HEADER TRANSFERASE 01-SEP-23 8QEU TITLE CRYSTAL STRUCTURE OF ORNITHINE TRANSCARBAMYLASE FROM ARABIDOPSIS TITLE 2 THALIANA (ATOTC) IN COMPLEX WITH ORNITHINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE TRANSCARBAMYLASE, CHLOROPLASTIC; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: OTCASE,ORNITHINE CARBAMOYLTRANSFERASE,CHLOROPLASTIC; COMPND 5 EC: 2.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: OTC, AT1G75330, F1B16.13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TRANSCARBAMYLASE, CARBAMOYL TRANSFERASE, UREA CYCLE, ARGININE KEYWDS 2 BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NIELIPINSKI,A.PIETRZYK-BRZEZINSKA,B.SEKULA REVDAT 2 17-JAN-24 8QEU 1 JRNL REVDAT 1 06-DEC-23 8QEU 0 JRNL AUTH M.NIELIPINSKI,A.J.PIETRZYK-BRZEZINSKA,A.WLODAWER,B.SEKULA JRNL TITL STRUCTURAL ANALYSIS AND MOLECULAR SUBSTRATE RECOGNITION JRNL TITL 2 PROPERTIES OF ARABIDOPSIS THALIANA ORNITHINE JRNL TITL 3 TRANSCARBAMYLASE, THE MOLECULAR TARGET OF PHASEOLOTOXIN JRNL TITL 4 PRODUCED BY PSEUDOMONAS SYRINGAE . JRNL REF FRONT PLANT SCI V. 14 97956 2023 JRNL REFN ESSN 1664-462X JRNL PMID 38179474 JRNL DOI 10.3389/FPLS.2023.1297956 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 207402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 1278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7562 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 7278 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10221 ; 1.702 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16793 ; 0.622 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 967 ; 6.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ;10.556 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1339 ;14.200 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1128 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8838 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1690 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3724 ; 1.548 ; 1.894 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3724 ; 1.548 ; 1.894 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4661 ; 2.174 ; 3.428 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4662 ; 2.174 ; 3.428 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3838 ; 1.941 ; 2.207 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3839 ; 1.942 ; 2.208 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5535 ; 2.516 ; 3.896 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8775 ; 4.388 ;22.850 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8316 ; 3.627 ;19.520 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 14840 ; 4.273 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208445 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.330 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.14 REMARK 200 R MERGE FOR SHELL (I) : 0.93300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 