HEADER TRANSFERASE 06-SEP-23 8QH2 TITLE CRYSTAL STRUCTURE OF CHIMERIC UAP1L1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLHEXOSAMINE PYROPHOSPHORYLASE,UDP-N- COMPND 3 ACETYLHEXOSAMINE PYROPHOSPHORYLASE-LIKE PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ANTIGEN X,AGX,SPERM-ASSOCIATED ANTIGEN 2; COMPND 6 EC: 2.7.7.83,2.7.7.23,2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UAP1, SPAG2, UAP1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHIMERA, UAP1L1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,K.YAN,S.BARTUAL,D.VAN AALTEN REVDAT 2 13-NOV-24 8QH2 1 REMARK REVDAT 1 18-SEP-24 8QH2 0 JRNL AUTH X.CHEN,K.YAN,S.BARTUAL,A.FERENBACH,D.VAN AALTEN JRNL TITL UAP1L1 IS AN ACTIVE PYROPHOSPHORYLASE WITH AN ACTIVE SITE JRNL TITL 2 DISULFIDE REGULATING PROTEIN THERMOSTABILITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0000 - 4.7000 1.00 2927 147 0.1829 0.2412 REMARK 3 2 4.7000 - 3.7300 1.00 2848 140 0.2211 0.2685 REMARK 3 3 3.7300 - 3.2600 1.00 2848 128 0.2778 0.3335 REMARK 3 4 3.2600 - 2.9600 1.00 2803 142 0.3227 0.4025 REMARK 3 5 2.9600 - 2.7500 1.00 2807 115 0.3870 0.3830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.508 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.698 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3898 REMARK 3 ANGLE : 1.063 5274 REMARK 3 CHIRALITY : 0.054 566 REMARK 3 PLANARITY : 0.009 698 REMARK 3 DIHEDRAL : 18.042 1465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -3:34) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1962 -56.7683 -18.7775 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.7628 REMARK 3 T33: 1.3469 T12: -0.3784 REMARK 3 T13: 0.3456 T23: -0.2680 REMARK 3 L TENSOR REMARK 3 L11: 1.0519 L22: 1.7908 REMARK 3 L33: 0.4481 L12: -1.2554 REMARK 3 L13: -0.1580 L23: -0.0994 REMARK 3 S TENSOR REMARK 3 S11: -0.8985 S12: 0.8262 S13: -1.0101 REMARK 3 S21: -0.2944 S22: 1.6161 S23: 0.8337 REMARK 3 S31: 0.1738 S32: -0.2790 S33: 0.7417 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:55) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1647 -46.6556 -3.6631 REMARK 3 T TENSOR REMARK 3 T11: 0.5736 T22: 0.7205 REMARK 3 T33: 0.7923 T12: 0.0767 REMARK 3 T13: 0.1898 T23: 0.0956 REMARK 3 L TENSOR REMARK 3 L11: 0.1179 L22: 2.5125 REMARK 3 L33: 0.4113 L12: -0.3314 REMARK 3 L13: 0.1063 L23: 0.2144 REMARK 3 S TENSOR REMARK 3 S11: 0.5359 S12: -0.4445 S13: -0.1626 REMARK 3 S21: 1.4798 S22: 0.2382 S23: 0.1254 REMARK 3 S31: -0.1436 S32: 0.4950 S33: 0.3480 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 56:80) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1840 -21.8180 14.8153 REMARK 3 T TENSOR REMARK 3 T11: 1.3156 T22: 0.6267 REMARK 3 T33: 0.6617 T12: -0.0328 REMARK 3 T13: -0.2602 T23: 0.0953 REMARK 3 L TENSOR REMARK 3 L11: 1.8887 L22: 0.0840 REMARK 3 L33: 0.0445 L12: 0.0704 REMARK 3 L13: -0.1293 L23: 0.