HEADER SIGNALING PROTEIN 31-AUG-23 8QEH
TITLE CRYSTAL STRUCTURE OF THE G11 PROTEIN HETEROTRIMER BOUND TO FR900359
TITLE 2 INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA-11;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: G ALPHA-11,G-PROTEIN SUBUNIT ALPHA-11,GUANINE NUCLEOTIDE-
COMPND 5 BINDING PROTEIN G(Y) SUBUNIT ALPHA;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT
COMPND 9 BETA-1;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES;
COMPND 12 MOL_ID: 3;
COMPND 13 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT
COMPND 14 GAMMA-2;
COMPND 15 CHAIN: G;
COMPND 16 SYNONYM: G GAMMA-I;
COMPND 17 ENGINEERED: YES;
COMPND 18 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: GNA11, GA11;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 10 ORGANISM_COMMON: HUMAN;
SOURCE 11 ORGANISM_TAXID: 9606;
SOURCE 12 GENE: GNB1;
SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 15 MOL_ID: 3;
SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 17 ORGANISM_COMMON: HUMAN;
SOURCE 18 ORGANISM_TAXID: 9606;
SOURCE 19 GENE: GNG2;
SOURCE 20 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7111
KEYWDS G PROTEIN, FR900359, CELL SIGNALING, GNA11, GNB1, GNG2, G ALPHA 11,
KEYWDS 2 SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.MUEHLE,M.J.RODRIGUES,R.GUIXA-GONZALEZ,X.DEUPI,G.F.X.SCHERTLER
REVDAT 1 19-MAR-25 8QEH 0
JRNL AUTH J.MUEHLE,G.F.X.SCHERTLER
JRNL TITL STRUCTURE OF THE HETEROTRIMERIC G11 PROTEIN BOUND TO THE
JRNL TITL 2 CYCLIC DEPSIPEPTIDES FR900359 AND YM-254890
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.43 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0352
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.11
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 163375
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : NULL
REMARK 3 R VALUE (WORKING SET) : 0.140
REMARK 3 FREE R VALUE : 0.180
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.873
REMARK 3 FREE R VALUE TEST SET COUNT : 7962
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47
REMARK 3 REFLECTION IN BIN (WORKING SET) : 11364
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92
REMARK 3 BIN R VALUE (WORKING SET) : 0.3300
REMARK 3 BIN FREE R VALUE SET COUNT : 577
REMARK 3 BIN FREE R VALUE : 0.3380
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5727
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 141
REMARK 3 SOLVENT ATOMS : 760
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.51100
REMARK 3 B22 (A**2) : -3.41900
REMARK 3 B33 (A**2) : 0.90800
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.056
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.456
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6336 ; 0.007 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 5732 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8610 ; 1.422 ; 1.648
REMARK 3 BOND ANGLES OTHERS (DEGREES): 13337 ; 0.518 ; 1.567
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 813 ; 6.422 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;12.090 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1065 ;13.088 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 970 ; 0.071 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7420 ; 0.007 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1310 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1162 ; 0.301 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 61 ; 0.194 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3105 ; 0.173 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 566 ; 0.160 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.147 ; 0.200
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.071 ; 0.200
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3162 ; 2.608 ; 2.440
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3163 ; 2.609 ; 2.511
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4005 ; 3.418 ; 3.658
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4005 ; 3.418 ; 3.695
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3174 ; 3.417 ; 2.819
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3175 ; 3.416 ; 2.818
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4605 ; 4.318 ; 4.082
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4606 ; 4.317 ; 4.082
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 12063 ; 3.488 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK BULK SOLVENT
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.30
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK 3 RIDING POSITIONS
REMARK 4
REMARK 4 8QEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-23.