16%, LITHIUM SULFATE 0.3M, REMARK 280 HEPES 0.1M PH 6.0, 20MM ORNITHINE, CRYOPROTECTION WAS OBTAINED REMARK 280 BY 25% PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.77050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.77050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.65350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.65350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.77050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.65350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.77050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.65350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 C 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 750 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 891 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 52 REMARK 465 ASN A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 VAL A 57 REMARK 465 THR A 58 REMARK 465 SER A 59 REMARK 465 PRO A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 PRO A 63 REMARK 465 SER A 64 REMARK 465 ASP A 65 REMARK 465 VAL A 66 REMARK 465 LYS A 67 REMARK 465 GLY A 68 REMARK 465 LYS A 69 REMARK 465 SER A 70 REMARK 465 ASP A 71 REMARK 465 SER B 52 REMARK 465 ASN B 53 REMARK 465 ALA B 54 REMARK 465 SER B 55 REMARK 465 SER B 56 REMARK 465 VAL B 57 REMARK 465 THR B 58 REMARK 465 SER B 59 REMARK 465 PRO B 60 REMARK 465 SER B 61 REMARK 465 SER B 62 REMARK 465 PRO B 63 REMARK 465 SER B 64 REMARK 465 ASP B 65 REMARK 465 VAL B 66 REMARK 465 LYS B 67 REMARK 465 GLY B 68 REMARK 465 LYS B 69 REMARK 465 SER B 70 REMARK 465 ASP B 71 REMARK 465 SER C 52 REMARK 465 ASN C 53 REMARK 465 ALA C 54 REMARK 465 SER C 55 REMARK 465 SER C 56 REMARK 465 VAL C 57 REMARK 465 THR C 58 REMARK 465 SER C 59 REMARK 465 PRO C 60 REMARK 465 SER C 61 REMARK 465 SER C 62 REMARK 465 PRO C 63 REMARK 465 SER C 64 REMARK 465 ASP C 65 REMARK 465 VAL C 66 REMARK 465 LYS C 67 REMARK 465 GLY C 68 REMARK 465 LYS C 69 REMARK 465 SER C 70 REMARK 465 ASP C 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 176 -91.64 -83.81 REMARK 500 LEU A 196 125.02 120.67 REMARK 500 LEU A 196 124.95 120.78 REMARK 500 HIS A 201 66.58 -159.72 REMARK 500 ASN A 231 -166.03 -128.46 REMARK 500 LEU A 334 157.62 74.91 REMARK 500 VAL A 340 -92.85 -108.01 REMARK 500 ILE B 149 -31.19 -136.04 REMARK 500 GLN B 150 36.90 73.50 REMARK 500 LYS B 153 -67.31 -124.72 REMARK 500 PHE B 176 -80.97 -87.33 REMARK 500 LEU B 196 123.21 126.28 REMARK 500 LEU B 196 122.94 126.49 REMARK 500 HIS B 201 70.93 -156.64 REMARK 500 ASN B 231 -164.10 -121.08 REMARK 500 LEU B 334 160.65 72.21 REMARK 500 VAL B 340 -91.56 -108.56 REMARK 500 MET C 124 -60.25 -105.38 REMARK 500 LYS C 153 -56.55 -127.84 REMARK 500 PHE C 176 -90.91 -87.38 REMARK 500 LEU C 196 133.33 123.05 REMARK 500 LEU C 196 134.55 121.95 REMARK 500 HIS C 201 67.91 -155.87 REMARK 500 ASN C 231 -166.67 -123.99 REMARK 500 LEU C 334 155.65 72.65 REMARK 500 VAL C 340 -92.08 -109.