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -1.1247 S13: -0.1234 REMARK 3 S21: 0.4274 S22: 0.1924 S23: 0.2403 REMARK 3 S31: 0.3475 S32: -0.0257 S33: -0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 84:89) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2118 -20.9034 18.0644 REMARK 3 T TENSOR REMARK 3 T11: 1.6283 T22: 1.1269 REMARK 3 T33: 1.1262 T12: -0.3558 REMARK 3 T13: -0.4240 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 0.0164 REMARK 3 L33: 0.0180 L12: 0.0106 REMARK 3 L13: -0.0092 L23: -0.0152 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: -0.1184 S13: -0.0449 REMARK 3 S21: -0.1156 S22: 0.1132 S23: -0.1045 REMARK 3 S31: -0.1968 S32: 0.1521 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 90:109) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6891 -35.9251 14.2426 REMARK 3 T TENSOR REMARK 3 T11: 1.0157 T22: 0.7312 REMARK 3 T33: 0.9279 T12: -0.4670 REMARK 3 T13: -0.7395 T23: 0.3157 REMARK 3 L TENSOR REMARK 3 L11: 0.6774 L22: 0.0001 REMARK 3 L33: 1.1469 L12: 0.0179 REMARK 3 L13: 0.2992 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: 0.2305 S12: -0.8991 S13: -0.3608 REMARK 3 S21: 1.0832 S22: -0.4396 S23: -0.2552 REMARK 3 S31: -1.0791 S32: -0.0924 S33: 0.5528 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 110:119) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0428 -34.5562 -10.6072 REMARK 3 T TENSOR REMARK 3 T11: 0.5323 T22: 0.8908 REMARK 3 T33: 0.8932 T12: 0.1124 REMARK 3 T13: -0.0920 T23: -0.3940 REMARK 3 L TENSOR REMARK 3 L11: -0.0090 L22: 0.0190 REMARK 3 L33: -0.0026 L12: 0.0113 REMARK 3 L13: 0.0019 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.3864 S12: 0.6468 S13: -0.4279 REMARK 3 S21: 0.3107 S22: -0.1618 S23: -0.1841 REMARK 3 S31: 0.1485 S32: 0.0631 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 120:139) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4623 -34.3940 -13.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.4949 T22: 0.9762 REMARK 3 T33: 0.7118 T12: 0.0577 REMARK 3 T13: -0.1480 T23: -0.3405 REMARK 3 L TENSOR REMARK 3 L11: 0.5069 L22: 0.7412 REMARK 3 L33: 0.0197 L12: -0.2047 REMARK 3 L13: 0.0896 L23: -0.0748 REMARK 3 S TENSOR REMARK 3 S11: -0.2109 S12: 1.2144 S13: -0.0401 REMARK 3 S21: -0.4518 S22: 0.2029 S23: -0.4414 REMARK 3 S31: -0.5556 S32: -1.0278 S33: 0.0041 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 140:183) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4983 -42.0877 -1.0345 REMARK 3 T TENSOR REMARK 3 T11: 0.6053 T22: 0.5554 REMARK 3 T33: 1.2805 T12: 0.0647 REMARK 3 T13: -0.4460 T23: -0.1269 REMARK 3 L TENSOR REMARK 3 L11: 1.3488 L22: 0.9304 REMARK 3 L33: 0.6256 L12: 0.5423 REMARK 3 L13: -0.9545 L23: -0.2164 REMARK 3 S TENSOR REMARK 3 S11: 0.6094 S12: 0.1412 S13: -1.8952 REMARK 3 S21: 0.7182 S22: -0.2975 S23: -0.9525 REMARK 3 S31: 0.3163 S32: -0.2087 S33: -0.3780 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 184:239) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2593 -45.9851 -5.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.4458 T22: 0.5952 REMARK 3 T33: 0.9463 T12: -0.1183 REMARK 3 T13: -0.1284 T23: -0.1862 REMARK 3 L TENSOR REMARK 3 L11: 0.6742 L22: 1.3205 REMARK 3 L33: 0.5173 L12: -0.0053 REMARK 3 L13: -0.0152 L23: -0.9628 REMARK 3 S TENSOR REMARK 3 S11: -0.4095 S12: 1.0955 S13: -0.6243 REMARK 3 S21: 0.7526 S22: 0.4630 S23: -0.4786 REMARK 3 S31: 0.1251 S32: -0.0801 S33: -0.1959 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 240:280) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3144 -36.2738 9.4994 REMARK 3 T TENSOR REMARK 3 T11: 1.0331 T22: 0.3903 REMARK 3 T33: 0.6801 T12: -0.0388 REMARK 3 T13: -0.4928 T23: 0.2143 REMARK 3 L TENSOR REMARK 3 L11: 2.3313 L22: 0.0040 REMARK 3 L33: 0.0954 L12: -0.2463 REMARK 3 L13: -0.4628 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.8899 S12: 0.0844 S13: -0.9768 REMARK 3 S21: 0.7750 S22: -0.8759 S23: -0.3997 REMARK 3 S31: -0.0150 S32: -0.5461 S33: -0.2807 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 281:301) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8035 -21.1655 6.0983 REMARK 3 T TENSOR REMARK 3 T11: 1.1493 T22: 0.6319 REMARK 3 T33: 0.4630 T12: 0.0518 REMARK 3 T13: 0.0074 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 0.1079 L22: 0.4013 REMARK 3 L33: 0.2671 L12: -0.0040 REMARK 3 L13: -0.0167 L23: 0.1901 REMARK 3 S TENSOR REMARK 3 S11: 0.3300 S12: 0.0708 S13: -0.0874 REMARK 3 S21: 1.3005 S22: -0.2296 S23: 0.2394 REMARK 3 S31: 0.0942 S32: -0.7828 S33: -0.0106 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 302:307) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5552 -26.2739 3.4307 REMARK 3 T TENSOR REMARK 3 T11: 1.0891 T22: 1.6086 REMARK 3 T33: 0.4445 T12: -0.2043 REMARK 3 T13: -0.0545 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 0.0709 L22: 0.0831 REMARK 3 L33: 0.0763 L12: -0.0828 REMARK 3 L13: -0.0737 L23: 0.0805 REMARK 3 S TENSOR REMARK 3 S11: -0.1178 S12: 0.4161 S13: 0.0163 REMARK 3 S21: -0.5131 S22: -0.2813 S23: 0.2745 REMARK 3 S31: -0.1702 S32: -0.2188 S33: 0.0183 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 308:318) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2700 -15.0970 4.2680 REMARK 3 T TENSOR REMARK 3 T11: 1.0252 T22: 1.1328 REMARK 3 T33: 0.9290 T12: 0.1209 REMARK 3 T13: 0.3378 T23: 0.4119 REMARK 3 L TENSOR REMARK 3 L11: 0.1174 L22: 0.1359 REMARK 3 L33: 0.0518 L12: -0.0269 REMARK 3 L13: 0.0824 L23: 0.