HEADER LYASE 04-SEP-23 8QFH TITLE ROOM TEMPERATURE CRYSTAL STRUCTURE OF THE PHOTOACTIVATED ADENYLATE TITLE 2 CYCLASE OAPAC WITH ATP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY 3 ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSCILLATORIA ACUMINATA PCC 6304; SOURCE 3 ORGANISM_TAXID: 56110; SOURCE 4 GENE: OSCIL6304_3613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTORECEPTOR, BLUF, ADENYLATE CYCLASE, PAC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DOERNER,H.HAN, AUTHOR 2 J.C.P.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT,R.SECAREANU,D.VON AUTHOR 3 STETTEN,M.VAKILI,A.WRONA,R.BEAN,A.MANCUSO,J.SCHULZ,A.R.PEARSON, AUTHOR 4 T.KOTTKE,K.LORENZEN,R.SCHUBERT REVDAT 3 13-MAR-24 8QFH 1 JRNL REVDAT 2 24-JAN-24 8QFH 1 JRNL REVDAT 1 01-NOV-23 8QFH 0 JRNL AUTH A.CHRETIEN,M.F.NAGEL,S.BOTHA,R.DE WIJN,L.BRINGS,K.DORNER, JRNL AUTH 2 H.HAN,J.C.P.KOLIYADU,R.LETRUN,A.ROUND,T.SATO,C.SCHMIDT, JRNL AUTH 3 R.C.SECAREANU,D.VON STETTEN,M.VAKILI,A.WRONA,R.BEAN, JRNL AUTH 4 A.MANCUSO,J.SCHULZ,A.R.PEARSON,T.KOTTKE,K.LORENZEN, JRNL AUTH 5 R.SCHUBERT JRNL TITL LIGHT-INDUCED TRP IN /MET OUT SWITCHING DURING BLUF DOMAIN JRNL TITL 2 ACTIVATION IN ATP-BOUND PHOTOACTIVATABLE ADENYLATE CYCLASE JRNL TITL 3 OAPAC. JRNL REF J.MOL.BIOL. V. 436 68439 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38185322 JRNL DOI 10.1016/J.JMB.2024.168439 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.630 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6300 - 5.4600 1.00 1366 150 0.1815 0.2170 REMARK 3 2 5.4600 - 4.3400 1.00 1278 169 0.1272 0.1605 REMARK 3 3 4.3300 - 3.7900 1.00 1297 145 0.1346 0.1428 REMARK 3 4 3.7900 - 3.4400 1.00 1288 132 0.1431 0.1734 REMARK 3 5 3.4400 - 3.2000 1.00 1275 132 0.1634 0.1674 REMARK 3 6 3.2000 - 3.0100 1.00 1266 144 0.1666 0.2112 REMARK 3 7 3.0100 - 2.8600 1.00 1255 137 0.1792 0.1801 REMARK 3 8 2.8600 - 2.7300 1.00 1267 144 0.1741 0.2234 REMARK 3 9 2.7300 - 2.6300 1.00 1254 142 0.1853 0.2157 REMARK 3 10 2.6300 - 2.5400 1.00 1253 150 0.1715 0.2249 REMARK 3 11 2.5400 - 2.4600 1.00 1252 135 0.1738 0.2280 REMARK 3 12 2.4600 - 2.3900 1.00 1254 141 0.1822 0.2071 REMARK 3 13 2.3900 - 2.3200 0.99 1254 122 0.1831 0.2209 REMARK 3 14 2.3200 - 2.2700 1.00 1216 157 0.1600 0.2154 REMARK 3 15 2.2700 - 2.2200 0.99 1232 145 0.1824 0.2414 REMARK 3 16 2.2200 - 2.1700 0.99 1232 130 0.1937 0.2006 REMARK 3 17 2.1700 - 2.1300 1.00 1273 141 0.1864 0.2063 REMARK 3 18 2.1300 - 2.0900 1.00 1240 126 0.1946 0.2220 REMARK 3 19 2.0900 - 2.0500 1.00 1233 138 0.1874 0.2301 REMARK 3 20 2.0500 - 2.0100 1.00 1246 135 0.1769 0.2081 REMARK 3 21 2.0100 - 1.9800 1.00 1249 148 0.1758 0.2108 REMARK 3 22 1.9800 - 1.9500 1.00 1263 110 0.1761 0.2044 REMARK 3 23 1.9500 - 1.9200 1.00 1260 134 0.1849 0.2360 REMARK 3 24 1.9200 - 1.8900 1.00 1218 146 0.2012 0.2178 REMARK 3 25 1.8900 - 1.8700 1.00 1254 119 0.2507 0.2834 REMARK 