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 125 0.11 SIDE CHAIN REMARK 500 ARG A 174 0.09 SIDE CHAIN REMARK 500 ARG A 361 0.08 SIDE CHAIN REMARK 500 ARG B 125 0.10 SIDE CHAIN REMARK 500 ARG B 174 0.21 SIDE CHAIN REMARK 500 ARG B 361 0.08 SIDE CHAIN REMARK 500 ARG C 125 0.12 SIDE CHAIN REMARK 500 ARG C 174 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 927 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 925 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 926 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH C 925 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 126 OG1 REMARK 620 2 SO4 A 405 O3 106.7 REMARK 620 3 SO4 A 405 O4 61.1 52.8 REMARK 620 4 HOH A 571 O 138.7 62.2 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 302 O REMARK 620 2 HOH A 679 O 66.4 REMARK 620 3 HOH A 811 O 74.7 141.1 REMARK 620 4 HOH A 840 O 135.7 112.2 93.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 126 OG1 REMARK 620 2 SO4 B 405 O3 64.4 REMARK 620 3 SO4 B 405 O4 109.5 47.1 REMARK 620 4 HOH B 601 O 142.5 111.8 68.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 126 OG1 REMARK 620 2 SO4 C 405 O3 63.3 REMARK 620 3 SO4 C 405 O4 109.1 48.9 REMARK 620 4 HOH C 663 O 140.8 112.7 66.5 REMARK 620 N 1 2 3 DBREF 8QEU A 54 375 UNP O50039 OTC_ARATH 54 375 DBREF 8QEU B 54 375 UNP O50039 OTC_ARATH 54 375 DBREF 8QEU C 54 375 UNP O50039 OTC_ARATH 54 375 SEQADV 8QEU SER A 52 UNP O50039 EXPRESSION TAG SEQADV 8QEU ASN A 53 UNP O50039 EXPRESSION TAG SEQADV 8QEU SER B 52 UNP O50039 EXPRESSION TAG SEQADV 8QEU ASN B 53 UNP O50039 EXPRESSION TAG SEQADV 8QEU SER C 52 UNP O50039 EXPRESSION TAG SEQADV 8QEU ASN C 53 UNP O50039 EXPRESSION TAG SEQRES 1 A 324 SER ASN ALA SER SER VAL THR SER PRO SER SER PRO SER SEQRES 2 A 324 ASP VAL LYS GLY LYS SER ASP LEU LYS ASP PHE LEU ALA SEQRES 3 A 324 ILE ASP ASP PHE ASP THR ALA THR ILE LYS THR ILE LEU SEQRES 4 A 324 ASP LYS ALA SER GLU VAL LYS ALA LEU LEU LYS SER GLY SEQRES 5 A 324 GLU ARG ASN TYR LEU PRO PHE LYS GLY LYS SER MET SER SEQRES 6 A 324 MET ILE PHE ALA LYS PRO SER MET ARG THR ARG VAL SER SEQRES 7 A 324 PHE GLU THR GLY PHE PHE LEU LEU GLY GLY HIS ALA LEU SEQRES 8 A 324 TYR LEU GLY PRO ASN ASP ILE GLN MET GLY LYS ARG GLU SEQRES 9 A 324 GLU THR ARG ASP VAL ALA ARG VAL LEU SER ARG TYR ASN SEQRES 10 A 324 ASP ILE ILE MET ALA ARG VAL PHE ALA HIS GLN ASP ILE SEQRES 11 A 324 LEU ASP LEU ALA ASN TYR SER SER VAL PRO VAL VAL ASN SEQRES 12 A 324 GLY LEU THR ASP HIS ASN HIS PRO CYS GLN ILE MET ALA SEQRES 13 A 324 ASP ALA LEU THR MET ILE GLU HIS ILE GLY GLN VAL GLU SEQRES 14 A 324 GLY THR LYS VAL VAL TYR VAL GLY ASP GLY ASN ASN MET SEQRES 15 A 324 VAL HIS SER TRP LEU GLU LEU ALA SER VAL ILE PRO PHE SEQRES 16 A 324 HIS PHE VAL CYS ALA CYS PRO LYS GLY TYR GLU PRO ASP SEQRES 17 A 324 LYS GLU ARG VAL SER LYS ALA LYS GLN