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.4118 S12: 0.3124 S13: 0.8974 REMARK 3 S21: -0.1131 S22: 0.3849 S23: -0.1218 REMARK 3 S31: 0.4476 S32: -0.0986 S33: 0.0026 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 319:325) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3583 -11.5699 10.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.7901 T22: 0.8518 REMARK 3 T33: 1.1715 T12: -0.1718 REMARK 3 T13: -0.0665 T23: 0.0943 REMARK 3 L TENSOR REMARK 3 L11: 0.0124 L22: 0.0431 REMARK 3 L33: 0.0154 L12: -0.0272 REMARK 3 L13: -0.0112 L23: 0.0225 REMARK 3 S TENSOR REMARK 3 S11: 0.2728 S12: -0.2607 S13: 0.4189 REMARK 3 S21: -0.3341 S22: -0.3443 S23: 0.0568 REMARK 3 S31: 0.3973 S32: 0.3890 S33: 0.0009 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 326:351) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6199 -38.8587 10.4455 REMARK 3 T TENSOR REMARK 3 T11: 1.0471 T22: 0.6479 REMARK 3 T33: 0.4495 T12: 0.1199 REMARK 3 T13: -0.1026 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 2.6024 L22: 0.7842 REMARK 3 L33: 0.0628 L12: -0.6163 REMARK 3 L13: 0.3352 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.6655 S12: 0.1910 S13: -0.7317 REMARK 3 S21: 0.8695 S22: -0.5742 S23: 0.1212 REMARK 3 S31: -0.7625 S32: -0.5565 S33: -0.0980 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 352:382) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7987 -35.9749 -14.9586 REMARK 3 T TENSOR REMARK 3 T11: 0.9126 T22: 0.9394 REMARK 3 T33: 0.9007 T12: -0.2056 REMARK 3 T13: 0.0796 T23: 0.1719 REMARK 3 L TENSOR REMARK 3 L11: 0.2319 L22: 0.2726 REMARK 3 L33: 0.0674 L12: -0.3099 REMARK 3 L13: -0.0365 L23: 0.1130 REMARK 3 S TENSOR REMARK 3 S11: 0.1377 S12: 0.2202 S13: 0.2917 REMARK 3 S21: -0.7894 S22: 0.7820 S23: 0.4125 REMARK 3 S31: -0.3425 S32: -0.0390 S33: 0.0028 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 383:428) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9409 -26.1374 -0.8492 REMARK 3 T TENSOR REMARK 3 T11: 1.0658 T22: 0.5827 REMARK 3 T33: 0.4540 T12: 0.0749 REMARK 3 T13: -0.0999 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 3.4397 L22: 0.6679 REMARK 3 L33: 0.1698 L12: -0.2130 REMARK 3 L13: -0.0753 L23: 0.1889 REMARK 3 S TENSOR REMARK 3 S11: 1.0103 S12: 1.0811 S13: -0.1690 REMARK 3 S21: 0.8678 S22: -0.4619 S23: 0.2520 REMARK 3 S31: -0.3414 S32: -0.1787 S33: 0.1738 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 429:461) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3295 -14.5956 -5.5963 REMARK 3 T TENSOR REMARK 3 T11: 1.0531 T22: 0.8945 REMARK 3 T33: 0.6864 T12: -0.3039 REMARK 3 T13: -0.3002 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.1468 L22: 0.6149 REMARK 3 L33: 2.3204 L12: -0.8866 REMARK 3 L13: -0.7033 L23: 1.