3 26 1.8700 - 1.8500 1.00 1242 150 0.3045 0.3470 REMARK 3 27 1.8500 - 1.8200 1.00 1243 120 0.3222 0.3740 REMARK 3 28 1.8200 - 1.8000 1.00 1273 128 0.3416 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.207 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.745 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3170 REMARK 3 ANGLE : 0.875 4372 REMARK 3 CHIRALITY : 0.060 502 REMARK 3 PLANARITY : 0.011 561 REMARK 3 DIHEDRAL : 7.995 474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:99) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2679 -10.7547 -9.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.5114 T22: 0.3685 REMARK 3 T33: 0.4017 T12: -0.0374 REMARK 3 T13: 0.0169 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 5.1868 L22: 5.7089 REMARK 3 L33: 6.5276 L12: 0.3143 REMARK 3 L13: 0.3218 L23: -2.8451 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.3045 S13: -0.1040 REMARK 3 S21: 0.1745 S22: 0.0942 S23: 0.2262 REMARK 3 S31: 0.1143 S32: -0.1580 S33: -0.0875 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 100:128) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2917 -6.7119 -25.4947 REMARK 3 T TENSOR REMARK 3 T11: 0.6441 T22: 0.3745 REMARK 3 T33: 0.4104 T12: 0.0275 REMARK 3 T13: -0.0014 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.8169 L22: 4.5683 REMARK 3 L33: 3.2785 L12: 1.4976 REMARK 3 L13: 0.4036 L23: 0.6240 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0114 S13: -0.4106 REMARK 3 S21: 0.1613 S22: 0.0456 S23: 0.0889 REMARK 3 S31: 0.8086 S32: 0.1821 S33: -0.0440 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 129:145) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8812 7.9566 -24.3142 REMARK 3 T TENSOR REMARK 3 T11: 0.5274 T22: 0.5312 REMARK 3 T33: 0.6278 T12: -0.0523 REMARK 3 T13: -0.0368 T23: 0.0655 REMARK 3 L TENSOR REMARK 3 L11: 6.1362 L22: 4.9011 REMARK 3 L33: 3.7065 L12: -5.4662 REMARK 3 L13: 4.6513 L23: -4.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.1614 S12: -0.6827 S13: -0.5075 REMARK 3 S21: -0.0231 S22: 0.3477 S23: 0.6549 REMARK 3 S31: 0.3701 S32: -0.1231 S33: -0.6179 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 146:250) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2144 26.0591 -11.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.3479 T22: 0.3190 REMARK 3 T33: 0.3363 T12: -0.0037 REMARK 3 T13: -0.0020 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.3518 L22: 1.5061 REMARK 3 L33: 1.7646 L12: -0.1926 REMARK 3 L13: 0.6513 L23: 0.2762 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.0380 S13: 0.0164 REMARK 3 S21: 0.1870 S22: 0.0477 S23: -0.0882 REMARK 3 S31: 0.0516 S32: 0.0393 S33: -0.0655 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 251:328) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2314 33.0237 -16.1830 REMARK 3 T TENSOR REMARK 3 T11: 0.3519 T22: 0.4239 REMARK 3 T33: 