REMARK 100 THE DEPOSITION ID IS D_1292128788.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-JAN-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163494
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430
REMARK 200 RESOLUTION RANGE LOW (A) : 126.800
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 44.00
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 46.70
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.16
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M NA ACETATE PH 4.5, 2.7 % PEG
REMARK 280 SMEARS MEDIUM, 6.3 % MPD, 0.5% N-OCTYL-BETA-D-GLUCOSIDE AND 10
REMARK 280 MM ZINC SULFATE HEPTAHYDRATE, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.32200
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.40050
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.90650
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.40050
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.32200
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.90650
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 8
REMARK 465 CYS A 9
REMARK 465 THR A 10
REMARK 465 LEU A 11
REMARK 465 ASN A 317
REMARK 465 PRO A 318
REMARK 465 ASP A 319
REMARK 465 SER A 320
REMARK 465 LEU A 353
REMARK 465 LYS A 354
REMARK 465 GLU A 355
REMARK 465 TYR A 356
REMARK 465 ASN A 357
REMARK 465 LEU A 358
REMARK 465 VAL A 359
REMARK 465 PRO B -3
REMARK 465 GLY B -2
REMARK 465 SER B -1
REMARK 465 SER B 0
REMARK 465 GLY B 1
REMARK 465 ARG B 129
REMARK 465 GLU B 130
REMARK 465 GLY B 131
REMARK 465 ASN B 132
REMARK 465 MET G 2
REMARK 465 ALA G 3
REMARK 465 SER G 4
REMARK 465 ASN G 5
REMARK 465 ASN G 6
REMARK 465 THR G 7
REMARK 465 PHE G 68
REMARK 465 SER G 69
REMARK 465 ALA G 70
REMARK 465 ILE G 71
REMARK 465 LEU G 72
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 14 CG CD OE1 OE2
REMARK 470 LYS A 16 CD CE NZ
REMARK 470 GLU A 70 CD OE1 OE2
REMARK 470 GLU A 119 CD OE1 OE2
REMARK 470 LEU A 170 CD1 CD2
REMARK 470 VAL A 240 CG1 CG2
REMARK 470 GLU A 241 CG CD OE1 OE2
REMARK 470 ASP A 243 CB CG OD1 OD2
REMARK 470 ASN A 244 CG OD1 ND2
REMARK 470 GLU A 250 CD OE1 OE2
REMARK 470 LYS A 311 CD CE NZ
REMARK 470 ASP A 321 CG OD1 OD2
REMARK 470 GLU B 3 CG CD OE1 OE2
REMARK 470 LEU B 4 CG CD1 CD2
REMARK 470 ASP B 5 CG OD1 OD2
REMARK 470 GLN B 6 CG CD OE1 NE2
REMARK 470 ARG B 8 CD NE CZ NH1 NH2
REMARK 470 GLN B 9 CG CD OE1 NE2
REMARK 470 GLU B 12 CG CD OE1 OE2
REMARK 470 GLN B 13 CG CD OE1 NE2
REMARK 470 THR B 128 OG1 CG2
REMARK 470 ARG B 134 CD NE CZ NH1 NH2
REMARK 470 ILE G 10 CD1
REMARK 470 GLN G 12 CG CD OE1 NE2
REMARK 470 LYS G 15 CD CE NZ
REMARK 470 LYS G 47 CD CE NZ
REMARK 470 LYS G 65 CG CD CE NZ
REMARK 470 LYS G 66 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH B 583 O HOH B 714 2.18
REMARK 500 O HOH B 840 O HOH B 849 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG B 68 -53.59 -137.93
REMARK 500 THR B 164 4.38 81.01