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.2176 S12: 0.5956 S13: 0.9422 REMARK 3 S21: 0.1201 S22: -0.0838 S23: 0.4612 REMARK 3 S31: -1.3677 S32: 0.4665 S33: 0.5598 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 462:490) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2942 -23.6886 -3.0415 REMARK 3 T TENSOR REMARK 3 T11: 0.8389 T22: 0.7525 REMARK 3 T33: 0.7380 T12: -0.2799 REMARK 3 T13: -0.3990 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.3041 L22: 0.1486 REMARK 3 L33: 3.1507 L12: 0.1051 REMARK 3 L13: -0.8775 L23: -0.4826 REMARK 3 S TENSOR REMARK 3 S11: 0.7511 S12: 0.1639 S13: -0.6116 REMARK 3 S21: 0.6705 S22: -0.0641 S23: 0.4450 REMARK 3 S31: -2.1113 S32: 0.0498 S33: 1.2521 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 491:495) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5081 -28.9211 -7.8166 REMARK 3 T TENSOR REMARK 3 T11: 1.0537 T22: 0.6925 REMARK 3 T33: 0.9823 T12: -0.3060 REMARK 3 T13: -0.4831 T23: 0.1760 REMARK 3 L TENSOR REMARK 3 L11: 0.2412 L22: 0.1600 REMARK 3 L33: 0.1838 L12: -0.0043 REMARK 3 L13: -0.2090 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.2646 S12: 0.0168 S13: -0.1485 REMARK 3 S21: -0.0459 S22: -0.3093 S23: 0.0160 REMARK 3 S31: -0.2847 S32: 0.0382 S33: -0.2999 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14923 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 0.91 M POTASSIUM PHOSPHATE DIBASIC, PH 6.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.98300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.99150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.97450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 57 REMARK 465 ARG A 58 REMARK 465 PRO A 59 REMARK 465 HIS A 60 REMARK 465 GLY A 61 REMARK 465 PRO A 62 REMARK 465 PRO A 63 REMARK 465 PRO A 64 REMARK 465 ASP A 65 REMARK 465 LEU A 66 REMARK 465 ALA A 81 REMARK 465 SER A 82 REMARK 465 ARG A 83 REMARK 465 PRO A 450 REMARK 465 GLU A 451 REMARK 465 LEU A 452 REMARK 465 PRO A 453 REMARK 465 SER A 454 REMARK 465 LEU A 455 REMARK 465 PRO A 456 REMARK 465 PRO A 457 REMARK 465 ASN A 458 REMARK 465 GLY A 459 REMARK 465 ASP A 496 REMARK 465 GLN A 497 REMARK 465 ALA A 498 REMARK 465 ARG A 499 REMARK 465 GLU A 500 REMARK 465 PRO A 501 REMARK 465 GLN A 502 REMARK 465 LEU