ALA GLY LEU SER SEQRES 18 A 324 LYS ILE GLU ILE THR ASN ASP PRO LYS GLU ALA VAL ILE SEQRES 19 A 324 GLY ALA ASP VAL VAL TYR SER ASP VAL TRP ALA SER MET SEQRES 20 A 324 GLY GLN LYS ASP GLU ALA GLU ALA ARG ARG LYS ALA PHE SEQRES 21 A 324 GLN GLY PHE GLN VAL ASP GLU ALA LEU MET LYS LEU ALA SEQRES 22 A 324 GLY GLN LYS ALA TYR PHE MET HIS CYS LEU PRO ALA GLU SEQRES 23 A 324 ARG GLY VAL GLU VAL THR ASN GLY VAL VAL GLU ALA PRO SEQRES 24 A 324 TYR SER ILE VAL PHE PRO GLN ALA GLU ASN ARG MET HIS SEQRES 25 A 324 ALA GLN ASN ALA ILE MET LEU HIS LEU LEU GLY PHE SEQRES 1 B 324 SER ASN ALA SER SER VAL THR SER PRO SER SER PRO SER SEQRES 2 B 324 ASP VAL LYS GLY LYS SER ASP LEU LYS ASP PHE LEU ALA SEQRES 3 B 324 ILE ASP ASP PHE ASP THR ALA THR ILE LYS THR ILE LEU SEQRES 4 B 324 ASP LYS ALA SER GLU VAL LYS ALA LEU LEU LYS SER GLY SEQRES 5 B 324 GLU ARG ASN TYR LEU PRO PHE LYS GLY LYS SER MET SER SEQRES 6 B 324 MET ILE PHE ALA LYS PRO SER MET ARG THR ARG VAL SER SEQRES 7 B 324 PHE GLU THR GLY PHE PHE LEU LEU GLY GLY HIS ALA LEU SEQRES 8 B 324 TYR LEU GLY PRO ASN ASP ILE GLN MET GLY LYS ARG GLU SEQRES 9 B 324 GLU THR ARG ASP VAL ALA ARG VAL LEU SER ARG TYR ASN SEQRES 10 B 324 ASP ILE ILE MET ALA ARG VAL PHE ALA HIS GLN ASP ILE SEQRES 11 B 324 LEU ASP LEU ALA ASN TYR SER SER VAL PRO VAL VAL ASN SEQRES 12 B 324 GLY LEU THR ASP HIS ASN HIS PRO CYS GLN ILE MET ALA SEQRES 13 B 324 ASP ALA LEU THR MET ILE GLU HIS ILE GLY GLN VAL GLU SEQRES 14 B 324 GLY THR LYS VAL VAL TYR VAL GLY ASP GLY ASN ASN MET SEQRES 15 B 324 VAL HIS SER TRP LEU GLU LEU ALA SER VAL ILE PRO PHE SEQRES 16 B 324 HIS PHE VAL CYS ALA CYS PRO LYS GLY TYR GLU PRO ASP SEQRES 17 B 324 LYS GLU ARG VAL SER LYS ALA LYS GLN ALA GLY LEU SER SEQRES 18 B 324 LYS ILE GLU ILE THR ASN ASP PRO LYS GLU ALA VAL ILE SEQRES 19 B 324 GLY ALA ASP VAL VAL TYR SER ASP VAL TRP ALA SER MET SEQRES 20 B 324 GLY GLN LYS ASP GLU ALA GLU ALA ARG ARG LYS ALA PHE SEQRES 21 B 324 GLN GLY PHE GLN VAL ASP GLU ALA LEU MET LYS LEU ALA SEQRES 22 B 324 GLY GLN LYS ALA TYR PHE MET HIS CYS LEU PRO ALA GLU SEQRES 23 B 324 ARG GLY VAL GLU VAL THR ASN GLY VAL VAL GLU ALA PRO SEQRES 24 B 324 TYR SER ILE VAL PHE PRO GLN ALA GLU ASN ARG MET HIS SEQRES 25 B 324 ALA GLN ASN ALA ILE MET LEU HIS LEU LEU GLY PHE SEQRES 1 C 324 SER ASN ALA SER SER VAL THR SER PRO SER SER PRO SER SEQRES 2 C 324 ASP VAL LYS GLY LYS SER ASP LEU LYS ASP PHE LEU ALA SEQRES 3 C 324 ILE ASP ASP PHE ASP THR ALA THR ILE LYS THR ILE LEU SEQRES 4 C 324 ASP LYS ALA SER GLU VAL LYS ALA LEU LEU LYS SER GLY SEQRES 5 C 324 GLU ARG ASN TYR LEU PRO PHE LYS GLY LYS SER MET SER SEQRES 6 C 324 MET ILE PHE ALA LYS PRO SER MET ARG THR ARG VAL SER SEQRES 7 C 324 PHE GLU THR GLY PHE PHE LEU LEU GLY GLY HIS ALA LEU SEQRES 8 C 324 TYR LEU GLY PRO ASN ASP ILE GLN MET GLY LYS ARG GLU SEQRES 9 C 324 GLU THR ARG ASP VAL ALA ARG VAL LEU SER ARG TYR ASN SEQRES 10 C 324 ASP ILE