REMARK 500 THR B 196 16.72 55.19
REMARK 500 PHE B 292 3.88 93.51
REMARK 500 ALA B 302 -1.19 80.64
REMARK 500 SER B 334 0.16 88.42
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 214 0.08 SIDE CHAIN
REMARK 500 ARG B 22 0.09 SIDE CHAIN
REMARK 500 ARG B 46 0.07 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 860 DISTANCE = 5.82 ANGSTROMS
REMARK 525 HOH B 861 DISTANCE = 5.84 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 406 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 327 NE2
REMARK 620 2 HOH A 769 O 105.0
REMARK 620 3 GLU B 226 OE2 91.1 152.7
REMARK 620 N 1 2
DBREF 8QEH A 36 359 UNP P29992 GNA11_HUMAN 36 359
DBREF 8QEH B 2 340 UNP P62873 GBB1_HUMAN 2 340
DBREF 8QEH G 2 72 UNP P59768 GBG2_HUMAN 1 71
SEQADV 8QEH GLY A 8 UNP P29992 EXPRESSION TAG
SEQADV 8QEH CYS A 9 UNP P29992 EXPRESSION TAG
SEQADV 8QEH THR A 10 UNP P29992 EXPRESSION TAG
SEQADV 8QEH LEU A 11 UNP P29992 EXPRESSION TAG
SEQADV 8QEH SER A 12 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ALA A 13 UNP P29992 EXPRESSION TAG
SEQADV 8QEH GLU A 14 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ASP A 15 UNP P29992 EXPRESSION TAG
SEQADV 8QEH LYS A 16 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ALA A 17 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ALA A 18 UNP P29992 EXPRESSION TAG
SEQADV 8QEH VAL A 19 UNP P29992 EXPRESSION TAG
SEQADV 8QEH GLU A 20 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ARG A 21 UNP P29992 EXPRESSION TAG
SEQADV 8QEH SER A 22 UNP P29992 EXPRESSION TAG
SEQADV 8QEH LYS A 23 UNP P29992 EXPRESSION TAG
SEQADV 8QEH MET A 24 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ILE A 25 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ASP A 26 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ARG A 27 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ASN A 28 UNP P29992 EXPRESSION TAG
SEQADV 8QEH LEU A 29 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ARG A 30 UNP P29992 EXPRESSION TAG
SEQADV 8QEH GLU A 31 UNP P29992 EXPRESSION TAG
SEQADV 8QEH ASP A 32 UNP P29992 EXPRESSION TAG
SEQADV 8QEH GLY A 33 UNP P29992 EXPRESSION TAG
SEQADV 8QEH GLU A 34 UNP P29992 EXPRESSION TAG
SEQADV 8QEH LYS A 35 UNP P29992 EXPRESSION TAG
SEQADV 8QEH PRO B -3 UNP P62873 EXPRESSION TAG
SEQADV 8QEH GLY B -2 UNP P62873 EXPRESSION TAG
SEQADV 8QEH SER B -1 UNP P62873 EXPRESSION TAG
SEQADV 8QEH SER B 0 UNP P62873 EXPRESSION TAG
SEQADV 8QEH GLY B 1 UNP P62873 EXPRESSION TAG
SEQADV 8QEH SER G 69 UNP P59768 CYS 68 ENGINEERED MUTATION
SEQRES 1 A 352 GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL GLU
SEQRES 2 A 352 ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP GLY
SEQRES 3 A 352 GLU LYS ALA ARG ARG GLU LEU LYS LEU LEU LEU LEU GLY
SEQRES 4 A 352 THR GLY GLU SER GLY LYS SER THR PHE ILE LYS GLN MET
SEQRES 5 A 352 ARG ILE ILE HIS GLY ALA GLY TYR SER GLU GLU ASP LYS