A 503 REMARK 465 GLN A 504 REMARK 465 GLU A 505 REMARK 465 SER A 506 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PRO A -2 CD REMARK 480 GLU A -1 CD REMARK 480 LEU A 0 CD1 REMARK 480 LEU A 6 CD2 REMARK 480 LYS A 12 CD REMARK 480 GLU A 16 CG CD REMARK 480 ASN A 23 CG REMARK 480 LEU A 25 CB REMARK 480 GLU A 26 CD OE1 REMARK 480 GLU A 27 CG OE2 REMARK 480 GLU A 32 CD REMARK 480 ALA A 35 CB REMARK 480 GLN A 38 NE2 REMARK 480 GLU A 44 OE2 REMARK 480 LEU A 45 CD2 REMARK 480 ARG A 71 NE REMARK 480 ARG A 80 CG CZ REMARK 480 ASP A 85 OD1 REMARK 480 ARG A 90 CB CD NH2 REMARK 480 ARG A 91 NE CZ REMARK 480 GLU A 94 CD REMARK 480 ARG A 98 NH2 REMARK 480 LEU A 102 CD2 REMARK 480 GLN A 114 CD REMARK 480 ARG A 117 CB CD CZ REMARK 480 ARG A 134 CG NE CZ REMARK 480 GLN A 150 OE1 NE2 REMARK 480 LEU A 151 CD2 REMARK 480 ARG A 155 CD REMARK 480 ARG A 159 CG CZ REMARK 480 GLU A 170 CG REMARK 480 GLU A 178 CD REMARK 480 ASN A 184 CB CG REMARK 480 LYS A 215 CG CE REMARK 480 LEU A 228 CD2 REMARK 480 TYR A 229 CD2 REMARK 480 ARG A 243 NH2 REMARK 480 LEU A 272 CG REMARK 480 GLN A 273 CG REMARK 480 VAL A 297 CB REMARK 480 ASP A 298 OD1 REMARK 480 VAL A 300 CB REMARK 480 GLU A 305 CB CD OE1 OE2 REMARK 480 ILE A 309 CG1 CD1 REMARK 480 GLN A 315 CB NE2 REMARK 480 ASP A 320 CG REMARK 480 LYS A 341 CG REMARK 480 ARG A 345 CZ REMARK 480 LYS A 352 CD CE REMARK 480 LYS A 359 CB REMARK 480 GLU A 365 CG OE2 REMARK 480 GLU A 366 OE1 REMARK 480 VAL A 370 CG1 REMARK 480 ARG A 389 NE CZ REMARK 480 LYS A 392 CG REMARK 480 PHE A 394 CD2 REMARK 480 GLU A 412 CG CD REMARK 480 ARG A 440 CG CZ REMARK 480 LEU A 442 CD1 REMARK 480 TRP A 448 CE2 REMARK 480 GLU A 466 CG REMARK 480 GLU A 486 CD REMARK 480 GLN A 488 CD REMARK 480 GLU A 495 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A -2 -120.16 -64.81 REMARK 500 GLU A -1 79.76 -172.84 REMARK 500 ASN A 46 -18.84 -48.73 REMARK 500 GLU A 54 7.25 -61.99 REMARK 500 PRO A 74 -159.34 -66.83 REMARK 500 PRO A 86 36.62 -65.65 REMARK 500 ARG A 117 32.31 -58.39 REMARK 500 VAL A 120 64.36 -59.15 REMARK 500 THR A 121 -63.62 -148.13 REMARK 500 HIS A 156 -17.20 -149.65 REMARK 500 PRO A 190 -9.21 -57.56 REMARK 500 ARG A 214 -168.80 -177.06 REMARK 500 ALA A 219 87.68 -62.06 REMARK 500 ASP A 223 37.41 -90.66 REMARK 500 HIS A 235 25.54 -145.74 REMARK 500 ASP A 263 104.53 -51.11 REMARK 500 CYS A 277 116.58 -176.85 REMARK 500 TYR A 306 -30.52 -34.24 REMARK 500 TYR A 325 53.44 -113.87 REMARK 500 GLU A 346 7.75 -159.10 REMARK 500 ASP A 364 -155.85 61.53 REMARK 500 LYS A 371 -61.95 -102.26 REMARK 500 PRO A 372 -94.28 -115.52 REMARK 500 LEU A 373 75.08 44.74 REMARK 500 LYS A 374 142.10 72.70 REMARK 500 ASN A 393 84.29 -166.30 REMARK 500 GLU A 404 40.31 -152.60 REMARK 500 ALA A 447 -147.43 59.52 REMARK 500 TRP A 448 -95.29 -153.