRP SER ASP GLN LYS GLY GLU PHE LEU GLY GLY SEQRES 29 B 426 LYS GLY ALA GLU PRO VAL TYR ALA LEU TYR GLY LEU GLY SEQRES 30 B 426 GLY ILE GLY CYS GLU GLU MET PRO PRO VAL ASP THR PRO SEQRES 31 B 426 TYR MET ASN GLY PRO ILE ALA TYR HIS ASN ARG LYS GLY SEQRES 32 B 426 PRO HIS ALA VAL LEU PRO TYR ASP TRP GLU GLN PHE LEU SEQRES 33 B 426 ARG PHE ALA ASP LYS TYR PHE LYS ASN LYS HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET GTR B 501 13 HET EDO B 502 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GTR BETA-D-GALACTOPYRANURONIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN GTR BETA-D-GALACTURONIC ACID; D-GALACTURONIC ACID; HETSYN 2 GTR GALACTURONIC ACID FORMUL 3 EDO 4(C2 H6 O2) FORMUL 6 GTR C6 H10 O7 FORMUL 8 HOH *95(H2 O) HELIX 1 AA1 ASP A 28 ALA A 33 1 6 HELIX 2 AA2 ASP A 36 VAL A 40 5 5 HELIX 3 AA3 THR A 59 LYS A 66 1 8 HELIX 4 AA4 LYS A 66 MET A 79 1 14 HELIX 5 AA5 PRO A 148 ILE A 152 5 5 HELIX 6 AA6 MET A 177 TRP A 181 5 5 HELIX 7 AA7 GLN A 182 HIS A 189 1 8 HELIX 8 AA8 ASN A 199 VAL A 201 5 3 HELIX 9 AA9 VAL A 213 TYR A 218 1 6 HELIX 10 AB1 GLY A 231 GLU A 248 1 18 HELIX 11 AB2 SER A 264 ASP A 277 1 14 HELIX 12 AB3 ILE A 295 CYS A 299 5 5 HELIX 13 AB4 THR A 303 PHE A 311 1 9 HELIX 14 AB5 GLY A 317 ASN A 323 5 7 HELIX 15 AB6 ARG A 325 LEU A 329 5 5 HELIX 16 AB7 GLN A 333 LEU A 339 1 7 HELIX 17 AB8 ASP A 353 SER A 356 5 4 HELIX 18 AB9 ASP A 357 LEU A 374 1 18 HELIX 19 AC1 LEU A 409 LYS A 425 1 17 HELIX 20 AC2 TYR B 29 ALA B 33 5 5 HELIX 21 AC3 ASP B 36 VAL B 40 5 5 HELIX 22 AC4 THR B 59 LYS B 66 1 8 HELIX 23 AC5 LYS B 66 MET B 79 1 14 HELIX 24 AC6 PRO B 148 ILE B 152 5 5 HELIX 25 AC7 MET B 177 GLN B 182 1 6 HELIX 26 AC8 GLN B 182 HIS B 189 1 8 HELIX 27 AC9 ASN B 199 VAL B 201 5 3 HELIX 28 AD1 VAL B 213 TYR B 218 5 6 HELIX 29 AD2 GLY B 231 ASP B 250 1 20 HELIX 30 AD3 SER B 264 ASP B 277 1 14 HELIX 31 AD4 ILE B 295 CYS B 299 5 5 HELIX 32 AD5 THR B 303 PHE B 311 1 9 HELIX 33 AD6 GLY B 317 ASN B 323 5 7 HELIX 34 AD7 ARG B 325 LEU B 329 5 5 HELIX 35 AD8 ASP B 332 LEU B 339 1 8 HELIX 36 AD9 ASP B 353 SER B 356 5 4 HELIX 37 AE1 ASP B 357 GLY B 367 1 11 HELIX 38 AE2 ALA B 368 ALA B 373 1 6 HELIX 39 AE3 LEU B 374 GLY B 376 5 3 HELIX 40 AE4 LEU B 409 LYS B 425 1 17 SHEET 1 AA1 9 CYS A 92 ASN A 98 0 SHEET 2 AA1 9 ALA A 106 GLN A 114 -1 O ARG A 108 N ASN A 98 SHEET 3 AA1 9 HIS A 123 PRO A 131 -1 O LEU A 126 N ILE A 111 SHEET 4 AA1 9 GLY A 192 CYS A 197 -1 O THR A 195 N GLN A 127 SHEET 5 AA1 9 ILE A 138 SER A 145 1 N PHE A 141 O ALA A 194 SHEET 6 AA1 9 VAL A 253 HIS A 263 1 O ALA A 259 N LEU A 142 SHEET 7 AA1 9 LEU A 282 GLY A 286 1 O ILE A 284 N VAL A 260 SHEET 8 AA1 9 ILE A 345 ALA A 350 1 O ALA A 348 N SER A 285 SHEET 9 AA1 9 ILE A 397 ARG A 402 1 O HIS A 400 N SER A 349 SHEET 1 AA2 9 CYS B 92 ASN B 98 0 SHEET 2 AA2 9 ALA B 106 GLN B 114 -1 O THR B 112 N THR B 93 SHEET 3 AA2 9 HIS B 123 PRO B 131 -1 O LEU B 128 N LYS B 109 SHEET 4 AA2 9 GLY B 192 CYS B 197 -1 O THR B 195 N GLN B 127 SHEET 5 AA2 9 ILE B 138 SER B 145 1 N GLY B 143 O ALA B 194 SHEET 6 AA2 9 VAL B 253 HIS B 263 1 O ALA B 259 N LEU B 142 SHEET 7 AA2 9 LEU B 282 GLY B 286 1 O ILE B 284 N VAL B 260 SHEET 8 AA2 9 ILE B 345 ALA B 350 1 O TYR B 346 N SER B 285 SHEET 9 AA2 9 ILE B 397 ARG B 402 1 O HIS B 400 N SER B 349 CISPEP 1 ALA A 341 PRO A 342 0 2.34 CISPEP 2 ALA B 341 PRO B 342 0 3.94 CRYST1 74.215 59.163 87.163 90.00 101.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013474 0.000000 0.002727 0.00000 SCALE2 0.000000 0.016902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011705 0.00000