SEQRES 6 A 352 ARG GLY PHE THR LYS LEU VAL TYR GLN ASN ILE PHE THR
SEQRES 7 A 352 ALA MET GLN ALA MET ILE ARG ALA MET GLU THR LEU LYS
SEQRES 8 A 352 ILE LEU TYR LYS TYR GLU GLN ASN LYS ALA ASN ALA LEU
SEQRES 9 A 352 LEU ILE ARG GLU VAL ASP VAL GLU LYS VAL THR THR PHE
SEQRES 10 A 352 GLU HIS GLN TYR VAL SER ALA ILE LYS THR LEU TRP GLU
SEQRES 11 A 352 ASP PRO GLY ILE GLN GLU CYS TYR ASP ARG ARG ARG GLU
SEQRES 12 A 352 TYR GLN LEU SER ASP SER ALA LYS TYR TYR LEU THR ASP
SEQRES 13 A 352 VAL ASP ARG ILE ALA THR LEU GLY TYR LEU PRO THR GLN
SEQRES 14 A 352 GLN ASP VAL LEU ARG VAL ARG VAL PRO THR THR GLY ILE
SEQRES 15 A 352 ILE GLU TYR PRO PHE ASP LEU GLU ASN ILE ILE PHE ARG
SEQRES 16 A 352 MET VAL ASP VAL GLY GLY GLN ARG SER GLU ARG ARG LYS
SEQRES 17 A 352 TRP ILE HIS CYS PHE GLU ASN VAL THR SER ILE MET PHE
SEQRES 18 A 352 LEU VAL ALA LEU SER GLU TYR ASP GLN VAL LEU VAL GLU
SEQRES 19 A 352 SER ASP ASN GLU ASN ARG MET GLU GLU SER LYS ALA LEU
SEQRES 20 A 352 PHE ARG THR ILE ILE THR TYR PRO TRP PHE GLN ASN SER
SEQRES 21 A 352 SER VAL ILE LEU PHE LEU ASN LYS LYS ASP LEU LEU GLU
SEQRES 22 A 352 ASP LYS ILE LEU TYR SER HIS LEU VAL ASP TYR PHE PRO
SEQRES 23 A 352 GLU PHE ASP GLY PRO GLN ARG ASP ALA GLN ALA ALA ARG
SEQRES 24 A 352 GLU PHE ILE LEU LYS MET PHE VAL ASP LEU ASN PRO ASP
SEQRES 25 A 352 SER ASP LYS ILE ILE TYR SER HIS PHE THR CYS ALA THR
SEQRES 26 A 352 ASP THR GLU ASN ILE ARG PHE VAL PHE ALA ALA VAL LYS
SEQRES 27 A 352 ASP THR ILE LEU GLN LEU ASN LEU LYS GLU TYR ASN LEU
SEQRES 28 A 352 VAL
SEQRES 1 B 344 PRO GLY SER SER GLY SER GLU LEU ASP GLN LEU ARG GLN
SEQRES 2 B 344 GLU ALA GLU GLN LEU LYS ASN GLN ILE ARG ASP ALA ARG
SEQRES 3 B 344 LYS ALA CYS ALA ASP ALA THR LEU SER GLN ILE THR ASN
SEQRES 4 B 344 ASN ILE ASP PRO VAL GLY ARG ILE GLN MET ARG THR ARG
SEQRES 5 B 344 ARG THR LEU ARG GLY HIS LEU ALA LYS ILE TYR ALA MET
SEQRES 6 B 344 HIS TRP GLY THR ASP SER ARG LEU LEU VAL SER ALA SER
SEQRES 7 B 344 GLN ASP GLY LYS LEU ILE ILE TRP ASP SER TYR THR THR
SEQRES 8 B 344 ASN LYS VAL HIS ALA ILE PRO LEU ARG SER SER TRP VAL
SEQRES 9 B 344 MET THR CYS ALA TYR ALA PRO SER GLY ASN TYR VAL ALA
SEQRES 10 B 344 CYS GLY GLY LEU ASP ASN ILE CYS SER ILE TYR ASN LEU
SEQRES 11 B 344 LYS THR ARG GLU GLY ASN VAL ARG VAL SER ARG GLU LEU
SEQRES 12 B 344 ALA GLY HIS THR GLY TYR LEU SER CYS CYS ARG PHE LEU
SEQRES 13 B 344 ASP ASP ASN GLN ILE VAL THR SER SER GLY ASP THR THR
SEQRES 14 B 344 CYS ALA LEU TRP ASP ILE GLU THR GLY GLN GLN THR THR
SEQRES 15 B 344 THR PHE THR GLY HIS THR GLY ASP VAL MET SER LEU SER
SEQRES 16 B 344 LEU ALA PRO ASP THR ARG LEU PHE VAL SER GLY ALA CYS
SEQRES 17 B 344 ASP ALA SER ALA LYS LEU TRP ASP VAL ARG GLU GLY MET
SEQRES 18 B 344 CYS ARG GLN THR PHE THR GLY HIS GLU SER ASP ILE ASN
SEQRES 19 B 344 ALA ILE CYS PHE PHE PRO ASN GLY ASN ALA PHE ALA THR
SEQRES 20 B 344 GLY SER ASP ASP ALA THR CYS ARG LEU PHE ASP LEU ARG