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QH2 A 1 56 UNP Q16222 UAP1_HUMAN 1 56 DBREF 8QH2 A 57 506 UNP Q3KQV9 UAP1L_HUMAN 58 507 SEQADV 8QH2 GLY A -3 UNP Q16222 EXPRESSION TAG SEQADV 8QH2 PRO A -2 UNP Q16222 EXPRESSION TAG SEQADV 8QH2 GLU A -1 UNP Q16222 EXPRESSION TAG SEQADV 8QH2 LEU A 0 UNP Q16222 EXPRESSION TAG SEQRES 1 A 510 GLY PRO GLU LEU MET ASN ILE ASN ASP LEU LYS LEU THR SEQRES 2 A 510 LEU SER LYS ALA GLY GLN GLU HIS LEU LEU ARG PHE TRP SEQRES 3 A 510 ASN GLU LEU GLU GLU ALA GLN GLN VAL GLU LEU TYR ALA SEQRES 4 A 510 GLU LEU GLN ALA MET ASN PHE GLU GLU LEU ASN PHE PHE SEQRES 5 A 510 PHE GLN LYS ALA ILE GLU GLY PHE ALA ARG PRO HIS GLY SEQRES 6 A 510 PRO PRO PRO ASP LEU ALA ALA ARG LEU ARG PRO LEU PRO SEQRES 7 A 510 PRO GLU ARG VAL GLY ARG ALA SER ARG SER ASP PRO GLU SEQRES 8 A 510 THR ARG ARG ARG TRP GLU GLU GLU GLY PHE ARG GLN ILE SEQRES 9 A 510 SER LEU ASN LYS VAL ALA VAL LEU LEU LEU ALA GLY GLY SEQRES 10 A 510 GLN GLY THR ARG LEU GLY VAL THR TYR PRO LYS GLY MET SEQRES 11 A 510 TYR ARG VAL GLY LEU PRO SER ARG LYS THR LEU TYR GLN SEQRES 12 A 510 LEU GLN ALA GLU ARG ILE ARG ARG VAL GLU GLN LEU ALA SEQRES 13 A 510 GLY GLU ARG HIS GLY THR ARG CYS THR VAL PRO TRP TYR SEQRES 14 A 510 VAL MET THR SER GLU PHE THR LEU GLY PRO THR ALA GLU SEQRES 15 A 510 PHE PHE ARG GLU HIS ASN PHE PHE HIS LEU ASP PRO ALA SEQRES 16 A 510 ASN VAL VAL MET PHE GLU GLN ARG LEU LEU PRO ALA VAL SEQRES 17 A 510 THR PHE ASP GLY LYS VAL ILE LEU GLU ARG LYS ASP LYS SEQRES 18 A 510 VAL ALA MET ALA PRO ASP GLY ASN GLY GLY LEU TYR CYS SEQRES 19 A 510 ALA LEU GLU ASP HIS LYS ILE LEU GLU ASP MET GLU ARG SEQRES 20 A 510 ARG GLY VAL GLU PHE VAL HIS VAL TYR CYS VAL ASP ASN SEQRES 21 A 510 ILE LEU VAL ARG LEU ALA ASP PRO VAL PHE ILE GLY PHE SEQRES 22 A 510 CYS VAL LEU GLN GLY ALA ASP CYS GLY ALA LYS VAL VAL SEQRES 23 A 510 GLU LYS ALA TYR PRO GLU GLU PRO VAL GLY VAL VAL CYS SEQRES 24 A 510 GLN VAL ASP GLY VAL PRO GLN VAL VAL GLU TYR SER GLU SEQRES 25 A 510 ILE SER PRO GLU THR ALA GLN LEU ARG ALA SER ASP GLY SEQRES 26 A 510 SER LEU LEU TYR ASN ALA GLY ASN ILE CYS ASN HIS PHE SEQRES 27 A 510 PHE THR ARG GLY PHE LEU LYS ALA VAL THR ARG GLU PHE SEQRES 28 A 510 GLU PRO LEU LEU LYS PRO HIS VAL ALA VAL LYS LYS VAL SEQRES 29 A 510 PRO TYR VAL ASP GLU GLU GLY ASN LEU VAL LYS PRO LEU SEQRES 30 A 510 LYS PRO ASN GLY ILE LYS MET GLU LYS PHE VAL PHE ASP SEQRES 31 A 510 VAL PHE ARG PHE ALA LYS ASN PHE ALA ALA LEU GLU VAL SEQRES 32 A 510 LEU ARG GLU GLU GLU PHE SER PRO LEU LYS ASN ALA GLU SEQRES 33 A 510 