0.4156 T12: 0.0425 REMARK 3 T13: 0.0315 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.5262 L22: 3.2013 REMARK 3 L33: 4.3605 L12: 0.0910 REMARK 3 L13: -0.1218 L23: 2.2638 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0098 S13: 0.1015 REMARK 3 S21: -0.1015 S22: 0.0198 S23: 0.0661 REMARK 3 S31: -0.2939 S32: -0.2343 S33: -0.0516 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 329:339) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5921 40.6205 -4.1997 REMARK 3 T TENSOR REMARK 3 T11: 1.4989 T22: 1.0949 REMARK 3 T33: 1.4760 T12: 0.1837 REMARK 3 T13: -0.1087 T23: -0.2973 REMARK 3 L TENSOR REMARK 3 L11: 1.4573 L22: 1.5701 REMARK 3 L33: 0.3104 L12: -0.8815 REMARK 3 L13: -0.1745 L23: 0.6020 REMARK 3 S TENSOR REMARK 3 S11: 0.5957 S12: 0.2510 S13: 1.4532 REMARK 3 S21: 0.6344 S22: -0.6842 S23: 1.8720 REMARK 3 S31: -1.9054 S32: -0.7170 S33: 0.0037 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 340:350) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0028 36.4083 -10.6251 REMARK 3 T TENSOR REMARK 3 T11: 1.0613 T22: 0.6270 REMARK 3 T33: 1.0699 T12: -0.2921 REMARK 3 T13: -0.1008 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 9.1256 L22: 5.2187 REMARK 3 L33: 4.6544 L12: 5.5839 REMARK 3 L13: -0.3772 L23: -3.0947 REMARK 3 S TENSOR REMARK 3 S11: -1.1647 S12: 1.1621 S13: -1.1984 REMARK 3 S21: -1.2001 S22: 0.3744 S23: -0.3391 REMARK 3 S31: -0.6825 S32: 1.0276 S33: 0.8067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : SPB/SFX REMARK 200 X-RAY GENERATOR MODEL : EUROPEAN XFEL BEAMLINE SPB/SFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : AGIPD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.10.1 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3079. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PROTEIN AT 12 MG/ML : 50 MM REMARK 280 TRIS/HCL PH 8.5, 50 MM SODIUM CHLORIDE, 5 MM ATP 45% REMARK 280 CRYSTALLIZATION BUFFER : 100 MM SPG BUFFER PH 7.0, 1.2 M REMARK 280 DISODIUM SUCCINATE, 100 MM GUANIDINE HYDROCHLORIDE, 5 MM REMARK 280 MAGNESIUM CHLORIDE 10% SEEDS FROM CRUSHED MACROCRYSTALS, BATCH REMARK 280 MODE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.90000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.90000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.65000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -52.65000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 580 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 THR A 309 OG1 CG2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 SER A 311 OG REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 SER A 317 OG REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 ILE A 320 CG1 CG2 CD1 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 SER A 333 OG REMARK 470 LEU A 337 CG CD1 CD2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 342 CG OD1 ND2 REMARK 470 HIS A 345 