ILE MET ALA ARG VAL PHE ALA HIS GLN ASP ILE SEQRES 11 C 324 LEU ASP LEU ALA ASN TYR SER SER VAL PRO VAL VAL ASN SEQRES 12 C 324 GLY LEU THR ASP HIS ASN HIS PRO CYS GLN ILE MET ALA SEQRES 13 C 324 ASP ALA LEU THR MET ILE GLU HIS ILE GLY GLN VAL GLU SEQRES 14 C 324 GLY THR LYS VAL VAL TYR VAL GLY ASP GLY ASN ASN MET SEQRES 15 C 324 VAL HIS SER TRP LEU GLU LEU ALA SER VAL ILE PRO PHE SEQRES 16 C 324 HIS PHE VAL CYS ALA CYS PRO LYS GLY TYR GLU PRO ASP SEQRES 17 C 324 LYS GLU ARG VAL SER LYS ALA LYS GLN ALA GLY LEU SER SEQRES 18 C 324 LYS ILE GLU ILE THR ASN ASP PRO LYS GLU ALA VAL ILE SEQRES 19 C 324 GLY ALA ASP VAL VAL TYR SER ASP VAL TRP ALA SER MET SEQRES 20 C 324 GLY GLN LYS ASP GLU ALA GLU ALA ARG ARG LYS ALA PHE SEQRES 21 C 324 GLN GLY PHE GLN VAL ASP GLU ALA LEU MET LYS LEU ALA SEQRES 22 C 324 GLY GLN LYS ALA TYR PHE MET HIS CYS LEU PRO ALA GLU SEQRES 23 C 324 ARG GLY VAL GLU VAL THR ASN GLY VAL VAL GLU ALA PRO SEQRES 24 C 324 TYR SER ILE VAL PHE PRO GLN ALA GLU ASN ARG MET HIS SEQRES 25 C 324 ALA GLN ASN ALA ILE MET LEU HIS LEU LEU GLY PHE HET ORN A 401 9 HET PEG A 402 7 HET EDO A 403 4 HET SO4 A 404 5 HET SO4 A 405 5 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET NA A 410 1 HET NA A 411 1 HET ORN B 401 9 HET PEG B 402 7 HET EDO B 403 4 HET EDO B 404 4 HET SO4 B 405 5 HET EDO B 406 4 HET NA B 407 1 HET ORN C 401 9 HET PEG C 402 7 HET EDO C 403 4 HET ORN C 404 9 HET SO4 C 405 5 HET SO4 C 406 5 HET SO4 C 407 5 HET EDO C 408 4 HET EDO C 409 4 HET EDO C 410 4 HET NA C 411 1 HETNAM ORN L-ORNITHINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ORN 4(C5 H12 N2 O2) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 6 EDO 12(C2 H6 O2) FORMUL 7 SO4 6(O4 S 2-) FORMUL 13 NA 4(NA 1+) FORMUL 33 HOH *1278(H2 O) HELIX 1 AA1 ALA A 77 PHE A 81 5 5 HELIX 2 AA2 ASP A 82 SER A 102 1 21 HELIX 3 AA3 MET A 124 LEU A 137 1 14 HELIX 4 AA4 GLU A 156 ASN A 168 1 13 HELIX 5 AA5 ALA A 177 SER A 188 1 12 HELIX 6 AA6 HIS A 201 ILE A 216 1 16 HELIX 7 AA7 ASN A 231 SER A 242 1 12 HELIX 8 AA8 ASP A 259 GLY A 270 1 12 HELIX 9 AA9 ASP A 279 VAL A 284 1 6 HELIX 10 AB1 GLN A 300 ASP A 302 5 3 HELIX 11 AB2 GLU A 303 PHE A 311 1 9 HELIX 12 AB3 ASP A 317 GLY A 325 1 9 HELIX 13 AB4 THR A 343 GLU A 348 1 6 HELIX 14 AB5 ILE A 353 LEU A 373 1 21 HELIX 15 AB6 ALA B 77 PHE B 81 5 5 HELIX 16 AB7 ASP B 82 SER B 102 1 21 HELIX 17 AB8 MET B 124 LEU B 137 1 14 HELIX 18 AB9 GLY B 145 GLN B 150 1 6 HELIX 19 AC1 GLU B 156 ASN B 168 1 13 HELIX 20 AC2 ALA B 177 SER B 188 1 12 HELIX 21 AC3 HIS B 201 ILE B 216 1 16 HELIX 22 AC4 ASN B 231 SER B 242 1 12 HELIX 23 AC5 ASP B 259 GLY B 270 1 12 HELIX 24 AC6 ASP B 279 VAL B 284 1 6 HELIX 25 AC7 GLN B 300 PHE B 311 1 12 HELIX 26 AC8 ASP B 317 GLY B 325 1 9 HELIX 27 AC9 THR B 343 GLU B 348 1 6 HELIX 28 AD1 ILE B 353 LEU B 373 1 21 HELIX 29 AD2 ALA C 77 PHE C 81 5 5 HELIX 30 AD3 ASP C 82 SER C 102 1 21 HELIX 31 AD4 MET