SEQRES 21 B 344 ALA ASP GLN GLU LEU MET THR TYR SER HIS ASP ASN ILE
SEQRES 22 B 344 ILE CYS GLY ILE THR SER VAL SER PHE SER LYS SER GLY
SEQRES 23 B 344 ARG LEU LEU LEU ALA GLY TYR ASP ASP PHE ASN CYS ASN
SEQRES 24 B 344 VAL TRP ASP ALA LEU LYS ALA ASP ARG ALA GLY VAL LEU
SEQRES 25 B 344 ALA GLY HIS ASP ASN ARG VAL SER CYS LEU GLY VAL THR
SEQRES 26 B 344 ASP ASP GLY MET ALA VAL ALA THR GLY SER TRP ASP SER
SEQRES 27 B 344 PHE LEU LYS ILE TRP ASN
SEQRES 1 G 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG
SEQRES 2 G 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP
SEQRES 3 G 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA
SEQRES 4 G 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR
SEQRES 5 G 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS
SEQRES 6 G 71 PHE PHE SER ALA ILE LEU
HET EDO A 401 4
HET EDO A 402 4
HET EDO A 403 4
HET EDO A 404 4
HET GDP A 405 28
HET ZN A 406 1
HET CL A 407 1
HET DAM A 408 6
HET HF2 A 409 11
HET UDL A 410 12
HET OTH A 411 9
HET HL2 A 412 9
HET HL2 A 413 9
HET EDO B 401 4
HET EDO B 402 4
HET EDO B 403 4
HET MAA B 404 6
HET ALA B 405 5
HET PPI B 406 4
HET DMS G 101 4
HET DMS G 102 4
HET DMS G 103 4
HETNAM EDO 1,2-ETHANEDIOL
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
HETNAM ZN ZINC ION
HETNAM CL CHLORIDE ION
HETNAM DAM N-METHYL-ALPHA-BETA-DEHYDROALANINE
HETNAM HF2 (2R)-2-HYDROXY-3-PHENYLPROPANOIC ACID
HETNAM UDL (2~{S},3~{R})-2-ACETAMIDO-4-METHYL-3-OXIDANYL-PENTANOIC
HETNAM 2 UDL ACID
HETNAM OTH N,O-DIMETHYL-L-THREONINE
HETNAM HL2 (2S,3R)-2-AMINO-3-HYDROXY-4-METHYLPENTANOIC ACID
HETNAM MAA N-METHYL-L-ALANINE
HETNAM ALA ALANINE
HETNAM PPI PROPANOIC ACID
HETNAM DMS DIMETHYL SULFOXIDE
HETSYN EDO ETHYLENE GLYCOL
HETSYN HL2 BETA-HYDROXYLEUCINE
FORMUL 4 EDO 7(C2 H6 O2)
FORMUL 8 GDP C10 H15 N5 O11 P2
FORMUL 9 ZN ZN 2+
FORMUL 10 CL CL 1-
FORMUL 11 DAM C4 H7 N O2
FORMUL 12 HF2 C9 H10 O3
FORMUL 13 UDL C8 H15 N O4
FORMUL 14 OTH C6 H13 N O3
FORMUL 15 HL2 2(C6 H13 N O3)
FORMUL 20 MAA C4 H9 N O2
FORMUL 21 ALA C3 H7 N O2
FORMUL 22 PPI C3 H6 O2
FORMUL 23 DMS 3(C2 H6 O S)
FORMUL 26 HOH *760(H2 O)
HELIX 1 AA1 SER A 12 ARG A 37 1 26
HELIX 2 AA2 GLY A 51 GLY A 64 1 14
HELIX 3 AA3 SER A 68 PHE A 75 1 8
HELIX 4 AA4 PHE A 75 LEU A 97 1 23
HELIX 5 AA5 GLN A 105 GLU A 115 1 11
HELIX 6 AA6 ASP A 117 VAL A 121 5 5
HELIX 7 AA7 GLU A 125 GLU A 137 1 13
HELIX 8 AA8 ASP A 138 ARG A 147 1 10
HELIX 9 AA9 ARG A 148 TYR A 151 5 4
HELIX 10 AB1 SER A 156 ASP A 163 1 8
HELIX 11 AB2 ASP A 163 THR A 169 1 7
HELIX 12 AB3 THR A 175 VAL A 182 1 8
HELIX 13 AB4 GLU A 212 GLU A 221 5 10
HELIX 14 AB5 SER A 233 TYR A 235 5 3
HELIX 15 AB6 ARG A 247 THR A 260 1 14
HELIX 16 AB7 TYR A 261 GLN A 265 5 5
HELIX 17 AB8 LYS A 275 ILE A 283 1 9
HELIX 18 AB9 HIS A 287 TYR A 291 5 5
HELIX 19 AC1 ASP A 301 VAL A 314 1 14
HELIX 20 AC2 ASP A 333 ASN A 352 1 20
HELIX 21 AC3 GLU B 3 CYS B 25 1 23
HELIX 22 AC4 THR B 29 THR B 34 1 6