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 349 CG CD NE CZ NH1 NH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 310 REMARK 475 SER A 311 REMARK 475 GLU A 312 REMARK 475 LEU A 313 REMARK 475 LYS A 314 REMARK 475 GLY A 315 REMARK 475 LYS A 316 REMARK 475 SER A 317 REMARK 475 GLU A 318 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 319 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 325 HG1 THR A 330 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 92 94.90 -167.17 REMARK 500 THR A 309 50.68 -93.17 REMARK 500 GLU A 318 47.47 -149.31 REMARK 500 SER A 319 -158.90 61.36 REMARK 500 ILE A 320 131.07 -175.05 REMARK 500 LEU A 337 -50.04 73.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 144 0.08 SIDE CHAIN REMARK 500 ARG A 239 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD1 REMARK 620 2 ILE A 157 O 84.3 REMARK 620 3 ASP A 200 OD2 93.0 91.5 REMARK 620 4 ATP A 402 O2G 86.9 90.8 177.7 REMARK 620 5 ATP A 402 O2G 87.2 90.7 177.8 0.3 REMARK 620 6 ATP A 402 O1B 173.4 89.6 89.8 90.5 90.2 REMARK 620 7 ATP A 402 O1B 173.2 94.3 93.7 86.4 86.1 6.2 REMARK 620 8 ATP A 402 O2A 101.1 174.4 89.6 88.1 88.2 84.9 80.2 REMARK 620 9 ATP A 402 O2A 93.4 169.6 98.8 78.9 79.1 92.1 86.8 11.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 200 OD1 95.5 REMARK 620 3 ATP A 402 O2A 95.7 83.3 REMARK 620 4 ATP A 402 O2A 89.6 93.3 11.3 REMARK 620 5 HOH A 542 O 109.7 102.8 152.9 153.1 REMARK 620 6 HOH A 566 O 82.8 171.1 88.1 77.9 86.0 REMARK 620 N 1 2 3 4 5 DBREF 8QFH A 1 350 UNP K9TLZ5 K9TLZ5_9CYAN 1 350 SEQRES 1 A 350 MET LYS ARG LEU THR TYR ILE SER LYS PHE SER ARG PRO SEQRES 2 A 350 LEU SER GLY ASP GLU ILE GLU ALA ILE GLY ARG ILE SER SEQRES 3 A 350 SER GLN LYS ASN GLN GLN ALA ASN VAL THR GLY VAL LEU SEQRES 4 A 350 LEU CYS LEU ASP GLY ILE PHE PHE GLN ILE LEU GLU GLY SEQRES 5 A 350 GLU ALA GLU LYS ILE ASP ARG ILE TYR GLU ARG ILE LEU SEQRES 6 A 350 ALA ASP GLU ARG HIS THR ASP ILE LEU CYS LEU LYS SER SEQRES 7 A 350 GLU VAL GLU VAL GLN GLU ARG MET PHE PRO ASP TRP SER SEQRES 8 A 350 MET GLN THR ILE ASN LEU ASP GLU ASN THR ASP PHE LEU SEQRES 9 A 350 ILE ARG PRO ILE LYS VAL LEU LEU GLN THR LEU THR GLU SEQRES 10 A 350 SER HIS ARG ILE LEU GLU LYS TYR THR GLN PRO SER ILE SEQRES 11 A 350 PHE LYS ILE ILE SER GLN GLY THR ASN PRO LEU ASN ILE SEQRES 12 A 350 ARG PRO LYS ALA VAL GLU LYS ILE VAL PHE PHE SER ASP SEQRES 13 A 350 ILE VAL SER PHE SER THR PHE ALA GLU LYS LEU PRO VAL SEQRES 14 A 350 GLU GLU VAL VAL SER VAL VAL ASN SER TYR PHE SER VAL SEQRES 15 A 350 CYS THR ALA ILE ILE THR ARG GLN GLY GLY GLU VAL THR SEQRES 16 A 350 LYS PHE ILE GLY ASP CYS VAL MET ALA TYR PHE ASP GLY SEQRES 17 A 350 ASP CYS ALA ASP GLN ALA ILE GLN ALA SER LEU ASP ILE SEQRES 18 A 350 LEU MET GLU LEU GLU ILE LEU ARG ASN SER ALA PRO GLU SEQRES 19 A 350 GLY SER PRO LEU ARG VAL LEU TYR SER GLY ILE GLY LEU SEQRES 20 A 350 ALA LYS GLY LYS VAL