C 124 LEU C 137 1 14 HELIX 32 AD5 GLY C 145 GLN C 150 1 6 HELIX 33 AD6 GLU C 156 ASN C 168 1 13 HELIX 34 AD7 ALA C 177 SER C 188 1 12 HELIX 35 AD8 HIS C 201 ILE C 216 1 16 HELIX 36 AD9 ASN C 231 SER C 242 1 12 HELIX 37 AE1 ASP C 259 GLY C 270 1 12 HELIX 38 AE2 ASP C 279 VAL C 284 1 6 HELIX 39 AE3 GLN C 300 ASP C 302 5 3 HELIX 40 AE4 GLU C 303 PHE C 311 1 9 HELIX 41 AE5 ASP C 317 GLY C 325 1 9 HELIX 42 AE6 THR C 343 GLU C 348 1 6 HELIX 43 AE7 ILE C 353 LEU C 373 1 21 SHEET 1 AA1 4 HIS A 140 LEU A 144 0 SHEET 2 AA1 4 SER A 114 PHE A 119 1 N MET A 115 O LEU A 142 SHEET 3 AA1 4 ILE A 170 ARG A 174 1 O MET A 172 N ILE A 118 SHEET 4 AA1 4 VAL A 192 ASN A 194 1 O VAL A 193 N ILE A 171 SHEET 1 AA2 5 LYS A 273 THR A 277 0 SHEET 2 AA2 5 HIS A 247 ALA A 251 1 N PHE A 248 O LYS A 273 SHEET 3 AA2 5 LYS A 223 VAL A 227 1 N TYR A 226 O ALA A 251 SHEET 4 AA2 5 VAL A 289 SER A 292 1 O VAL A 289 N VAL A 225 SHEET 5 AA2 5 TYR A 329 HIS A 332 1 O TYR A 329 N VAL A 290 SHEET 1 AA3 4 HIS B 140 LEU B 144 0 SHEET 2 AA3 4 SER B 114 PHE B 119 1 N MET B 115 O LEU B 142 SHEET 3 AA3 4 ILE B 170 ARG B 174 1 O MET B 172 N ILE B 118 SHEET 4 AA3 4 VAL B 192 ASN B 194 1 O VAL B 193 N ILE B 171 SHEET 1 AA4 5 LYS B 273 THR B 277 0 SHEET 2 AA4 5 HIS B 247 ALA B 251 1 N CYS B 250 O THR B 277 SHEET 3 AA4 5 LYS B 223 VAL B 227 1 N TYR B 226 O ALA B 251 SHEET 4 AA4 5 VAL B 289 SER B 292 1 O VAL B 289 N VAL B 225 SHEET 5 AA4 5 TYR B 329 HIS B 332 1 O MET B 331 N VAL B 290 SHEET 1 AA5 4 HIS C 140 LEU C 144 0 SHEET 2 AA5 4 SER C 114 PHE C 119 1 N MET C 115 O LEU C 142 SHEET 3 AA5 4 ILE C 170 ARG C 174 1 O MET C 172 N ILE C 118 SHEET 4 AA5 4 VAL C 192 ASN C 194 1 O VAL C 193 N ILE C 171 SHEET 1 AA6 5 LYS C 273 THR C 277 0 SHEET 2 AA6 5 HIS C 247 ALA C 251 1 N PHE C 248 O LYS C 273 SHEET 3 AA6 5 LYS C 223 VAL C 227 1 N TYR C 226 O ALA C 251 SHEET 4 AA6 5 VAL C 289 SER C 292 1 O VAL C 289 N VAL C 225 SHEET 5 AA6 5 TYR C 329 HIS C 332 1 O TYR C 329 N VAL C 290 LINK OG1 THR A 126 NA NA A 411 1555 1555 2.85 LINK O ASP A 302 NA NA A 410 1555 1555 3.01 LINK O3 SO4 A 405 NA NA A 411 1555 1555 2.53 LINK O4 SO4 A 405 NA NA A 411 1555 1555 2.93 LINK NA NA A 410 O HOH A 679 1555 1555 3.01 LINK NA NA A 410 O HOH A 811 1555 1555 2.87 LINK NA NA A 410 O HOH A 840 1555 1555 2.75 LINK NA NA A 411 O HOH A 571 1555 1555 2.70 LINK OG1 THR B 126 NA NA B 407 1555 1555 3.04 LINK O3 SO4 B 405 NA NA B 407 1555 1555 3.08 LINK O4 SO4 B 405 NA NA B 407 1555 1555 2.86 LINK NA NA B 407 O HOH B 601 1555 1555 2.72 LINK OG1 THR C 126 NA NA C 411 1555 1555 2.90 LINK O3 SO4 C 405 NA NA C 411 1555 1555 3.00 LINK O4 SO4 C 405 NA NA C 411 1555 1555 2.82 LINK NA NA C 411 O HOH C 663 1555 1555 2.71 CISPEP 1 LEU A 334 PRO A 335 0 -4.50 CISPEP 2 LEU B 334 PRO B 335 0 -4.94 CISPEP 3 LEU C 334 PRO C 335 0 -3.90 CRYST1 89.307 155.380 189.541 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005276 0.00000