HELIX 23 AC5 SER G 9 ASN G 25 1 17
HELIX 24 AC6 LYS G 30 ALA G 46 1 17
HELIX 25 AC7 LYS G 47 ASP G 49 5 3
HELIX 26 AC8 PRO G 56 ASN G 60 5 5
SHEET 1 AA1 6 ILE A 190 LEU A 196 0
SHEET 2 AA1 6 ILE A 199 ASP A 205 -1 O PHE A 201 N PHE A 194
SHEET 3 AA1 6 GLU A 39 LEU A 45 1 N LEU A 44 O VAL A 204
SHEET 4 AA1 6 SER A 225 ALA A 231 1 O LEU A 229 N LEU A 45
SHEET 5 AA1 6 SER A 268 ASN A 274 1 O PHE A 272 N PHE A 228
SHEET 6 AA1 6 ILE A 324 PHE A 328 1 O TYR A 325 N LEU A 271
SHEET 1 AA2 2 VAL A 238 LEU A 239 0
SHEET 2 AA2 2 GLU A 245 ASN A 246 -1 O GLU A 245 N LEU A 239
SHEET 1 AA3 4 THR B 47 LEU B 51 0
SHEET 2 AA3 4 LEU B 336 TRP B 339 -1 O ILE B 338 N ARG B 48
SHEET 3 AA3 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339
SHEET 4 AA3 4 VAL B 315 VAL B 320 -1 N GLY B 319 O ALA B 328
SHEET 1 AA4 4 ILE B 58 TRP B 63 0
SHEET 2 AA4 4 LEU B 69 SER B 74 -1 O VAL B 71 N HIS B 62
SHEET 3 AA4 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70
SHEET 4 AA4 4 LYS B 89 PRO B 94 -1 O ILE B 93 N LEU B 79
SHEET 1 AA5 4 VAL B 100 TYR B 105 0
SHEET 2 AA5 4 TYR B 111 GLY B 116 -1 O GLY B 115 N MET B 101
SHEET 3 AA5 4 ILE B 120 ASN B 125 -1 O TYR B 124 N VAL B 112
SHEET 4 AA5 4 ARG B 134 ALA B 140 -1 O SER B 136 N ILE B 123
SHEET 1 AA6 4 LEU B 146 ASP B 153 0
SHEET 2 AA6 4 GLN B 156 SER B 161 -1 O VAL B 158 N ARG B 150
SHEET 3 AA6 4 CYS B 166 ASP B 170 -1 O TRP B 169 N ILE B 157
SHEET 4 AA6 4 GLN B 175 PHE B 180 -1 O PHE B 180 N CYS B 166
SHEET 1 AA7 4 VAL B 187 LEU B 192 0
SHEET 2 AA7 4 LEU B 198 ALA B 203 -1 O GLY B 202 N MET B 188
SHEET 3 AA7 4 SER B 207 ASP B 212 -1 O TRP B 211 N PHE B 199
SHEET 4 AA7 4 CYS B 218 THR B 223 -1 O ARG B 219 N LEU B 210
SHEET 1 AA8 4 ILE B 229 PHE B 234 0
SHEET 2 AA8 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233
SHEET 3 AA8 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241
SHEET 4 AA8 4 GLN B 259 TYR B 264 -1 O LEU B 261 N LEU B 252
SHEET 1 AA9 4 ILE B 273 PHE B 278 0
SHEET 2 AA9 4 LEU B 284 TYR B 289 -1 O LEU B 286 N SER B 277
SHEET 3 AA9 4 ASN B 293 ASP B 298 -1 O TRP B 297 N LEU B 285
SHEET 4 AA9 4 ARG B 304 ALA B 309 -1 O GLY B 306 N VAL B 296
LINK N DAM A 408 C HF2 A 409 1555 1555 1.55
LINK C DAM A 408 N ALA B 405 1555 1555 1.48
LINK OA HF2 A 409 C5 UDL A 410 1555 1555 1.41
LINK O UDL A 410 C OTH A 411 1555 1555 1.28
LINK N OTH A 411 C HL2 A 412 1555 1555 1.42
LINK OH HL2 A 412 C HL2 A 413 1555 1555 1.31
LINK N HL2 A 412 C MAA B 404 1555 1555 1.52
LINK N HL2 A 413 C1 PPI B 406 1555 1555 1.35
LINK N MAA B 404 C ALA B 405 1555 1555 1.48
LINK NE2 HIS A 327 ZN ZN A 406 1555 1555 1.99
LINK ZN ZN A 406 O HOH A 769 1555 1555 1.99
LINK ZN ZN A 406 OE2 GLU B 226 4555 1555 1.95
CRYST1 72.644 95.813 126.801 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013766 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010437 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007886 0.00000