ILE GLU GLY ASN ILE GLY SER GLU SEQRES 21 A 350 LEU LYS ARG ASP TYR THR ILE LEU GLY ASP ALA VAL ASN SEQRES 22 A 350 VAL ALA ALA ARG LEU GLU ALA LEU THR ARG GLN LEU SER SEQRES 23 A 350 GLN ALA LEU VAL PHE SER SER GLU VAL LYS ASN SER ALA SEQRES 24 A 350 THR LYS SER TRP ASN PHE ILE TRP LEU THR ASP SER GLU SEQRES 25 A 350 LEU LYS GLY LYS SER GLU SER ILE ASP ILE TYR SER ILE SEQRES 26 A 350 ASP ASN GLU MET THR ARG LYS SER SER GLY GLY LEU GLU SEQRES 27 A 350 ILE ALA ARG ASN ILE GLY HIS TYR LEU GLU ARG VAL HET FMN A 401 49 HET ATP A 402 84 HET MG A 403 1 HET MG A 404 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *81(H2 O) HELIX 1 AA1 SER A 15 ASN A 34 1 20 HELIX 2 AA2 GLU A 53 ALA A 66 1 14 HELIX 3 AA3 ASP A 98 ASN A 100 5 3 HELIX 4 AA4 LEU A 104 THR A 126 1 23 HELIX 5 AA5 GLN A 127 GLN A 136 1 10 HELIX 6 AA6 ASN A 139 ILE A 143 5 5 HELIX 7 AA7 SER A 159 LEU A 167 1 9 HELIX 8 AA8 PRO A 168 GLN A 190 1 23 HELIX 9 AA9 CYS A 210 ALA A 232 1 23 HELIX 10 AB1 SER A 236 LEU A 241 5 6 HELIX 11 AB2 GLY A 269 THR A 282 1 14 HELIX 12 AB3 SER A 293 ALA A 299 1 7 HELIX 13 AB4 ASN A 327 LYS A 332 1 6 HELIX 14 AB5 LEU A 337 ARG A 349 1 13 SHEET 1 AA1 5 HIS A 70 VAL A 80 0 SHEET 2 AA1 5 LYS A 2 PHE A 10 -1 N ARG A 3 O GLU A 79 SHEET 3 AA1 5 ILE A 45 GLY A 52 -1 O GLY A 52 N LYS A 2 SHEET 4 AA1 5 THR A 36 LEU A 42 -1 N LEU A 40 O PHE A 47 SHEET 5 AA1 5 GLN A 93 ASN A 96 1 O GLN A 93 N LEU A 39 SHEET 1 AA2 5 GLU A 193 ILE A 198 0 SHEET 2 AA2 5 CYS A 201 ASP A 207 -1 O CYS A 201 N ILE A 198 SHEET 3 AA2 5 LYS A 146 ILE A 157 -1 N PHE A 153 O ALA A 204 SHEET 4 AA2 5 SER A 243 GLY A 258 -1 O VAL A 252 N VAL A 148 SHEET 5 AA2 5 ARG A 263 LEU A 268 -1 O LEU A 268 N ILE A 253 SHEET 1 AA3 7 GLU A 193 ILE A 198 0 SHEET 2 AA3 7 CYS A 201 ASP A 207 -1 O CYS A 201 N ILE A 198 SHEET 3 AA3 7 LYS A 146 ILE A 157 -1 N PHE A 153 O ALA A 204 SHEET 4 AA3 7 SER A 243 GLY A 258 -1 O VAL A 252 N VAL A 148 SHEET 5 AA3 7 LEU A 289 SER A 292 1 O VAL A 290 N ILE A 245 SHEET 6 AA3 7 ILE A 322 ILE A 325 -1 O TYR A 323 N PHE A 291 SHEET 7 AA3 7 PHE A 305 LEU A 308 -1 N LEU A 308 O ILE A 322 LINK OD1 ASP A 156 MG MG A 403 1555 1555 2.00 LINK OD2 ASP A 156 MG MG A 404 1555 1555 2.34 LINK O ILE A 157 MG MG A 403 1555 1555 2.13 LINK OD2 ASP A 200 MG MG A 403 1555 1555 2.10 LINK OD1 ASP A 200 MG MG A 404 1555 1555 2.25 LINK O2GAATP A 402 MG MG A 403 1555 1555 2.06 LINK O2GBATP A 402 MG MG A 403 1555 1555 2.30 LINK O1BAATP A 402 MG MG A 403 1555 1555 2.16 LINK O1BBATP A 402 MG MG A 403 1555 1555 2.12 LINK O2AAATP A 402 MG MG A 403 1555 1555 2.16 LINK O2ABATP A 402 MG MG A 403 1555 1555 2.31 LINK O2AAATP A 402 MG MG A 404 1555 1555 2.42 LINK O2ABATP A 402 MG MG A 404 1555 1555 2.35 LINK MG MG A 404 O HOH A 542 1555 1555 2.41 LINK MG MG A 404 O HOH A 566 1555 1555 2.49 CRYST1 54.300 145.800 105.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009497 0.00000