PRO ALA ASP ARG ASP SER PRO ARG THR ALA ARG GLN ALA SEQRES 34 A 510 LEU LEU THR GLN HIS TYR ARG TRP ALA LEU ARG ALA GLY SEQRES 35 A 510 ALA ARG PHE LEU ASP ALA HIS GLY ALA TRP LEU PRO GLU SEQRES 36 A 510 LEU PRO SER LEU PRO PRO ASN GLY ASP PRO PRO ALA ILE SEQRES 37 A 510 CYS GLU ILE SER PRO LEU VAL SER TYR SER GLY GLU GLY SEQRES 38 A 510 LEU GLU VAL TYR LEU GLN GLY ARG GLU PHE GLN SER PRO SEQRES 39 A 510 LEU ILE LEU ASP GLU ASP GLN ALA ARG GLU PRO GLN LEU SEQRES 40 A 510 GLN GLU SER HELIX 1 AA1 ASN A 2 GLY A 14 1 13 HELIX 2 AA2 GLN A 15 ARG A 20 5 6 HELIX 3 AA3 PHE A 21 LEU A 25 5 5 HELIX 4 AA4 GLU A 26 MET A 40 1 15 HELIX 5 AA5 ASN A 41 GLU A 54 1 14 HELIX 6 AA6 THR A 88 LEU A 102 1 15 HELIX 7 AA7 PRO A 123 TYR A 127 5 5 HELIX 8 AA8 THR A 136 ARG A 155 1 20 HELIX 9 AA9 SER A 169 HIS A 183 1 15 HELIX 10 AB1 ASN A 184 LEU A 188 5 5 HELIX 11 AB2 ASP A 189 ALA A 191 5 3 HELIX 12 AB3 GLY A 224 GLY A 226 5 3 HELIX 13 AB4 GLY A 227 ASP A 234 1 8 HELIX 14 AB5 LYS A 236 ARG A 243 1 8 HELIX 15 AB6 ASP A 263 GLN A 273 1 11 HELIX 16 AB7 SER A 310 ALA A 314 5 5 HELIX 17 AB8 ARG A 337 ARG A 345 1 9 HELIX 18 AB9 PHE A 347 LEU A 351 5 5 HELIX 19 AC1 PHE A 383 ARG A 389 5 7 HELIX 20 AC2 LEU A 400 PHE A 405 1 6 HELIX 21 AC3 SER A 418 ARG A 436 1 19 HELIX 22 AC4 LEU A 478 GLN A 483 1 6 SHEET 1 AA1 3 LEU A 70 ARG A 71 0 SHEET 2 AA1 3 VAL A 293 VAL A 297 -1 O GLN A 296 N ARG A 71 SHEET 3 AA1 3 VAL A 300 VAL A 304 -1 O VAL A 304 N VAL A 293 SHEET 1 AA2 7 VAL A 193 GLU A 197 0 SHEET 2 AA2 7 TRP A 164 THR A 168 1 N VAL A 166 O VAL A 194 SHEET 3 AA2 7 VAL A 105 LEU A 110 1 N LEU A 109 O MET A 167 SHEET 4 AA2 7 PHE A 248 CYS A 253 1 O HIS A 250 N ALA A 106 SHEET 5 AA2 7 ALA A 327 THR A 336 -1 O PHE A 335 N VAL A 249 SHEET 6 AA2 7 CYS A 277 GLU A 283 -1 N GLY A 278 O PHE A 334 SHEET 7 AA2 7 PHE A 394 GLU A 398 1 O LEU A 397 N ALA A 279 SHEET 1 AA3 2 LEU A 200 PRO A 202 0 SHEET 2 AA3 2 MET A 220 PRO A 222 -1 O ALA A 221 N LEU A 201 SHEET 1 AA4 3 VAL A 204 THR A 205 0 SHEET 2 AA4 3 GLY A 377 GLU A 381 -1 O ILE A 378 N VAL A 204 SHEET 3 AA4 3 HIS A 354 LYS A 358 -1 N HIS A 354 O GLU A 381 SHEET 1 AA5 2 LEU A 212 ARG A 214 0 SHEET 2 AA5 2 LYS A 217 VAL A 218 -1 O LYS A 217 N GLU A 213 SHEET 1 AA6 2 ARG A 440 LEU A 442 0 SHEET 2 AA6 2 GLU A 486 GLN A 488 1 O PHE A 487 N LEU A 442 SHEET 1 AA7 2 CYS A 465 ILE A 467 0 SHEET 2 AA7 2 LEU A 491 LEU A 493 1 O LEU A 493 N GLU A 466 SSBOND 1 CYS A 253 CYS A 331 1555 1555 2.02 CISPEP 1 SER A 489 PRO A 490 0 2.89 CRYST1 113.523 113.523 43.966 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022745 0.00000 CONECT 1986 2562 CONECT 2562 1986 MASTER 650 0 0 22 21 0 0 6 3810 1 2 40 END